Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027627.1

Orthogroup ID

OG0001881

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 635

Gene Structure 635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027627.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ccgaagcaaatccatgagatcaaggatttcctcctgactgcaagaaggaaggatgcccgttctgtgaaaatcaagaagacgaaggacgcaatcaagttcaaggttcgatgcaacctttactttattactattaaggaagcttttgcaactcgtatatctggatctcaaatccatgagatcaaggatttcctcttgactgcaagaaggaaggatgcccgttctgtgaaaatcaagaagacgaaggacgcagtcaagttcaaggttggatgcaaccttttctttattactattaaggaagcttttgcaactcgtatttctggatctgctgacctttacaaagtaagcatggctgtttcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L38e

Protein Analysis

119

Amino Acids

13.64

Weight (kDa)

10.32

Isoelectric Point (pI)

22.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43460 AT3G59540
fragaria_vesca	FvH4_2g11140 FvH4_2g12030 FvH4_3g31637 FvH4_6g00180 FvH4_6g00180
malus_domestica	MD03G1210200.v1.1 MD04G1045900.v1.1 MD04G1247500.v1.1 MD05G1254000.v1.1 MD05G1339000.v1.1 MD11G1200200.v1.1 MD12G1262900.v1.1 MD13G1258200.v1.1 MD15G1353900.v1.1
prunus_persica	Prupe.1G193400_v2.0.a1 Prupe.1G198900_v2.0.a1 Prupe.6G363900_v2.0.a1 Prupe.7G035900_v2.0.a1
pyrus_communis	pycom04g21820 pycom12g24090
rosa_chinensis	RchiOBHm_Chr3g0447551 RchiOBHm_Chr6g0269441
rosa_laevigata	RLG00000025704
rosa_multiflora	Rmu_co8253789.1_g000001 Rmu_sc0000743.1_g000005 Rmu_sc0003550.1_g000008 Rmu_sc0027627.1_g000001 Rmu_sc0037294.1_g000003
rosa_roxburghii	Rroxscaffold_7G00198720
rosa_rugosa	Rorug02G0602700 Rorug02G0602800 Rorug05G0286200 Rorug05G0286200 Rorug06G0047800
rosa_samantha	Rh2CG566400 Rh3CG339700 Rh5CG368600 Rh5DG420000 Rh6CG167700 Rh6DG159700
rosa_wichuraiana	Rw2G024710 Rw3G000200 Rw5G036920 Rw6G014480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	169, 328
AgsI	TTSAA	2 cut(s)	100, 259
AluBI	AGCT	2 cut(s)	140, 299
AluI	AGCT	2 cut(s)	140, 299
AlwI	GGATC	2 cut(s)	169, 328
BbsI	GAAGAC	2 cut(s)	83, 242
BmsI	GCATC	4 cut(s)	43, 98, 202, 257
BpiI	GAAGAC	2 cut(s)	83, 242
BseGI	GGATG	3 cut(s)	58, 217, 272
Bsp143I	GATC	4 cut(s)	18, 161, 177, 320
BspPI	GGATC	2 cut(s)	169, 328
BssMI	GATC	4 cut(s)	18, 161, 177, 320
BstF5I	GGATG	3 cut(s)	58, 217, 272
BstKTI	GATC	4 cut(s)	21, 164, 180, 323
BstMBI	GATC	4 cut(s)	18, 161, 177, 320
BstV2I	GAAGAC	2 cut(s)	83, 242
BstX2I	RGATCY	2 cut(s)	161, 320
BstYI	RGATCY	2 cut(s)	161, 320
BtsCI	GGATG	3 cut(s)	58, 217, 272
CseI	GACGC	2 cut(s)	95, 254
CviAII	CATG	3 cut(s)	14, 173, 346
CviJI	RGCY	3 cut(s)	140, 299, 350
CviKI_1	RGCY	3 cut(s)	140, 299, 350
DpnI	GATC	4 cut(s)	20, 163, 179, 322
DpnII	GATC	4 cut(s)	18, 161, 177, 320
FaeI	CATG	3 cut(s)	17, 176, 349
FaiI	YATR	5 cut(s)	15, 155, 174, 347, 358
FatI	CATG	3 cut(s)	13, 172, 345
FokI	GGATG	3 cut(s)	65, 224, 279
HgaI	GACGC	2 cut(s)	95, 254
Hin1II	CATG	3 cut(s)	17, 176, 349
HindIII	AAGCTT	2 cut(s)	138, 297
Hpy188III	TCNNGA	6 cut(s)	34, 73, 159, 193, 232, 318
HpyAV	CCTTC	6 cut(s)	39, 43, 76, 198, 202, 235
HpyCH4V	TGCA	6 cut(s)	41, 111, 146, 200, 270, 305
Hsp92II	CATG	3 cut(s)	17, 176, 349
Kzo9I	GATC	4 cut(s)	18, 161, 177, 320
LpnPI	CCDG	3 cut(s)	47, 144, 303
LweI	GCATC	4 cut(s)	43, 98, 202, 257
MalI	GATC	4 cut(s)	20, 163, 179, 322
MboI	GATC	4 cut(s)	18, 161, 177, 320
MboII	GAAGA	2 cut(s)	88, 247
MflI	RGATCY	2 cut(s)	161, 320
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	2 cut(s)	41, 200
MseI	TTAA	2 cut(s)	132, 291
NdeII	GATC	4 cut(s)	18, 161, 177, 320
NlaIII	CATG	3 cut(s)	17, 176, 349
PflFI	GACNNNGTC	1 cut(s)	248
PsuI	RGATCY	2 cut(s)	161, 320
PsyI	GACNNNGTC	1 cut(s)	248
SaqAI	TTAA	2 cut(s)	132, 291
Sau3AI	GATC	4 cut(s)	18, 161, 177, 320
SetI	ASST	7 cut(s)	105, 117, 142, 264, 276, 301, 333
SfaNI	GCATC	4 cut(s)	43, 98, 202, 257
TaqI	TCGA	1 cut(s)	106
Tru1I	TTAA	2 cut(s)	132, 291
Tru9I	TTAA	2 cut(s)	132, 291
TspDTI	ATGAA	1 cut(s)	345
Tth111I	GACNNNGTC	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.