MD12G1262900.v1.1

Belongs to the eukaryotic ribosomal protein eL38 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0001881
Physical Location & Seq
Reverse (-)
32955248 .. 32957239
1992 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1262900.v1.1.491

Sequence Viewer

Length: 210 bp
ATGCCGAAGCAGATCCATGAGATTAAGGATTTCCTTCTAACCGCAAGAAGGAAGGATGCCCGCAATGTCAAAATCAAGAGGACCAAGGATGCTGTTAAGTTCAAGGTTCGGTGCTCCAAGTACCTTTACACACTTTGTGTGTTTGATTCCGACAAGGCCAACAAGTTGAAGCAATCTCTTCCTCCAGGTTTGAACGTTCAGGATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L38e

Protein Analysis

70

Amino Acids

8.05

Weight (kDa)

10.02

Isoelectric Point (pI)

50.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L38e PF01781 2 - 67 2.2e-34 Ribosomal L38e protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 42, 61
AclI AACGTT 1 cut(s) 195
AclWI GGATC 2 cut(s) 7, 197
AdeI CACNNNGTG 1 cut(s) 137
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 1 cut(s) 48
AgsI TTSAA 3 cut(s) 103, 169, 193
AjnI CCWGG 1 cut(s) 184
Alw21I GWGCWC 1 cut(s) 116
AlwI GGATC 2 cut(s) 7, 197
AoxI GGCC 1 cut(s) 156
AspS9I GGNCC 1 cut(s) 81
AvaII GGWCC 1 cut(s) 81
BamHI GGATCC 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 186
Bme1390I CCNGG 1 cut(s) 186
Bme18I GGWCC 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 81
BmiI GGNNCC 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 186
BmsI GCATC 2 cut(s) 46, 79
BpmI CTGGAG 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 84
Bsc4I CCNNNNNNNGG 1 cut(s) 48
Bse3DI GCAATG 1 cut(s) 70
BseBI CCWGG 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 2 cut(s) 61, 94
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMI GCAATG 1 cut(s) 70
BshFI GGCC 1 cut(s) 158
BsiHKAI GWGCWC 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 48
BsnI GGCC 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 2 cut(s) 12, 202
BspACI CCGC 2 cut(s) 42, 61
BspANI GGCC 1 cut(s) 158
BspLI GGNNCC 1 cut(s) 204
BspPI GGATC 2 cut(s) 7, 197
BsrDI GCAATG 1 cut(s) 70
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 2 cut(s) 12, 202
BssT1I CCWWGG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 186
Bst6I CTCTTC 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 61
BstF5I GGATG 2 cut(s) 61, 94
BstKTI GATC 2 cut(s) 15, 205
BstMBI GATC 2 cut(s) 12, 202
BstNI CCWGG 1 cut(s) 186
BstSCI CCNGG 1 cut(s) 184
BstX2I RGATCY 2 cut(s) 12, 202
BstYI RGATCY 2 cut(s) 12, 202
BsuRI GGCC 1 cut(s) 158
BtsCI GGATG 2 cut(s) 61, 94
Cac8I GCNNGC 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 81
Csp6I GTAC 1 cut(s) 121
CviAII CATG 1 cut(s) 17
CviJI RGCY 1 cut(s) 158
CviKI_1 RGCY 1 cut(s) 158
CviQI GTAC 1 cut(s) 121
DpnI GATC 2 cut(s) 14, 204
DpnII GATC 2 cut(s) 12, 202
DraIII CACNNNGTG 1 cut(s) 137
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 1 cut(s) 20
FaiI YATR 1 cut(s) 18
FatI CATG 1 cut(s) 16
FauI CCCGC 1 cut(s) 68
FokI GGATG 2 cut(s) 68, 101
GsuI CTGGAG 1 cut(s) 168
HaeIII GGCC 1 cut(s) 158
Hin1II CATG 1 cut(s) 20
HinfI GANTC 1 cut(s) 146
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 2 cut(s) 76, 200
HpyAV CCTTC 3 cut(s) 42, 44, 46
HpyCH4IV ACGT 1 cut(s) 195
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 1 cut(s) 20
Kzo9I GATC 2 cut(s) 12, 202
LmnI GCTCC 1 cut(s) 119
LpnPI CCDG 3 cut(s) 171, 185, 198
LweI GCATC 2 cut(s) 46, 79
MaeII ACGT 1 cut(s) 195
MalI GATC 2 cut(s) 14, 204
MboI GATC 2 cut(s) 12, 202
MboII GAAGA 1 cut(s) 170
MflI RGATCY 2 cut(s) 12, 202
MhlI GDGCHC 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 2 cut(s) 72, 192
MseI TTAA 2 cut(s) 24, 96
MspR9I CCNGG 1 cut(s) 186
MvaI CCWGG 1 cut(s) 186
NdeII GATC 2 cut(s) 12, 202
NlaIII CATG 1 cut(s) 20
NlaIV GGNNCC 1 cut(s) 204
PfeI GAWTC 1 cut(s) 146
Psp1406I AACGTT 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 204
PspPI GGNCC 1 cut(s) 81
PsuI RGATCY 2 cut(s) 12, 202
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SaqAI TTAA 2 cut(s) 24, 96
Sau3AI GATC 2 cut(s) 12, 202
Sau96I GGNCC 1 cut(s) 81
ScrFI CCNGG 1 cut(s) 186
SduI GDGCHC 1 cut(s) 116
SetI ASST 4 cut(s) 108, 126, 190, 198
SfaNI GCATC 2 cut(s) 46, 79
SinI GGWCC 1 cut(s) 81
SsiI CCGC 2 cut(s) 42, 61
StyD4I CCNGG 1 cut(s) 184
StyI CCWWGG 1 cut(s) 84
TaiI ACGT 1 cut(s) 198
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 2 cut(s) 24, 96
Tru9I TTAA 2 cut(s) 24, 96
VpaK11BI GGWCC 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.