Rh5DG420000

Belongs to the eukaryotic ribosomal protein eL38 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001881
Physical Location & Seq
Forward (+)
66872735 .. 66872899
165 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG420000.1

Sequence Viewer

Length: 165 bp
ATGCCGAAGCAAATTCATGAGATCAAGGATTTCCTCCTCACTGCAAGAAGGAAGGACCCCCGTCCTGTCAAAATCAAGAGAACGAAGGATGCTGTGAAGTTCAAGGTTGATTCCGAGGAGGTGGACAAGTTGAAGCAATCTCTTCCTTTAGGCTTGAGCGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L38e

Protein Analysis

54

Amino Acids

6.27

Weight (kDa)

9.99

Isoelectric Point (pI)

58.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L38e PF01781 2 - 36 1.2e-11 Ribosomal L38e protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 12
AgsI TTSAA 2 cut(s) 103, 133
ApoI RAATTY 1 cut(s) 12
AspS9I GGNCC 1 cut(s) 55
AvaII GGWCC 1 cut(s) 55
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 57
BmsI GCATC 1 cut(s) 79
BoxI GACNNNNGTC 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 1 cut(s) 94
BseRI GAGGAG 2 cut(s) 26, 131
Bsp143I GATC 1 cut(s) 21
BspHI TCATGA 1 cut(s) 16
BspLI GGNNCC 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 1 cut(s) 21
Bst6I CTCTTC 1 cut(s) 147
BstF5I GGATG 1 cut(s) 94
BstKTI GATC 1 cut(s) 24
BstMBI GATC 1 cut(s) 21
BstPAI GACNNNNGTC 1 cut(s) 60
BtsCI GGATG 1 cut(s) 94
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 39
CciI TCATGA 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 55
CviAII CATG 1 cut(s) 17
CviJI RGCY 1 cut(s) 153
CviKI_1 RGCY 1 cut(s) 153
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 55
EcoO109I RGGNCCY 1 cut(s) 55
FaeI CATG 1 cut(s) 20
FaiI YATR 1 cut(s) 18
FatI CATG 1 cut(s) 16
FokI GGATG 1 cut(s) 101
Hin1II CATG 1 cut(s) 20
HinfI GANTC 1 cut(s) 110
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 2 cut(s) 17, 76
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 3 cut(s) 42, 46, 79
HpyCH4V TGCA 1 cut(s) 44
Hsp92II CATG 1 cut(s) 20
Kzo9I GATC 1 cut(s) 21
LpnPI CCDG 1 cut(s) 78
LweI GCATC 1 cut(s) 79
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 1 cut(s) 134
MluCI AATT 1 cut(s) 12
MnlI CCTC 4 cut(s) 44, 47, 109, 112
NdeII GATC 1 cut(s) 21
NlaIII CATG 1 cut(s) 20
NlaIV GGNNCC 1 cut(s) 57
PagI TCATGA 1 cut(s) 16
PfeI GAWTC 1 cut(s) 110
PpuMI RGGWCCY 1 cut(s) 55
PshAI GACNNNNGTC 1 cut(s) 60
Psp5II RGGWCCY 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 57
PspPI GGNCC 1 cut(s) 55
PspPPI RGGWCCY 1 cut(s) 55
Sau3AI GATC 1 cut(s) 21
Sau96I GGNCC 1 cut(s) 55
SetI ASST 2 cut(s) 108, 123
SfaNI GCATC 1 cut(s) 79
SgeI CNNG 9 cut(s) 29, 37, 57, 72, 77, 88, 115, 127, 139
SinI GGWCC 1 cut(s) 55
SmlI CTYRAG 1 cut(s) 154
SmoI CTYRAG 1 cut(s) 154
Sse9I AATT 1 cut(s) 12
TasI AATT 1 cut(s) 12
TfiI GAWTC 1 cut(s) 110
TscAI CASTG 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 5
TspRI CASTG 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 55
XapI RAATTY 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.