MD05G1339000.v1.1

Belongs to the eukaryotic ribosomal protein eL38 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0001881
Physical Location & Seq
Forward (+)
46019454 .. 46019663
210 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1339000.v1.1.491

Sequence Viewer

Length: 210 bp
ATGCCGAAGCAGATCCATGAGATCAAGGATTTCCTTCTAACTGCAAGAAGGAAGGATGCTCGCAATGTCAAAATCAAGAGGACCAAGGATGCTGTCAAGTTCAAGGTTCGGTGCTCCAAGTACCTTTACACACTTTGTGTGTTTGATTCCGAGAAGGCCGACAAGTTGAAGCAATCTCTTCCTCCAGATTTGAACGTTCATGACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L38e

Protein Analysis

70

Amino Acids

8.18

Weight (kDa)

9.78

Isoelectric Point (pI)

43.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L38e PF01781 2 - 68 1.9e-34 Ribosomal L38e protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 195
AclWI GGATC 1 cut(s) 7
AdeI CACNNNGTG 1 cut(s) 137
AfaI GTAC 1 cut(s) 122
AgsI TTSAA 3 cut(s) 103, 169, 193
Alw21I GWGCWC 1 cut(s) 116
AlwI GGATC 1 cut(s) 7
AoxI GGCC 1 cut(s) 156
AspS9I GGNCC 1 cut(s) 81
AvaII GGWCC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 116
Bme18I GGWCC 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 81
BmsI GCATC 2 cut(s) 46, 79
BpmI CTGGAG 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 84
Bse3DI GCAATG 1 cut(s) 70
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 2 cut(s) 61, 94
BseMI GCAATG 1 cut(s) 70
BshFI GGCC 1 cut(s) 158
BsiHKAI GWGCWC 1 cut(s) 116
BsnI GGCC 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 2 cut(s) 12, 21
BspANI GGCC 1 cut(s) 158
BspHI TCATGA 1 cut(s) 199
BspPI GGATC 1 cut(s) 7
BsrDI GCAATG 1 cut(s) 70
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 2 cut(s) 12, 21
BssT1I CCWWGG 1 cut(s) 84
Bst6I CTCTTC 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 61
BstF5I GGATG 2 cut(s) 61, 94
BstKTI GATC 2 cut(s) 15, 24
BstMBI GATC 2 cut(s) 12, 21
BstX2I RGATCY 1 cut(s) 12
BstYI RGATCY 1 cut(s) 12
BsuRI GGCC 1 cut(s) 158
BtsCI GGATG 2 cut(s) 61, 94
Cac8I GCNNGC 1 cut(s) 61
CciI TCATGA 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 81
Csp6I GTAC 1 cut(s) 121
CviAII CATG 2 cut(s) 17, 200
CviJI RGCY 1 cut(s) 158
CviKI_1 RGCY 1 cut(s) 158
CviQI GTAC 1 cut(s) 121
DpnI GATC 2 cut(s) 14, 23
DpnII GATC 2 cut(s) 12, 21
DraIII CACNNNGTG 1 cut(s) 137
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 2 cut(s) 20, 203
FaiI YATR 2 cut(s) 18, 201
FatI CATG 2 cut(s) 16, 199
FokI GGATG 2 cut(s) 68, 101
GsuI CTGGAG 1 cut(s) 168
HaeIII GGCC 1 cut(s) 158
Hin1II CATG 2 cut(s) 20, 203
HinfI GANTC 1 cut(s) 146
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 3 cut(s) 76, 185, 200
HpyAV CCTTC 4 cut(s) 42, 44, 46, 148
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 1 cut(s) 44
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 2 cut(s) 20, 203
Kzo9I GATC 2 cut(s) 12, 21
LmnI GCTCC 1 cut(s) 119
LpnPI CCDG 1 cut(s) 198
LweI GCATC 2 cut(s) 46, 79
MaeII ACGT 1 cut(s) 195
MalI GATC 2 cut(s) 14, 23
MboI GATC 2 cut(s) 12, 21
MboII GAAGA 1 cut(s) 170
MflI RGATCY 1 cut(s) 12
MhlI GDGCHC 1 cut(s) 116
MnlI CCTC 2 cut(s) 72, 192
NdeII GATC 2 cut(s) 12, 21
NlaIII CATG 2 cut(s) 20, 203
PagI TCATGA 1 cut(s) 199
PfeI GAWTC 1 cut(s) 146
Psp1406I AACGTT 1 cut(s) 195
PspPI GGNCC 1 cut(s) 81
PsuI RGATCY 1 cut(s) 12
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
Sau3AI GATC 2 cut(s) 12, 21
Sau96I GGNCC 1 cut(s) 81
SduI GDGCHC 1 cut(s) 116
SetI ASST 3 cut(s) 108, 126, 198
SfaNI GCATC 2 cut(s) 46, 79
SinI GGWCC 1 cut(s) 81
StyI CCWWGG 1 cut(s) 84
TaiI ACGT 1 cut(s) 198
TfiI GAWTC 1 cut(s) 146
TspDTI ATGAA 1 cut(s) 188
VpaK11BI GGWCC 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.