Prupe.1G193400_v2.0.a1

Belongs to the eukaryotic ribosomal protein eL38 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
18143261 .. 18145681
2421 bp
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UTR
Exon/CDS
Intron
Prupe.1G193400.1

Sequence Viewer

Length: 210 bp
ATGCCTAAGCAAATCCATGAGATTAAAGATTTCCTTCTCACTGCAAGAAGGAAAGATGCACGCTCGGTGAAAATCAAGAGAAGCAAAGATGCGGTCAAGTTCAAGGTTCGTTGCTCCAAGTACCTGTACACACTTTGTGTGTTTGACTCAGAGAAGGCTGACAAGTTGAAGCAGTCTCTTCCTCCAGGTTTGAGTGTGCAAGACCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

70

Amino Acids

8.01

Weight (kDa)

9.9

Isoelectric Point (pI)

59.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 92
AdeI CACNNNGTG 1 cut(s) 137
AfaI GTAC 2 cut(s) 122, 128
AgsI TTSAA 2 cut(s) 103, 169
AjnI CCWGG 1 cut(s) 184
Alw26I GTCTC 1 cut(s) 180
ArsI GACNNNNNNTTYG 2 cut(s) 78, 110
AsuHPI GGTGA 1 cut(s) 79
BciT130I CCWGG 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 180
Bme1390I CCNGG 1 cut(s) 186
BmrFI CCNGG 1 cut(s) 186
BmsI GCATC 2 cut(s) 46, 79
BpmI CTGGAG 1 cut(s) 168
Bpu10I CCTNAGC 1 cut(s) 6
BseBI CCWGG 1 cut(s) 186
BseMII CTCAG 1 cut(s) 162
BsmAI GTCTC 1 cut(s) 180
Bsp1407I TGTACA 1 cut(s) 126
BspACI CCGC 1 cut(s) 92
BspCNI CTCAG 1 cut(s) 161
BsrGI TGTACA 1 cut(s) 126
Bst2UI CCWGG 1 cut(s) 186
Bst6I CTCTTC 1 cut(s) 183
BstAUI TGTACA 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 2 cut(s) 6, 148
BstMAI GTCTC 1 cut(s) 180
BstNI CCWGG 1 cut(s) 186
BstSCI CCNGG 1 cut(s) 184
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 61
Csp6I GTAC 2 cut(s) 121, 127
CviAII CATG 1 cut(s) 17
CviJI RGCY 1 cut(s) 158
CviKI_1 RGCY 1 cut(s) 158
CviQI GTAC 2 cut(s) 121, 127
DdeI CTNAG 2 cut(s) 6, 148
DraIII CACNNNGTG 1 cut(s) 137
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 184
FaeI CATG 1 cut(s) 20
FaiI YATR 1 cut(s) 18
FalI AAGNNNNNCTT 2 cut(s) 18, 50
FatI CATG 1 cut(s) 16
GsuI CTGGAG 1 cut(s) 168
Hin1II CATG 1 cut(s) 20
HinfI GANTC 1 cut(s) 146
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 1 cut(s) 129
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 1 cut(s) 76
Hpy8I GTNNAC 1 cut(s) 129
HpyAV CCTTC 3 cut(s) 42, 44, 148
HpyCH4V TGCA 3 cut(s) 44, 59, 199
HpyF3I CTNAG 2 cut(s) 6, 148
Hsp92II CATG 1 cut(s) 20
LmnI GCTCC 1 cut(s) 119
LpnPI CCDG 3 cut(s) 137, 171, 198
LweI GCATC 2 cut(s) 46, 79
MboII GAAGA 1 cut(s) 170
MlyI GAGTC 1 cut(s) 140
MnlI CCTC 1 cut(s) 192
MseI TTAA 1 cut(s) 24
MspR9I CCNGG 1 cut(s) 186
MvaI CCWGG 1 cut(s) 186
NlaIII CATG 1 cut(s) 20
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
Psp6I CCWGG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 184
RsaI GTAC 2 cut(s) 122, 128
RsaNI GTAC 2 cut(s) 121, 127
SaqAI TTAA 1 cut(s) 24
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 1 cut(s) 186
SetI ASST 4 cut(s) 108, 126, 190, 207
SfaNI GCATC 2 cut(s) 46, 79
SsiI CCGC 1 cut(s) 92
StyD4I CCNGG 1 cut(s) 184
TatI WGTACW 1 cut(s) 126
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TscAI CASTG 1 cut(s) 46
TspRI CASTG 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.