Rh2CG566400

Belongs to the eukaryotic ribosomal protein eL38 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001881
Physical Location & Seq
Reverse (-)
74734644 .. 74736137
1494 bp
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UTR
Exon/CDS
Intron
Rh2CG566400.1

Sequence Viewer

Length: 387 bp
ATGGATCTGGGAAGATGTTATTTTGTGTATGCCTTTGCTGCTTTAGACCCTATATCATTAAACTATGGACCTTCTGGTCTGCTATCAACCTTTGTGCATGATGTGCCGAAGCAAATCCATGAGATCAAGGATTTCCTCCTGACTGCAAGAAGGAAGGATGCCCGTTCTGTGAAAATCAAGAAGACGAAGGACGCAATCAAGTTCAAGGTTCGATGCAACCTTTACTTTATTACTATTAAGGAAGCTTTTGCAACTCGTATATCTGGATCTGCTGACCTTTACAAACTGTACCAAAGGGGATTTTGTCATTATAGCGATTTCACTGCTGCTGACTTTGTGGACCATCCACCTCCACTTTCAGTTCTGGAGACTGTAGCTACTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L38e

Protein Analysis

128

Amino Acids

14.53

Weight (kDa)

9.15

Isoelectric Point (pI)

24.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L38e PF01781 36 - 79 1.2e-17 Ribosomal L38e protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 75
AclWI GGATC 2 cut(s) 12, 274
AfaI GTAC 1 cut(s) 290
AgsI TTSAA 1 cut(s) 205
AluBI AGCT 2 cut(s) 245, 377
AluI AGCT 2 cut(s) 245, 377
Alw26I GTCTC 1 cut(s) 362
AlwI GGATC 2 cut(s) 12, 274
ApeKI GCWGC 2 cut(s) 38, 326
AspS9I GGNCC 2 cut(s) 68, 340
AvaII GGWCC 2 cut(s) 68, 340
BbsI GAAGAC 1 cut(s) 188
BbvI GCAGC 2 cut(s) 25, 313
BccI CCATC 1 cut(s) 351
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BcoDI GTCTC 1 cut(s) 362
BfmI CTRYAG 1 cut(s) 372
BisI GCNGC 2 cut(s) 39, 327
BlsI GCNGC 2 cut(s) 40, 328
Bme18I GGWCC 2 cut(s) 68, 340
BmgT120I GGNCC 2 cut(s) 68, 340
BmsI GCATC 2 cut(s) 148, 203
BpiI GAAGAC 1 cut(s) 188
BpmI CTGGAG 1 cut(s) 386
BseGI GGATG 2 cut(s) 163, 343
BseXI GCAGC 2 cut(s) 25, 313
BsmAI GTCTC 1 cut(s) 362
Bsp143I GATC 3 cut(s) 4, 123, 266
BspPI GGATC 2 cut(s) 12, 274
BssMI GATC 3 cut(s) 4, 123, 266
Bst4CI ACNGT 3 cut(s) 288, 373, 382
BstAPI GCANNNNNTGC 1 cut(s) 103
BstF5I GGATG 2 cut(s) 163, 343
BstKTI GATC 3 cut(s) 7, 126, 269
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 3 cut(s) 4, 123, 266
BstMWI GCNNNNNNNGC 2 cut(s) 38, 103
BstSFI CTRYAG 1 cut(s) 372
BstV1I GCAGC 2 cut(s) 25, 313
BstV2I GAAGAC 1 cut(s) 188
BstX2I RGATCY 2 cut(s) 4, 266
BstYI RGATCY 2 cut(s) 4, 266
BtsCI GGATG 2 cut(s) 163, 343
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 321
Cfr13I GGNCC 2 cut(s) 68, 340
CseI GACGC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 289
CviAII CATG 2 cut(s) 98, 119
CviJI RGCY 2 cut(s) 245, 377
CviKI_1 RGCY 2 cut(s) 245, 377
CviQI GTAC 1 cut(s) 289
DpnI GATC 3 cut(s) 6, 125, 268
DpnII GATC 3 cut(s) 4, 123, 266
DrdI GACNNNNNNGTC 1 cut(s) 75
DseDI GACNNNNNNGTC 1 cut(s) 75
Eco47I GGWCC 2 cut(s) 68, 340
FaeI CATG 2 cut(s) 101, 122
FaiI YATR 7 cut(s) 30, 53, 66, 99, 120, 260, 312
FatI CATG 2 cut(s) 97, 118
Fnu4HI GCNGC 2 cut(s) 39, 327
FokI GGATG 2 cut(s) 170, 330
Fsp4HI GCNGC 2 cut(s) 39, 327
GluI GCNGC 2 cut(s) 39, 327
GsuI CTGGAG 1 cut(s) 386
HgaI GACGC 1 cut(s) 200
Hin1II CATG 2 cut(s) 101, 122
HindIII AAGCTT 1 cut(s) 243
Hpy166II GTNNAC 1 cut(s) 340
Hpy188III TCNNGA 4 cut(s) 139, 178, 264, 365
Hpy8I GTNNAC 1 cut(s) 340
HpyAV CCTTC 4 cut(s) 81, 144, 148, 181
HpyCH4III ACNGT 3 cut(s) 288, 373, 382
HpyCH4V TGCA 4 cut(s) 97, 146, 216, 251
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 103
Hsp92II CATG 2 cut(s) 101, 122
Kzo9I GATC 3 cut(s) 4, 123, 266
LpnPI CCDG 4 cut(s) 60, 152, 249, 350
Lsp1109I GCAGC 2 cut(s) 25, 313
LweI GCATC 2 cut(s) 148, 203
MalI GATC 3 cut(s) 6, 125, 268
MboI GATC 3 cut(s) 4, 123, 266
MboII GAAGA 2 cut(s) 24, 193
MflI RGATCY 2 cut(s) 4, 266
MnlI CCTC 2 cut(s) 146, 360
MseI TTAA 2 cut(s) 59, 237
MwoI GCNNNNNNNGC 2 cut(s) 38, 103
NdeII GATC 3 cut(s) 4, 123, 266
NlaIII CATG 2 cut(s) 101, 122
PkrI GCNGC 2 cut(s) 40, 328
PspPI GGNCC 2 cut(s) 68, 340
PsuI RGATCY 2 cut(s) 4, 266
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
SaqAI TTAA 2 cut(s) 59, 237
SatI GCNGC 2 cut(s) 39, 327
Sau3AI GATC 3 cut(s) 4, 123, 266
Sau96I GGNCC 2 cut(s) 68, 340
SetI ASST 8 cut(s) 73, 92, 210, 222, 247, 279, 352, 379
SfaNI GCATC 2 cut(s) 148, 203
SfcI CTRYAG 1 cut(s) 372
SinI GGWCC 2 cut(s) 68, 340
TaaI ACNGT 3 cut(s) 288, 373, 382
TaqI TCGA 1 cut(s) 211
Tru1I TTAA 2 cut(s) 59, 237
Tru9I TTAA 2 cut(s) 59, 237
TscAI CASTG 1 cut(s) 328
TseI GCWGC 2 cut(s) 38, 326
TspRI CASTG 1 cut(s) 328
VpaK11BI GGWCC 2 cut(s) 68, 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.