Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001881

Physical Location & Seq

Genomic Coordinates Forward (+)

38476204 .. 38478058

Gene Structure 1855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1254000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGACTTTTAACTCCTTTTCCCCCTTGGTCTTATCCCTAAATTGTAATGTTTATGGTGTGAGAAGGCTTGATGCAGCTGCAGTAGACATGTGCCATGTAGCTCTTGGGATTGTAGAAGCCTACTGGGAATATCGACTAAAGCCAAGGGATATGGCAGCTGGTGTTTTGATAGTTGAAGAGGCTGGAGGAAAGGTTACATGCATGGATGGCGGAAAATTTTCTGTATTTGATAGATCTGTCTTGGTATCCAATGATGTGCTGCACGGCAAGCTTTTAGAGAGGATTGCACCTGCAACAGAGAAATTAAGAGCAAAGGAACAAGCCCGAAGGTTACACAACAGACATTTGATGCACCTGACAGTCAGGGGCGGATCCACAGTGGGGTCAATGGGGTCACACGACCCCTTGGAAGCCATGGAAATAACCTGGGAGCTGCTAGTGCGACCTCTTGGAGCTGCACATCACGTGGTCTACGAAATGTCTGAAAGAAGAAGAAAGAGTTCGCTTGCAAGGTTGAAGAAGAAGGAGGATGCTGGTGTGTTGATAGCCTCCTCGGACATTGAGAGAGAACTCGCAGCCTCCGGTCTCGACCGAGCAACAAGCAAAATGCCGAAGCAGATCCATGAGATCAAGGATTTCCTTCTAACTGCAAGAAGGAAGGATGCTCGCAATGTCAAAATCAAGAGGACCAAGGATGCTGTCAAGTTCAAGGTTCGGTGCTCCAAGTACCTTTACACACTTTGTGTGTTTGGTTCTGAGAAGGCCGACAAGTTGAAGCAATCTCTTCCTCCAGGTTTGAACGTTCAGGACCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008934 GO:0009056 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0023052 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052745 GO:0052834 GO:0065007 GO:0071545 GO:0071704 GO:1901575 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

ko00521 ko00562 ko01100 ko04070 map00521 map00562 map01100 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

272

Amino Acids

30.31

Weight (kDa)

9.64

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inositol_P	PF00459	10 - 101	4.7e-22	Inositol monophosphatase family
Ribosomal_L38e	PF01781	204 - 270	1.4e-32	Ribosomal L38e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43460 AT3G59540
fragaria_vesca	FvH4_2g11140 FvH4_2g12030 FvH4_3g31637 FvH4_6g00180 FvH4_6g00180
malus_domestica	MD03G1210200.v1.1 MD04G1045900.v1.1 MD04G1247500.v1.1 MD05G1254000.v1.1 MD05G1339000.v1.1 MD11G1200200.v1.1 MD12G1262900.v1.1 MD13G1258200.v1.1 MD15G1353900.v1.1
prunus_persica	Prupe.1G193400_v2.0.a1 Prupe.1G198900_v2.0.a1 Prupe.6G363900_v2.0.a1 Prupe.7G035900_v2.0.a1
pyrus_communis	pycom04g21820 pycom12g24090
rosa_chinensis	RchiOBHm_Chr3g0447551 RchiOBHm_Chr6g0269441
rosa_laevigata	RLG00000025704
rosa_multiflora	Rmu_co8253789.1_g000001 Rmu_sc0000743.1_g000005 Rmu_sc0003550.1_g000008 Rmu_sc0027627.1_g000001 Rmu_sc0037294.1_g000003
rosa_roxburghii	Rroxscaffold_7G00198720
rosa_rugosa	Rorug02G0602700 Rorug02G0602800 Rorug05G0286200 Rorug05G0286200 Rorug06G0047800
rosa_samantha	Rh2CG566400 Rh3CG339700 Rh5CG368600 Rh5DG420000 Rh6CG167700 Rh6DG159700
rosa_wichuraiana	Rw2G024710 Rw3G000200 Rw5G036920 Rw6G014480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	298
Acc36I	ACCTGC	1 cut(s)	298
AccI	GTMKAC	2 cut(s)	84, 471
AciI	CCGC	2 cut(s)	210, 369
AclI	AACGTT	1 cut(s)	801
AclWI	GGATC	3 cut(s)	366, 379, 613
AcsI	RAATTY	1 cut(s)	215
AcvI	CACGTG	1 cut(s)	466
AdeI	CACNNNGTG	1 cut(s)	743
AfaI	GTAC	1 cut(s)	728
AfiI	CCNNNNNNNGG	1 cut(s)	381
AflIII	ACRYGT	1 cut(s)	87
AgsI	TTSAA	5 cut(s)	176, 517, 709, 775, 799
AjnI	CCWGG	2 cut(s)	425, 790
AluBI	AGCT	6 cut(s)	77, 101, 158, 271, 433, 455
AluI	AGCT	6 cut(s)	77, 101, 158, 271, 433, 455
Alw21I	GWGCWC	1 cut(s)	722
Alw26I	GTCTC	1 cut(s)	590
AlwI	GGATC	3 cut(s)	366, 379, 613
AoxI	GGCC	1 cut(s)	762
ApeKI	GCWGC	7 cut(s)	74, 77, 155, 259, 433, 455, 575
ApoI	RAATTY	1 cut(s)	215
Asp700I	GAANNNNTTC	2 cut(s)	217, 499
AspS9I	GGNCC	2 cut(s)	687, 808
AvaII	GGWCC	2 cut(s)	687, 808
BamHI	GGATCC	1 cut(s)	371
BbrPI	CACGTG	1 cut(s)	466
Bbv12I	GWGCWC	1 cut(s)	722
BbvI	GCAGC	7 cut(s)	64, 86, 167, 246, 420, 442, 587
BccI	CCATC	1 cut(s)	200
BceAI	ACGGC	1 cut(s)	280
BciT130I	CCWGG	2 cut(s)	427, 792
BciVI	GTATCC	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	590
BfaI	CTAG	1 cut(s)	437
BfmI	CTRYAG	1 cut(s)	78
BfuAI	ACCTGC	1 cut(s)	298
BfuI	GTATCC	1 cut(s)	256
BglII	AGATCT	1 cut(s)	233
BisI	GCNGC	7 cut(s)	75, 78, 156, 260, 434, 456, 576
BlsI	GCNGC	7 cut(s)	76, 79, 157, 261, 435, 457, 577
Bme1390I	CCNGG	2 cut(s)	427, 792
Bme18I	GGWCC	2 cut(s)	687, 808
BmgT120I	GGNCC	2 cut(s)	687, 808
BmiI	GGNNCC	1 cut(s)	373
BmrFI	CCNGG	2 cut(s)	427, 792
BmrI	ACTGGG	1 cut(s)	133
BmsI	GCATC	5 cut(s)	61, 339, 520, 652, 685
BmuI	ACTGGG	1 cut(s)	133
BpmI	CTGGAG	2 cut(s)	204, 774
BsaAI	YACGTR	1 cut(s)	466
BsaI	GGTCTC	1 cut(s)	590
BsaJI	CCNNGG	7 cut(s)	24, 143, 405, 414, 426, 552, 690
BsaWI	WCCGGW	1 cut(s)	581
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bsc4I	CCNNNNNNNGG	1 cut(s)	381
Bse1I	ACTGG	1 cut(s)	128
Bse3DI	GCAATG	1 cut(s)	676
BseBI	CCWGG	2 cut(s)	427, 792
BseDI	CCNNGG	7 cut(s)	24, 143, 405, 414, 426, 552, 690
BseGI	GGATG	4 cut(s)	211, 535, 667, 700
BseLI	CCNNNNNNNGG	1 cut(s)	381
BseMI	GCAATG	1 cut(s)	676
BseMII	CTCAG	1 cut(s)	747
BseNI	ACTGG	1 cut(s)	128
BseRI	GAGGAG	1 cut(s)	541
BseXI	GCAGC	7 cut(s)	64, 86, 167, 246, 420, 442, 587
BsgI	GTGCAG	2 cut(s)	245, 441
Bsh1285I	CGRYCG	1 cut(s)	592
BshFI	GGCC	1 cut(s)	764
BsiEI	CGRYCG	1 cut(s)	592
BsiHKAI	GWGCWC	1 cut(s)	722
BsiSI	CCGG	1 cut(s)	582
BslI	CCNNNNNNNGG	1 cut(s)	381
BsmAI	GTCTC	1 cut(s)	590
BsnI	GGCC	1 cut(s)	764
Bso31I	GGTCTC	1 cut(s)	590
Bsp1286I	GDGCHC	1 cut(s)	722
Bsp143I	GATC	4 cut(s)	233, 371, 618, 627
Bsp19I	CCATGG	1 cut(s)	414
BspACI	CCGC	2 cut(s)	210, 369
BspANI	GGCC	1 cut(s)	764
BspCNI	CTCAG	1 cut(s)	748
BspLI	GGNNCC	1 cut(s)	373
BspMAI	CTGCAG	1 cut(s)	82
BspMI	ACCTGC	1 cut(s)	298
BspPI	GGATC	3 cut(s)	366, 379, 613
BspTNI	GGTCTC	1 cut(s)	590
BsrDI	GCAATG	1 cut(s)	676
BsrI	ACTGG	1 cut(s)	128
BssECI	CCNNGG	7 cut(s)	24, 143, 405, 414, 426, 552, 690
BssMI	GATC	4 cut(s)	233, 371, 618, 627
BssT1I	CCWWGG	5 cut(s)	24, 143, 405, 414, 690
Bst2UI	CCWGG	2 cut(s)	427, 792
Bst4CI	ACNGT	2 cut(s)	361, 379
Bst6I	CTCTTC	2 cut(s)	171, 789
BstBAI	YACGTR	1 cut(s)	466
BstC8I	GCNNGC	3 cut(s)	269, 507, 667
BstDEI	CTNAG	1 cut(s)	756
BstDSI	CCRYGG	1 cut(s)	414
BstF5I	GGATG	4 cut(s)	211, 535, 667, 700
BstKTI	GATC	4 cut(s)	236, 374, 621, 630
BstMAI	GTCTC	1 cut(s)	590
BstMBI	GATC	4 cut(s)	233, 371, 618, 627
BstMCI	CGRYCG	1 cut(s)	592
BstMWI	GCNNNNNNNGC	3 cut(s)	207, 268, 439
BstNI	CCWGG	2 cut(s)	427, 792
BstNSI	RCATGY	2 cut(s)	91, 201
BstSCI	CCNGG	2 cut(s)	425, 790
BstSFI	CTRYAG	1 cut(s)	78
BstV1I	GCAGC	7 cut(s)	64, 86, 167, 246, 420, 442, 587
BstX2I	RGATCY	3 cut(s)	233, 371, 618
BstYI	RGATCY	3 cut(s)	233, 371, 618
BsuI	GTATCC	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	764
BtgI	CCRYGG	1 cut(s)	414
BtsCI	GGATG	4 cut(s)	211, 535, 667, 700
BtsIMutI	CAGTG	1 cut(s)	384
BveI	ACCTGC	1 cut(s)	298
Cac8I	GCNNGC	3 cut(s)	269, 507, 667
Cfr13I	GGNCC	2 cut(s)	687, 808
Csp6I	GTAC	1 cut(s)	727
CviAII	CATG	6 cut(s)	88, 95, 198, 202, 415, 623
CviQI	GTAC	1 cut(s)	727
DdeI	CTNAG	1 cut(s)	756
DpnI	GATC	4 cut(s)	235, 373, 620, 629
DpnII	GATC	4 cut(s)	233, 371, 618, 627
DraIII	CACNNNGTG	1 cut(s)	743
Eam1104I	CTCTTC	2 cut(s)	171, 789
EarI	CTCTTC	2 cut(s)	171, 789
EciI	GGCGGA	2 cut(s)	225, 384
Eco130I	CCWWGG	5 cut(s)	24, 143, 405, 414, 690
Eco31I	GGTCTC	1 cut(s)	590
Eco47I	GGWCC	2 cut(s)	687, 808
Eco72I	CACGTG	1 cut(s)	466
EcoO109I	RGGNCCY	1 cut(s)	808
EcoRII	CCWGG	2 cut(s)	425, 790
EcoT14I	CCWWGG	5 cut(s)	24, 143, 405, 414, 690
EcoT22I	ATGCAT	1 cut(s)	203
ErhI	CCWWGG	5 cut(s)	24, 143, 405, 414, 690
FaeI	CATG	6 cut(s)	91, 98, 201, 205, 418, 626
FaiI	YATR	8 cut(s)	54, 89, 96, 152, 199, 203, 416, 624
FatI	CATG	6 cut(s)	87, 94, 197, 201, 414, 622
FblI	GTMKAC	2 cut(s)	84, 471
Fnu4HI	GCNGC	7 cut(s)	75, 78, 156, 260, 434, 456, 576
FokI	GGATG	4 cut(s)	218, 542, 674, 707
Fsp4HI	GCNGC	7 cut(s)	75, 78, 156, 260, 434, 456, 576
FspBI	CTAG	1 cut(s)	437
GluI	GCNGC	7 cut(s)	75, 78, 156, 260, 434, 456, 576
GsuI	CTGGAG	2 cut(s)	204, 774
HaeIII	GGCC	1 cut(s)	764
HapII	CCGG	1 cut(s)	582
Hin1II	CATG	6 cut(s)	91, 98, 201, 205, 418, 626
HindIII	AAGCTT	1 cut(s)	269
HpaII	CCGG	1 cut(s)	582
Hpy166II	GTNNAC	2 cut(s)	85, 472
Hpy188I	TCNGA	3 cut(s)	484, 556, 757
Hpy188III	TCNNGA	3 cut(s)	587, 682, 806
Hpy8I	GTNNAC	2 cut(s)	85, 472
HpyAV	CCTTC	7 cut(s)	57, 321, 517, 648, 650, 652, 754
HpyCH4III	ACNGT	2 cut(s)	361, 379
HpyCH4IV	ACGT	2 cut(s)	465, 801
HpyF10VI	GCNNNNNNNGC	3 cut(s)	207, 268, 439
HpyF3I	CTNAG	1 cut(s)	756
HpySE526I	ACGT	2 cut(s)	465, 801
Hsp92II	CATG	6 cut(s)	91, 98, 201, 205, 418, 626
Kzo9I	GATC	4 cut(s)	233, 371, 618, 627
LmnI	GCTCC	3 cut(s)	430, 452, 725
Lsp1109I	GCAGC	7 cut(s)	64, 86, 167, 246, 420, 442, 587
LweI	GCATC	5 cut(s)	61, 339, 520, 652, 685
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	2 cut(s)	465, 801
MaeIII	GTNAC	3 cut(s)	193, 330, 393
MalI	GATC	4 cut(s)	235, 373, 620, 629
MboI	GATC	4 cut(s)	233, 371, 618, 627
MboII	GAAGA	6 cut(s)	188, 501, 504, 529, 532, 776
MflI	RGATCY	3 cut(s)	233, 371, 618
MhlI	GDGCHC	1 cut(s)	722
MluCI	AATT	3 cut(s)	40, 215, 302
Mph1103I	ATGCAT	1 cut(s)	203
MroXI	GAANNNNTTC	2 cut(s)	217, 499
MseI	TTAA	2 cut(s)	9, 305
MspA1I	CMGCKG	2 cut(s)	77, 158
MspI	CCGG	1 cut(s)	582
MspR9I	CCNGG	2 cut(s)	427, 792
MvaI	CCWGG	2 cut(s)	427, 792
MwoI	GCNNNNNNNGC	3 cut(s)	207, 268, 439
NcoI	CCATGG	1 cut(s)	414
NdeII	GATC	4 cut(s)	233, 371, 618, 627
NlaIII	CATG	6 cut(s)	91, 98, 201, 205, 418, 626
NlaIV	GGNNCC	1 cut(s)	373
NmuCI	GTSAC	1 cut(s)	393
NsiI	ATGCAT	1 cut(s)	203
NspI	RCATGY	2 cut(s)	91, 201
PaqCI	CACCTGC	1 cut(s)	298
PciI	ACATGT	1 cut(s)	87
PcsI	WCGNNNNNNNCGW	1 cut(s)	471
PdmI	GAANNNNTTC	2 cut(s)	217, 499
PkrI	GCNGC	7 cut(s)	76, 79, 157, 261, 435, 457, 577
PmaCI	CACGTG	1 cut(s)	466
PmlI	CACGTG	1 cut(s)	466
Ppu21I	YACGTR	1 cut(s)	466
PpuMI	RGGWCCY	1 cut(s)	808
PscI	ACATGT	1 cut(s)	87
Psp1406I	AACGTT	1 cut(s)	801
Psp5II	RGGWCCY	1 cut(s)	808
Psp6I	CCWGG	2 cut(s)	425, 790
PspCI	CACGTG	1 cut(s)	466
PspGI	CCWGG	2 cut(s)	425, 790
PspN4I	GGNNCC	1 cut(s)	373
PspPI	GGNCC	2 cut(s)	687, 808
PspPPI	RGGWCCY	1 cut(s)	808
PstI	CTGCAG	1 cut(s)	82
PsuI	RGATCY	3 cut(s)	233, 371, 618
PvuII	CAGCTG	2 cut(s)	77, 158
RsaI	GTAC	1 cut(s)	728
RsaNI	GTAC	1 cut(s)	727
SaqAI	TTAA	2 cut(s)	9, 305
SatI	GCNGC	7 cut(s)	75, 78, 156, 260, 434, 456, 576
Sau3AI	GATC	4 cut(s)	233, 371, 618, 627
Sau96I	GGNCC	2 cut(s)	687, 808
ScrFI	CCNGG	2 cut(s)	427, 792
SduI	GDGCHC	1 cut(s)	722
SfaNI	GCATC	5 cut(s)	61, 339, 520, 652, 685
SfcI	CTRYAG	1 cut(s)	78
SinI	GGWCC	2 cut(s)	687, 808
Sse9I	AATT	3 cut(s)	40, 215, 302
SsiI	CCGC	2 cut(s)	210, 369
SspMI	CTAG	1 cut(s)	437
StyD4I	CCNGG	2 cut(s)	425, 790
StyI	CCWWGG	5 cut(s)	24, 143, 405, 414, 690
TaaI	ACNGT	2 cut(s)	361, 379
TaiI	ACGT	2 cut(s)	468, 804
TaqI	TCGA	2 cut(s)	133, 588
TaqII	GACCGA	1 cut(s)	606
TasI	AATT	3 cut(s)	40, 215, 302
Tru1I	TTAA	2 cut(s)	9, 305
Tru9I	TTAA	2 cut(s)	9, 305
TscAI	CASTG	1 cut(s)	384
TseFI	GTSAC	1 cut(s)	393
TseI	GCWGC	7 cut(s)	74, 77, 155, 259, 433, 455, 575
Tsp45I	GTSAC	1 cut(s)	393
TspRI	CASTG	1 cut(s)	384
VpaK11BI	GGWCC	2 cut(s)	687, 808
XapI	RAATTY	1 cut(s)	215
XceI	RCATGY	2 cut(s)	91, 201
XcmI	CCANNNNNNNNNTGG	1 cut(s)	101
XmiI	GTMKAC	2 cut(s)	84, 471
XmnI	GAANNNNTTC	2 cut(s)	217, 499
XspI	CTAG	1 cut(s)	437
Zsp2I	ATGCAT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.