RLG00000025704

Belongs to the eukaryotic ribosomal protein eL38 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001881
Physical Location & Seq
Forward (+)
47772686 .. 47773377
692 bp
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UTR
Exon/CDS
Intron
RLM00000025704

Sequence Viewer

Length: 306 bp
ATGGATCAGGGAAGATGTTATTTTGTGTATGCCTTTGCTGCTTTAGACCCTATATCATTAAACTATGGACCTTCTGATCTGCTATCAACCTTTGTGCATGATGTGCCGAAGCAAATCCATGAGATCAAGGATTTCCTCCTGACTGCAAGAAGGAAGGATGCCCGTTCTGTGAAAATCAAGAAGACGAAGGACGCAGTCAAGTTCAAGGTTCGATGCAACCTTTTCTTTATTACTATTAAGGAAGCTTTTGCAACTCGTATTTCTGGATCTGCTGACCTTTACAAAGTAACCATGGCTGTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L38e

Protein Analysis

102

Amino Acids

11.48

Weight (kDa)

9.61

Isoelectric Point (pI)

22.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L38e PF01781 36 - 79 2.3e-17 Ribosomal L38e protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 12, 274
AgsI TTSAA 1 cut(s) 205
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
AlwI GGATC 2 cut(s) 12, 274
ApeKI GCWGC 1 cut(s) 38
AspS9I GGNCC 1 cut(s) 68
AvaII GGWCC 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 25
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 68
BmsI GCATC 2 cut(s) 148, 203
BpiI GAAGAC 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 291
BseGI GGATG 1 cut(s) 163
BseXI GCAGC 1 cut(s) 25
Bsp143I GATC 4 cut(s) 4, 76, 123, 266
Bsp19I CCATGG 1 cut(s) 291
BspPI GGATC 2 cut(s) 12, 274
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 4 cut(s) 4, 76, 123, 266
BssT1I CCWWGG 1 cut(s) 291
BstAPI GCANNNNNTGC 1 cut(s) 103
BstDSI CCRYGG 1 cut(s) 291
BstF5I GGATG 1 cut(s) 163
BstKTI GATC 4 cut(s) 7, 79, 126, 269
BstMBI GATC 4 cut(s) 4, 76, 123, 266
BstMWI GCNNNNNNNGC 2 cut(s) 38, 103
BstV1I GCAGC 1 cut(s) 25
BstV2I GAAGAC 1 cut(s) 188
BstX2I RGATCY 1 cut(s) 266
BstYI RGATCY 1 cut(s) 266
BtgI CCRYGG 1 cut(s) 291
BtsCI GGATG 1 cut(s) 163
Cfr13I GGNCC 1 cut(s) 68
CseI GACGC 1 cut(s) 200
CviAII CATG 3 cut(s) 98, 119, 292
CviJI RGCY 2 cut(s) 245, 296
CviKI_1 RGCY 2 cut(s) 245, 296
DpnI GATC 4 cut(s) 6, 78, 125, 268
DpnII GATC 4 cut(s) 4, 76, 123, 266
Eco130I CCWWGG 1 cut(s) 291
Eco47I GGWCC 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 291
FaeI CATG 3 cut(s) 101, 122, 295
FaiI YATR 7 cut(s) 30, 53, 66, 99, 120, 293, 304
FatI CATG 3 cut(s) 97, 118, 291
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 1 cut(s) 39
GluI GCNGC 1 cut(s) 39
HgaI GACGC 1 cut(s) 200
Hin1II CATG 3 cut(s) 101, 122, 295
HindIII AAGCTT 1 cut(s) 243
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 3 cut(s) 139, 178, 264
HpyAV CCTTC 4 cut(s) 81, 144, 148, 181
HpyCH4V TGCA 4 cut(s) 97, 146, 216, 251
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 103
Hsp92II CATG 3 cut(s) 101, 122, 295
Kzo9I GATC 4 cut(s) 4, 76, 123, 266
LpnPI CCDG 2 cut(s) 152, 249
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 2 cut(s) 148, 203
MaeIII GTNAC 1 cut(s) 286
MalI GATC 4 cut(s) 6, 78, 125, 268
MboI GATC 4 cut(s) 4, 76, 123, 266
MboII GAAGA 2 cut(s) 24, 193
MflI RGATCY 1 cut(s) 266
MnlI CCTC 1 cut(s) 146
MseI TTAA 2 cut(s) 59, 237
MwoI GCNNNNNNNGC 2 cut(s) 38, 103
NcoI CCATGG 1 cut(s) 291
NdeII GATC 4 cut(s) 4, 76, 123, 266
NlaIII CATG 3 cut(s) 101, 122, 295
PflFI GACNNNGTC 1 cut(s) 194
PkrI GCNGC 1 cut(s) 40
PspPI GGNCC 1 cut(s) 68
PsuI RGATCY 1 cut(s) 266
PsyI GACNNNGTC 1 cut(s) 194
SaqAI TTAA 2 cut(s) 59, 237
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 4 cut(s) 4, 76, 123, 266
Sau96I GGNCC 1 cut(s) 68
SetI ASST 6 cut(s) 73, 92, 210, 222, 247, 279
SfaNI GCATC 2 cut(s) 148, 203
SinI GGWCC 1 cut(s) 68
StyI CCWWGG 1 cut(s) 291
TaqI TCGA 1 cut(s) 211
Tru1I TTAA 2 cut(s) 59, 237
Tru9I TTAA 2 cut(s) 59, 237
TseI GCWGC 1 cut(s) 38
TspDTI ATGAA 1 cut(s) 291
Tth111I GACNNNGTC 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.