FvH4_2g12030

Belongs to the eukaryotic ribosomal protein eL38 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001881
Physical Location & Seq
Reverse (-)
10512737 .. 10513048
312 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g12030.t1

Sequence Viewer

Length: 312 bp
ATGAGGCAAAGGCGATCGGCGTTTGTTGCTCGATATCAGATGAGCGATTCCTTCGCTCACAGAACGCTCGCAGCCTCCAGAGATCAAACCCATCCTCCCAACATGCTGAAGCAAATCCATGAGATCAAGGATTTCCTCCTGACTGCAAGAAGGAAGGATGAACGTTCTGTGAAAATCAAGAAGACGAAAGATGATGTTAAGTTCAAGGTTCGATGCTCCAAGTACCTTTACACACTTTGTGTGTTTGATACTGATAAGGCTGATAAGTTGAAGCAATCCCTTCCTCTAGGTTTGACTGTTCAGGATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L38e

Protein Analysis

104

Amino Acids

12.12

Weight (kDa)

10.01

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L38e PF01781 37 - 102 6.4e-31 Ribosomal L38e protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 163
AcuI CTGAAG 1 cut(s) 128
AdeI CACNNNGTG 1 cut(s) 239
AfaI GTAC 1 cut(s) 224
AgsI TTSAA 2 cut(s) 205, 271
ApeKI GCWGC 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 83
BccI CCATC 1 cut(s) 99
BfaI CTAG 1 cut(s) 287
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
BmsI GCATC 1 cut(s) 203
BpiI GAAGAC 1 cut(s) 188
BpmI CTGGAG 1 cut(s) 61
BsaXI ACNNNNNCTCC 2 cut(s) 79, 109
BseGI GGATG 2 cut(s) 91, 163
BseXI GCAGC 1 cut(s) 83
Bsh1285I CGRYCG 1 cut(s) 17
BsiEI CGRYCG 1 cut(s) 17
Bsp143I GATC 4 cut(s) 14, 82, 123, 304
BssMI GATC 4 cut(s) 14, 82, 123, 304
Bst4CI ACNGT 1 cut(s) 298
BstC8I GCNNGC 1 cut(s) 69
BstF5I GGATG 2 cut(s) 91, 163
BstKTI GATC 4 cut(s) 17, 85, 126, 307
BstMBI GATC 4 cut(s) 14, 82, 123, 304
BstMCI CGRYCG 1 cut(s) 17
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNSI RCATGY 1 cut(s) 106
BstV1I GCAGC 1 cut(s) 83
BstV2I GAAGAC 1 cut(s) 188
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
BtsCI GGATG 2 cut(s) 91, 163
Cac8I GCNNGC 1 cut(s) 69
Csp6I GTAC 1 cut(s) 223
CviAII CATG 2 cut(s) 103, 119
CviJI RGCY 2 cut(s) 74, 260
CviKI_1 RGCY 2 cut(s) 74, 260
CviQI GTAC 1 cut(s) 223
DpnI GATC 4 cut(s) 16, 84, 125, 306
DpnII GATC 4 cut(s) 14, 82, 123, 304
DraIII CACNNNGTG 1 cut(s) 239
Eco32I GATATC 1 cut(s) 35
Eco57I CTGAAG 1 cut(s) 128
EcoRV GATATC 1 cut(s) 35
FaeI CATG 2 cut(s) 106, 122
FaiI YATR 2 cut(s) 104, 120
FatI CATG 2 cut(s) 102, 118
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 2 cut(s) 78, 170
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 1 cut(s) 287
GluI GCNGC 1 cut(s) 72
GsuI CTGGAG 1 cut(s) 61
Hin1II CATG 2 cut(s) 106, 122
HinfI GANTC 1 cut(s) 47
Hpy188I TCNGA 1 cut(s) 39
Hpy188III TCNNGA 4 cut(s) 78, 139, 178, 302
HpyAV CCTTC 4 cut(s) 61, 144, 148, 290
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 1 cut(s) 146
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpySE526I ACGT 1 cut(s) 163
Hsp92II CATG 2 cut(s) 106, 122
Kzo9I GATC 4 cut(s) 14, 82, 123, 304
LmnI GCTCC 1 cut(s) 221
LpnPI CCDG 3 cut(s) 91, 152, 287
Lsp1109I GCAGC 1 cut(s) 83
LweI GCATC 1 cut(s) 203
MaeI CTAG 1 cut(s) 287
MaeII ACGT 1 cut(s) 163
MalI GATC 4 cut(s) 16, 84, 125, 306
MboI GATC 4 cut(s) 14, 82, 123, 304
MboII GAAGA 1 cut(s) 193
MflI RGATCY 1 cut(s) 304
MnlI CCTC 4 cut(s) 85, 105, 146, 294
MseI TTAA 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 26
NdeII GATC 4 cut(s) 14, 82, 123, 304
NlaIII CATG 2 cut(s) 106, 122
NspI RCATGY 1 cut(s) 106
PfeI GAWTC 1 cut(s) 47
PkrI GCNGC 1 cut(s) 73
Ple19I CGATCG 1 cut(s) 17
Psp1406I AACGTT 1 cut(s) 163
PsuI RGATCY 1 cut(s) 304
PvuI CGATCG 1 cut(s) 17
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 4 cut(s) 14, 82, 123, 304
SetI ASST 4 cut(s) 166, 210, 228, 292
SfaNI GCATC 1 cut(s) 203
SspMI CTAG 1 cut(s) 287
TaaI ACNGT 1 cut(s) 298
TaiI ACGT 1 cut(s) 166
TaqI TCGA 2 cut(s) 31, 211
TfiI GAWTC 1 cut(s) 47
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TseI GCWGC 1 cut(s) 71
TspDTI ATGAA 1 cut(s) 174
XceI RCATGY 1 cut(s) 106
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.