FvH4_3g31637

Belongs to the eukaryotic ribosomal protein eL38 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001881
Physical Location & Seq
Forward (+)
26051764 .. 26052227
464 bp
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UTR
Exon/CDS
Intron
FvH4_3g31637.t1

Sequence Viewer

Length: 387 bp
ATGAAAATACCCCTACCGGAGAGTCGCCGAGGCGCAAAAGGTGGAGGGAGGGTAGTTTCGGAAAGTAAGGGGAATATGAGGCAAAGGCGATCGGTGTCTGTTGCTCGATATCAGATGAGCGATTCCTTCGCTCACAGAACGCTCGCAGCCTCCAGAGATCAAACCCATCCTCCCAACATGTCGAAGCAAATCCATGAGATCAAGGATTTCCTCCTGACTGCAAGAAGGAAGGATGAATGTTCTGTGAAAATCAAGAAGACGAAAGACGCAGTTAGGTTCAAGGTTCGATGCTCCAAGTACCTTTACACACTTTGTGTGTTTGATACTGATAAGGCTGATAAGTTGAAGCAATCCCTTCCTCTAGGTTTGACTGTTCAGGATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L38e

Protein Analysis

129

Amino Acids

14.58

Weight (kDa)

10.19

Isoelectric Point (pI)

50.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L38e PF01781 62 - 127 2.8e-29 Ribosomal L38e protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 314
AfaI GTAC 1 cut(s) 299
AflIII ACRYGT 1 cut(s) 177
AgsI TTSAA 2 cut(s) 280, 346
ApeKI GCWGC 1 cut(s) 146
AspLEI GCGC 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 263
BbvI GCAGC 1 cut(s) 158
BccI CCATC 1 cut(s) 174
BfaI CTAG 1 cut(s) 362
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
BmsI GCATC 1 cut(s) 278
BpiI GAAGAC 1 cut(s) 263
BpmI CTGGAG 1 cut(s) 136
BsaJI CCNNGG 1 cut(s) 28
BsaWI WCCGGW 1 cut(s) 16
BsaXI ACNNNNNCTCC 4 cut(s) 36, 66, 154, 184
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 2 cut(s) 166, 238
BseXI GCAGC 1 cut(s) 158
Bsh1285I CGRYCG 1 cut(s) 92
BsiEI CGRYCG 1 cut(s) 92
BsiSI CCGG 1 cut(s) 17
Bsp143I GATC 4 cut(s) 89, 157, 198, 379
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 4 cut(s) 89, 157, 198, 379
Bst4CI ACNGT 1 cut(s) 373
BstC8I GCNNGC 1 cut(s) 144
BstF5I GGATG 2 cut(s) 166, 238
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 4 cut(s) 92, 160, 201, 382
BstMBI GATC 4 cut(s) 89, 157, 198, 379
BstMCI CGRYCG 1 cut(s) 92
BstNSI RCATGY 1 cut(s) 181
BstV1I GCAGC 1 cut(s) 158
BstV2I GAAGAC 1 cut(s) 263
BstX2I RGATCY 1 cut(s) 379
BstYI RGATCY 1 cut(s) 379
BtsCI GGATG 2 cut(s) 166, 238
Cac8I GCNNGC 1 cut(s) 144
CfoI GCGC 1 cut(s) 35
CseI GACGC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 298
CviAII CATG 2 cut(s) 178, 194
CviJI RGCY 2 cut(s) 149, 335
CviKI_1 RGCY 2 cut(s) 149, 335
CviQI GTAC 1 cut(s) 298
DpnI GATC 4 cut(s) 91, 159, 200, 381
DpnII GATC 4 cut(s) 89, 157, 198, 379
DraIII CACNNNGTG 1 cut(s) 314
Eco32I GATATC 1 cut(s) 110
EcoRV GATATC 1 cut(s) 110
FaeI CATG 2 cut(s) 181, 197
FaiI YATR 3 cut(s) 77, 179, 195
FatI CATG 2 cut(s) 177, 193
Fnu4HI GCNGC 1 cut(s) 147
FokI GGATG 2 cut(s) 153, 245
Fsp4HI GCNGC 1 cut(s) 147
FspBI CTAG 1 cut(s) 362
GlaI GCGC 1 cut(s) 34
GluI GCNGC 1 cut(s) 147
GsuI CTGGAG 1 cut(s) 136
HapII CCGG 1 cut(s) 17
HgaI GACGC 1 cut(s) 275
HhaI GCGC 1 cut(s) 35
Hin1II CATG 2 cut(s) 181, 197
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HinfI GANTC 2 cut(s) 22, 122
HpaII CCGG 1 cut(s) 17
Hpy188I TCNGA 2 cut(s) 61, 114
Hpy188III TCNNGA 4 cut(s) 153, 214, 253, 377
HpyAV CCTTC 4 cut(s) 136, 219, 223, 365
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4V TGCA 1 cut(s) 221
Hsp92II CATG 2 cut(s) 181, 197
HspAI GCGC 1 cut(s) 33
Kzo9I GATC 4 cut(s) 89, 157, 198, 379
LmnI GCTCC 1 cut(s) 296
LpnPI CCDG 4 cut(s) 30, 166, 227, 362
Lsp1109I GCAGC 1 cut(s) 158
LweI GCATC 1 cut(s) 278
MaeI CTAG 1 cut(s) 362
MalI GATC 4 cut(s) 91, 159, 200, 381
MboI GATC 4 cut(s) 89, 157, 198, 379
MboII GAAGA 1 cut(s) 268
MflI RGATCY 1 cut(s) 379
MlyI GAGTC 1 cut(s) 31
MnlI CCTC 8 cut(s) 23, 38, 42, 72, 160, 180, 221, 369
MspI CCGG 1 cut(s) 17
NdeII GATC 4 cut(s) 89, 157, 198, 379
NlaIII CATG 2 cut(s) 181, 197
NmeAIII GCCGAG 1 cut(s) 53
NspI RCATGY 1 cut(s) 181
PciI ACATGT 1 cut(s) 177
PfeI GAWTC 1 cut(s) 122
PkrI GCNGC 1 cut(s) 148
Ple19I CGATCG 1 cut(s) 92
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
PscI ACATGT 1 cut(s) 177
PsuI RGATCY 1 cut(s) 379
PvuI CGATCG 1 cut(s) 92
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 4 cut(s) 89, 157, 198, 379
SchI GAGTC 1 cut(s) 31
SetI ASST 5 cut(s) 43, 278, 285, 303, 367
SfaNI GCATC 1 cut(s) 278
SspMI CTAG 1 cut(s) 362
TaaI ACNGT 1 cut(s) 373
TaqI TCGA 3 cut(s) 106, 182, 286
TfiI GAWTC 1 cut(s) 122
TseI GCWGC 1 cut(s) 146
TspDTI ATGAA 2 cut(s) 17, 249
XceI RCATGY 1 cut(s) 181
XspI CTAG 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.