Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001881

Physical Location & Seq

Genomic Coordinates Reverse (-)

38120852 .. 38121543

Gene Structure 692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG339700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGATCTGGGAAGATGTTATTTTGTGTATGCCTTTGCTGCTTTAGACCCTATATCATTAAACTATGGACCTTCTGGTCTGCTATCAACCTTTGTGCATGATGTGCCGAAGCAAATCCATGAGATCAAGGATTTCCTCCTGACTGCAAGAAGGAAGGATGCCCGTTCTGTGAAAATCAAGAAGACGAAGGACGCAATCAAGTTCAAGGTTCGATGCAACCTTTACTTTATTACTATTAAGGAAGCTTTTGCAACTCGTATATCTGGATCTGCTGACCTTTACAAAGTAAGCATGGCTGTTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L38e

Protein Analysis

101

Amino Acids

11.42

Weight (kDa)

9.7

Isoelectric Point (pI)

23.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L38e	PF01781	36 - 79	6.8e-18	Ribosomal L38e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43460 AT3G59540
fragaria_vesca	FvH4_2g11140 FvH4_2g12030 FvH4_3g31637 FvH4_6g00180 FvH4_6g00180
malus_domestica	MD03G1210200.v1.1 MD04G1045900.v1.1 MD04G1247500.v1.1 MD05G1254000.v1.1 MD05G1339000.v1.1 MD11G1200200.v1.1 MD12G1262900.v1.1 MD13G1258200.v1.1 MD15G1353900.v1.1
prunus_persica	Prupe.1G193400_v2.0.a1 Prupe.1G198900_v2.0.a1 Prupe.6G363900_v2.0.a1 Prupe.7G035900_v2.0.a1
pyrus_communis	pycom04g21820 pycom12g24090
rosa_chinensis	RchiOBHm_Chr3g0447551 RchiOBHm_Chr6g0269441
rosa_laevigata	RLG00000025704
rosa_multiflora	Rmu_co8253789.1_g000001 Rmu_sc0000743.1_g000005 Rmu_sc0003550.1_g000008 Rmu_sc0027627.1_g000001 Rmu_sc0037294.1_g000003
rosa_roxburghii	Rroxscaffold_7G00198720
rosa_rugosa	Rorug02G0602700 Rorug02G0602800 Rorug05G0286200 Rorug05G0286200 Rorug06G0047800
rosa_samantha	Rh2CG566400 Rh3CG339700 Rh5CG368600 Rh5DG420000 Rh6CG167700 Rh6DG159700
rosa_wichuraiana	Rw2G024710 Rw3G000200 Rw5G036920 Rw6G014480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	75
AclWI	GGATC	2 cut(s)	12, 274
AgsI	TTSAA	1 cut(s)	205
AluBI	AGCT	1 cut(s)	245
AluI	AGCT	1 cut(s)	245
AlwI	GGATC	2 cut(s)	12, 274
ApeKI	GCWGC	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	68
BbsI	GAAGAC	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	25
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
Bme18I	GGWCC	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	68
BmsI	GCATC	2 cut(s)	148, 203
BpiI	GAAGAC	1 cut(s)	188
BseGI	GGATG	1 cut(s)	163
BseXI	GCAGC	1 cut(s)	25
Bsp143I	GATC	3 cut(s)	4, 123, 266
BspPI	GGATC	2 cut(s)	12, 274
BssMI	GATC	3 cut(s)	4, 123, 266
BstAPI	GCANNNNNTGC	1 cut(s)	103
BstF5I	GGATG	1 cut(s)	163
BstKTI	GATC	3 cut(s)	7, 126, 269
BstMBI	GATC	3 cut(s)	4, 123, 266
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 103
BstV1I	GCAGC	1 cut(s)	25
BstV2I	GAAGAC	1 cut(s)	188
BstX2I	RGATCY	2 cut(s)	4, 266
BstYI	RGATCY	2 cut(s)	4, 266
BtsCI	GGATG	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	68
CseI	GACGC	1 cut(s)	200
CviAII	CATG	3 cut(s)	98, 119, 292
CviJI	RGCY	2 cut(s)	245, 296
CviKI_1	RGCY	2 cut(s)	245, 296
DpnI	GATC	3 cut(s)	6, 125, 268
DpnII	GATC	3 cut(s)	4, 123, 266
DrdI	GACNNNNNNGTC	1 cut(s)	75
DseDI	GACNNNNNNGTC	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	68
FaeI	CATG	3 cut(s)	101, 122, 295
FaiI	YATR	8 cut(s)	30, 53, 66, 99, 120, 260, 293, 304
FatI	CATG	3 cut(s)	97, 118, 291
Fnu4HI	GCNGC	1 cut(s)	39
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	1 cut(s)	39
GluI	GCNGC	1 cut(s)	39
HgaI	GACGC	1 cut(s)	200
Hin1II	CATG	3 cut(s)	101, 122, 295
HindIII	AAGCTT	1 cut(s)	243
Hpy188III	TCNNGA	3 cut(s)	139, 178, 264
HpyAV	CCTTC	4 cut(s)	81, 144, 148, 181
HpyCH4V	TGCA	4 cut(s)	97, 146, 216, 251
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 103
Hsp92II	CATG	3 cut(s)	101, 122, 295
Kzo9I	GATC	3 cut(s)	4, 123, 266
LpnPI	CCDG	3 cut(s)	60, 152, 249
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	2 cut(s)	148, 203
MalI	GATC	3 cut(s)	6, 125, 268
MboI	GATC	3 cut(s)	4, 123, 266
MboII	GAAGA	2 cut(s)	24, 193
MflI	RGATCY	2 cut(s)	4, 266
MnlI	CCTC	1 cut(s)	146
MseI	TTAA	2 cut(s)	59, 237
MwoI	GCNNNNNNNGC	2 cut(s)	38, 103
NdeII	GATC	3 cut(s)	4, 123, 266
NlaIII	CATG	3 cut(s)	101, 122, 295
PkrI	GCNGC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	68
PsuI	RGATCY	2 cut(s)	4, 266
SaqAI	TTAA	2 cut(s)	59, 237
SatI	GCNGC	1 cut(s)	39
Sau3AI	GATC	3 cut(s)	4, 123, 266
Sau96I	GGNCC	1 cut(s)	68
SetI	ASST	6 cut(s)	73, 92, 210, 222, 247, 279
SfaNI	GCATC	2 cut(s)	148, 203
SinI	GGWCC	1 cut(s)	68
TaqI	TCGA	1 cut(s)	211
Tru1I	TTAA	2 cut(s)	59, 237
Tru9I	TTAA	2 cut(s)	59, 237
TseI	GCWGC	1 cut(s)	38
TspDTI	ATGAA	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.