FvH4_6g00180

Belongs to the eukaryotic ribosomal protein eL38 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001881
Physical Location & Seq
Reverse (-)
145926 .. 147425
1500 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g00180.t1

Sequence Viewer

Length: 231 bp
ATGTACTTTGTTTCCTACTGGCAGCCGAAGCAAATTCATGAGATCAAGGATTTCCTTCTAACCGCAAGAAGGAAGGACGCACGTTCTGTCAAAATCAAGAGAACAAAGGATGCTGTGAAGTTCAAGGTTCGGTGCTCAAAGTACCTCTACACCCTTTGCGTGTTTGACTCTGAGAAGGCAGACAAGTTGAAGCAATCTCTTCCTCCAGGCTTGACCGTACAAGACCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L38e

Protein Analysis

77

Amino Acids

9.01

Weight (kDa)

9.81

Isoelectric Point (pI)

47.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L38e PF01781 9 - 75 3.8e-35 Ribosomal L38e protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 63
AcsI RAATTY 1 cut(s) 33
AfaI GTAC 3 cut(s) 5, 143, 219
AfiI CCNNNNNNNGG 1 cut(s) 69
AgsI TTSAA 2 cut(s) 124, 190
AjnI CCWGG 1 cut(s) 205
Alw21I GWGCWC 1 cut(s) 137
ApeKI GCWGC 1 cut(s) 22
ApoI RAATTY 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 137
BbvI GCAGC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 207
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 100
BpmI CTGGAG 1 cut(s) 189
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse1I ACTGG 1 cut(s) 23
BseBI CCWGG 1 cut(s) 207
BseGI GGATG 1 cut(s) 115
BseLI CCNNNNNNNGG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 137
BslI CCNNNNNNNGG 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 137
Bsp143I GATC 1 cut(s) 42
BspACI CCGC 1 cut(s) 63
BspCNI CTCAG 1 cut(s) 163
BspHI TCATGA 1 cut(s) 37
BsrI ACTGG 1 cut(s) 23
BssMI GATC 1 cut(s) 42
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 217
Bst6I CTCTTC 1 cut(s) 204
BstDEI CTNAG 1 cut(s) 171
BstF5I GGATG 1 cut(s) 115
BstKTI GATC 1 cut(s) 45
BstMBI GATC 1 cut(s) 42
BstMWI GCNNNNNNNGC 1 cut(s) 28
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstV1I GCAGC 1 cut(s) 34
BtsCI GGATG 1 cut(s) 115
CciI TCATGA 1 cut(s) 37
CseI GACGC 1 cut(s) 86
Csp6I GTAC 3 cut(s) 4, 142, 218
CviAII CATG 1 cut(s) 38
CviJI RGCY 2 cut(s) 25, 210
CviKI_1 RGCY 2 cut(s) 25, 210
CviQI GTAC 3 cut(s) 4, 142, 218
DdeI CTNAG 1 cut(s) 171
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
EcoRII CCWGG 1 cut(s) 205
FaeI CATG 1 cut(s) 41
FaiI YATR 1 cut(s) 39
FatI CATG 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 23
FokI GGATG 1 cut(s) 122
Fsp4HI GCNGC 1 cut(s) 23
GluI GCNGC 1 cut(s) 23
GsuI CTGGAG 1 cut(s) 189
HgaI GACGC 1 cut(s) 86
Hin1II CATG 1 cut(s) 41
HinfI GANTC 1 cut(s) 167
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 2 cut(s) 38, 97
HpyAV CCTTC 4 cut(s) 63, 65, 67, 169
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4IV ACGT 1 cut(s) 82
HpyF10VI GCNNNNNNNGC 1 cut(s) 28
HpyF3I CTNAG 1 cut(s) 171
HpySE526I ACGT 1 cut(s) 82
Hsp92II CATG 1 cut(s) 41
Kzo9I GATC 1 cut(s) 42
LpnPI CCDG 3 cut(s) 4, 192, 219
Lsp1109I GCAGC 1 cut(s) 34
LweI GCATC 1 cut(s) 100
MaeII ACGT 1 cut(s) 82
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MboII GAAGA 1 cut(s) 191
MhlI GDGCHC 1 cut(s) 137
MluCI AATT 1 cut(s) 33
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 2 cut(s) 155, 213
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 28
NdeII GATC 1 cut(s) 42
NlaIII CATG 1 cut(s) 41
PagI TCATGA 1 cut(s) 37
PkrI GCNGC 1 cut(s) 24
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
RsaI GTAC 3 cut(s) 5, 143, 219
RsaNI GTAC 3 cut(s) 4, 142, 218
SatI GCNGC 1 cut(s) 23
Sau3AI GATC 1 cut(s) 42
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 1 cut(s) 137
SetI ASST 4 cut(s) 85, 129, 147, 228
SfaNI GCATC 1 cut(s) 100
Sse9I AATT 1 cut(s) 33
SsiI CCGC 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 205
TaaI ACNGT 1 cut(s) 217
TaiI ACGT 1 cut(s) 85
TasI AATT 1 cut(s) 33
TatI WGTACW 1 cut(s) 3
TseI GCWGC 1 cut(s) 22
TspDTI ATGAA 1 cut(s) 26
XapI RAATTY 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.