RchiOBHm_Chr6g0269441

Belongs to the eukaryotic ribosomal protein eL38 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001881
Physical Location & Seq
Reverse (-)
26736316 .. 26738465
2150 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24171

Sequence Viewer

Length: 210 bp
ATGCCGAAGCAAATCCATGAGATCAAGGATTTCCTCCTGACTGCAAGAAGGAAGGATGCCCGTTCTGTGAAAATCAAGAAGACGAAGGACGCAGTCAAGTTCAAGGTTCGATGCTCCAAGTACCTTTACACACTTTGTGTGTTTGATACTGAGAAGGCTGATAAGTTGAAGCAATCCCTTCCTCCAGGTTTGAGCGTTCAGGATCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L38e

Protein Analysis

69

Amino Acids

8.01

Weight (kDa)

9.85

Isoelectric Point (pI)

43.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L38e PF01781 2 - 68 1.6e-35 Ribosomal L38e protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 137
AfaI GTAC 1 cut(s) 122
AgsI TTSAA 2 cut(s) 103, 169
AjnI CCWGG 1 cut(s) 184
AlwNI CAGNNNCTG 1 cut(s) 205
BbsI GAAGAC 1 cut(s) 86
BciT130I CCWGG 1 cut(s) 186
Bme1390I CCNGG 1 cut(s) 186
BmrFI CCNGG 1 cut(s) 186
BmsI GCATC 2 cut(s) 46, 101
BpiI GAAGAC 1 cut(s) 86
BpmI CTGGAG 1 cut(s) 168
BseBI CCWGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 141
Bsp143I GATC 2 cut(s) 21, 202
BspCNI CTCAG 1 cut(s) 142
BssMI GATC 2 cut(s) 21, 202
Bst2UI CCWGG 1 cut(s) 186
BstDEI CTNAG 1 cut(s) 150
BstF5I GGATG 1 cut(s) 61
BstKTI GATC 2 cut(s) 24, 205
BstMBI GATC 2 cut(s) 21, 202
BstNI CCWGG 1 cut(s) 186
BstSCI CCNGG 1 cut(s) 184
BstV2I GAAGAC 1 cut(s) 86
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
BtsCI GGATG 1 cut(s) 61
CaiI CAGNNNCTG 1 cut(s) 205
CseI GACGC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 121
CviAII CATG 1 cut(s) 17
CviJI RGCY 1 cut(s) 158
CviKI_1 RGCY 1 cut(s) 158
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 1 cut(s) 150
DpnI GATC 2 cut(s) 23, 204
DpnII GATC 2 cut(s) 21, 202
DraIII CACNNNGTG 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 184
FaeI CATG 1 cut(s) 20
FaiI YATR 1 cut(s) 18
FatI CATG 1 cut(s) 16
FokI GGATG 1 cut(s) 68
GsuI CTGGAG 1 cut(s) 168
HgaI GACGC 1 cut(s) 98
Hin1II CATG 1 cut(s) 20
Hpy188III TCNNGA 3 cut(s) 37, 76, 200
HpyAV CCTTC 5 cut(s) 42, 46, 79, 148, 188
HpyCH4V TGCA 1 cut(s) 44
HpyF3I CTNAG 1 cut(s) 150
Hsp92II CATG 1 cut(s) 20
Kzo9I GATC 2 cut(s) 21, 202
LmnI GCTCC 1 cut(s) 119
LpnPI CCDG 4 cut(s) 50, 171, 185, 198
LweI GCATC 2 cut(s) 46, 101
MalI GATC 2 cut(s) 23, 204
MboI GATC 2 cut(s) 21, 202
MboII GAAGA 1 cut(s) 91
MflI RGATCY 1 cut(s) 202
MnlI CCTC 2 cut(s) 44, 192
MspR9I CCNGG 1 cut(s) 186
MvaI CCWGG 1 cut(s) 186
NdeII GATC 2 cut(s) 21, 202
NlaIII CATG 1 cut(s) 20
PflFI GACNNNGTC 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 184
PstNI CAGNNNCTG 1 cut(s) 205
PsuI RGATCY 1 cut(s) 202
PsyI GACNNNGTC 1 cut(s) 92
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
Sau3AI GATC 2 cut(s) 21, 202
ScrFI CCNGG 1 cut(s) 186
SetI ASST 3 cut(s) 108, 126, 190
SfaNI GCATC 2 cut(s) 46, 101
StyD4I CCNGG 1 cut(s) 184
TaqI TCGA 1 cut(s) 109
Tth111I GACNNNGTC 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.