Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000743.1

Orthogroup ID

OG0001881

Physical Location & Seq

Genomic Coordinates Reverse (-)

26484 .. 27796

Gene Structure 1313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000743.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

atgccgaagcaaatccatgagatcaaggatttcctcctgactgcaagaaggaaggatgcccgttctgtgaaaatcaagaagacgaaggacgcagtcaagttcaaggttcgatgctccaagtacctttacacactttgtgtgtttgatactgagaaggctgataagttgaagcaatcccttcctccaggtttgagcgtccaggatctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L38e

Protein Analysis

69

Amino Acids

8.01

Weight (kDa)

9.85

Isoelectric Point (pI)

43.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43460 AT3G59540
fragaria_vesca	FvH4_2g11140 FvH4_2g12030 FvH4_3g31637 FvH4_6g00180 FvH4_6g00180
malus_domestica	MD03G1210200.v1.1 MD04G1045900.v1.1 MD04G1247500.v1.1 MD05G1254000.v1.1 MD05G1339000.v1.1 MD11G1200200.v1.1 MD12G1262900.v1.1 MD13G1258200.v1.1 MD15G1353900.v1.1
prunus_persica	Prupe.1G193400_v2.0.a1 Prupe.1G198900_v2.0.a1 Prupe.6G363900_v2.0.a1 Prupe.7G035900_v2.0.a1
pyrus_communis	pycom04g21820 pycom12g24090
rosa_chinensis	RchiOBHm_Chr3g0447551 RchiOBHm_Chr6g0269441
rosa_laevigata	RLG00000025704
rosa_multiflora	Rmu_co8253789.1_g000001 Rmu_sc0000743.1_g000005 Rmu_sc0003550.1_g000008 Rmu_sc0027627.1_g000001 Rmu_sc0037294.1_g000003
rosa_roxburghii	Rroxscaffold_7G00198720
rosa_rugosa	Rorug02G0602700 Rorug02G0602800 Rorug05G0286200 Rorug05G0286200 Rorug06G0047800
rosa_samantha	Rh2CG566400 Rh3CG339700 Rh5CG368600 Rh5DG420000 Rh6CG167700 Rh6DG159700
rosa_wichuraiana	Rw2G024710 Rw3G000200 Rw5G036920 Rw6G014480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AdeI	CACNNNGTG	1 cut(s)	137
AfaI	GTAC	1 cut(s)	122
AgsI	TTSAA	2 cut(s)	103, 169
AjnI	CCWGG	2 cut(s)	184, 198
AlwNI	CAGNNNCTG	1 cut(s)	205
BbsI	GAAGAC	1 cut(s)	86
BciT130I	CCWGG	2 cut(s)	186, 200
Bme1390I	CCNGG	2 cut(s)	186, 200
BmrFI	CCNGG	2 cut(s)	186, 200
BmsI	GCATC	2 cut(s)	46, 101
BpiI	GAAGAC	1 cut(s)	86
BpmI	CTGGAG	1 cut(s)	168
BseBI	CCWGG	2 cut(s)	186, 200
BseGI	GGATG	1 cut(s)	61
BseMII	CTCAG	1 cut(s)	141
Bsp143I	GATC	2 cut(s)	21, 202
BspCNI	CTCAG	1 cut(s)	142
BssMI	GATC	2 cut(s)	21, 202
Bst2UI	CCWGG	2 cut(s)	186, 200
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	61
BstKTI	GATC	2 cut(s)	24, 205
BstMBI	GATC	2 cut(s)	21, 202
BstNI	CCWGG	2 cut(s)	186, 200
BstSCI	CCNGG	2 cut(s)	184, 198
BstV2I	GAAGAC	1 cut(s)	86
BstX2I	RGATCY	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	202
BtsCI	GGATG	1 cut(s)	61
CaiI	CAGNNNCTG	1 cut(s)	205
CseI	GACGC	2 cut(s)	98, 184
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	1 cut(s)	17
CviJI	RGCY	1 cut(s)	158
CviKI_1	RGCY	1 cut(s)	158
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	2 cut(s)	23, 204
DpnII	GATC	2 cut(s)	21, 202
DraIII	CACNNNGTG	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	184, 198
FaeI	CATG	1 cut(s)	20
FaiI	YATR	1 cut(s)	18
FatI	CATG	1 cut(s)	16
FokI	GGATG	1 cut(s)	68
GsuI	CTGGAG	1 cut(s)	168
HgaI	GACGC	2 cut(s)	98, 184
Hin1II	CATG	1 cut(s)	20
Hpy188III	TCNNGA	2 cut(s)	37, 76
HpyAV	CCTTC	5 cut(s)	42, 46, 79, 148, 188
HpyCH4V	TGCA	1 cut(s)	44
HpyF3I	CTNAG	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	20
Kzo9I	GATC	2 cut(s)	21, 202
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	4 cut(s)	50, 171, 185, 198
LweI	GCATC	2 cut(s)	46, 101
MalI	GATC	2 cut(s)	23, 204
MboI	GATC	2 cut(s)	21, 202
MboII	GAAGA	1 cut(s)	91
MflI	RGATCY	1 cut(s)	202
MnlI	CCTC	2 cut(s)	44, 192
MspR9I	CCNGG	2 cut(s)	186, 200
MvaI	CCWGG	2 cut(s)	186, 200
NdeII	GATC	2 cut(s)	21, 202
NlaIII	CATG	1 cut(s)	20
PflFI	GACNNNGTC	1 cut(s)	92
PfoI	TCCNGGA	1 cut(s)	198
Psp6I	CCWGG	2 cut(s)	184, 198
PspGI	CCWGG	2 cut(s)	184, 198
PstNI	CAGNNNCTG	1 cut(s)	205
PsuI	RGATCY	1 cut(s)	202
PsyI	GACNNNGTC	1 cut(s)	92
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
Sau3AI	GATC	2 cut(s)	21, 202
ScrFI	CCNGG	2 cut(s)	186, 200
SetI	ASST	3 cut(s)	108, 126, 190
SfaNI	GCATC	2 cut(s)	46, 101
StyD4I	CCNGG	2 cut(s)	184, 198
TaqI	TCGA	1 cut(s)	109
Tth111I	GACNNNGTC	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.