Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001881

Physical Location & Seq

Genomic Coordinates Forward (+)

36527446 .. 36528907

Gene Structure 1462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G024710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGCGCAAATTCAAGGATTTCCTCCTTACTGCAGGAAGAAAGGACGCACATTTGGTCAAAATCAAGAGAACGAAGGATGTTGTGAAGTTCACGGTTCGGTGCTCAAAGTACCTTTACACGTCACCCTTTGCGTGCTTGAGCTTGCAGGACCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L38e

Protein Analysis

51

Amino Acids

5.98

Weight (kDa)

10.02

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L38e	PF01781	2 - 40	2.1e-14	Ribosomal L38e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43460 AT3G59540
fragaria_vesca	FvH4_2g11140 FvH4_2g12030 FvH4_3g31637 FvH4_6g00180 FvH4_6g00180
malus_domestica	MD03G1210200.v1.1 MD04G1045900.v1.1 MD04G1247500.v1.1 MD05G1254000.v1.1 MD05G1339000.v1.1 MD11G1200200.v1.1 MD12G1262900.v1.1 MD13G1258200.v1.1 MD15G1353900.v1.1
prunus_persica	Prupe.1G193400_v2.0.a1 Prupe.1G198900_v2.0.a1 Prupe.6G363900_v2.0.a1 Prupe.7G035900_v2.0.a1
pyrus_communis	pycom04g21820 pycom12g24090
rosa_chinensis	RchiOBHm_Chr3g0447551 RchiOBHm_Chr6g0269441
rosa_laevigata	RLG00000025704
rosa_multiflora	Rmu_co8253789.1_g000001 Rmu_sc0000743.1_g000005 Rmu_sc0003550.1_g000008 Rmu_sc0027627.1_g000001 Rmu_sc0037294.1_g000003
rosa_roxburghii	Rroxscaffold_7G00198720
rosa_rugosa	Rorug02G0602700 Rorug02G0602800 Rorug05G0286200 Rorug05G0286200 Rorug06G0047800
rosa_samantha	Rh2CG566400 Rh3CG339700 Rh5CG368600 Rh5DG420000 Rh6CG167700 Rh6DG159700
rosa_wichuraiana	Rw2G024710 Rw3G000200 Rw5G036920 Rw6G014480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AcsI	RAATTY	1 cut(s)	8
AfaI	GTAC	1 cut(s)	110
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	1 cut(s)	13
AjiI	CACGTC	1 cut(s)	120
AluBI	AGCT	1 cut(s)	141
AluI	AGCT	1 cut(s)	141
Alw21I	GWGCWC	1 cut(s)	104
AlwNI	CAGNNNCTG	1 cut(s)	151
ApoI	RAATTY	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	114
AvaII	GGWCC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	104
BfmI	CTRYAG	1 cut(s)	30
Bme18I	GGWCC	1 cut(s)	148
BmgBI	CACGTC	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	148
BseGI	GGATG	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	104
BspMAI	CTGCAG	1 cut(s)	34
Bst4CI	ACNGT	1 cut(s)	94
BstC8I	GCNNGC	2 cut(s)	133, 143
BstF5I	GGATG	1 cut(s)	82
BstHHI	GCGC	1 cut(s)	6
BstSFI	CTRYAG	1 cut(s)	30
BtrI	CACGTC	1 cut(s)	120
BtsCI	GGATG	1 cut(s)	82
Cac8I	GCNNGC	2 cut(s)	133, 143
CaiI	CAGNNNCTG	1 cut(s)	151
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	148
CseI	GACGC	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	109
CviJI	RGCY	1 cut(s)	141
CviKI_1	RGCY	1 cut(s)	141
CviQI	GTAC	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	148
EcoO109I	RGGNCCY	1 cut(s)	148
FokI	GGATG	1 cut(s)	89
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	53
HhaI	GCGC	1 cut(s)	6
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HphI	GGTGA	1 cut(s)	114
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188III	TCNNGA	1 cut(s)	64
Hpy8I	GTNNAC	1 cut(s)	90
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	119
HpyCH4V	TGCA	2 cut(s)	32, 145
HpySE526I	ACGT	1 cut(s)	119
HspAI	GCGC	1 cut(s)	4
LpnPI	CCDG	2 cut(s)	18, 131
MaeII	ACGT	1 cut(s)	119
MaeIII	GTNAC	1 cut(s)	120
MboII	GAAGA	1 cut(s)	48
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	1 cut(s)	8
MnlI	CCTC	1 cut(s)	32
NmuCI	GTSAC	1 cut(s)	120
NsbI	TGCGCA	1 cut(s)	5
PpuMI	RGGWCCY	1 cut(s)	148
Psp5II	RGGWCCY	1 cut(s)	148
PspPI	GGNCC	1 cut(s)	148
PspPPI	RGGWCCY	1 cut(s)	148
PstI	CTGCAG	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	151
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
Sau96I	GGNCC	1 cut(s)	148
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	4 cut(s)	114, 122, 143, 153
SfcI	CTRYAG	1 cut(s)	30
SgeI	CNNG	7 cut(s)	25, 45, 76, 103, 130, 144, 148
SinI	GGWCC	1 cut(s)	148
SmlI	CTYRAG	1 cut(s)	136
SmoI	CTYRAG	1 cut(s)	136
Sse9I	AATT	1 cut(s)	8
TaaI	ACNGT	1 cut(s)	94
TaiI	ACGT	1 cut(s)	122
TasI	AATT	1 cut(s)	8
TseFI	GTSAC	1 cut(s)	120
Tsp45I	GTSAC	1 cut(s)	120
VpaK11BI	GGWCC	1 cut(s)	148
XapI	RAATTY	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.