Rorug02G0602700

Belongs to the eukaryotic ribosomal protein eL38 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001881
Physical Location & Seq
Forward (+)
72162063 .. 72164960
2898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0602700.1

Sequence Viewer

Length: 948 bp
ATGGATTCTATCTCTTCCTGCTCTCCTGTTATCCCCAAAGACATGGCCAAGAAGAAGAGGACGAACCGGTTAGCGAAATTGAAGCAGAGCAAGCTCGATGTTCGCCGTGAGCAGTGGCTTTCACATGTCAAAAATAAAGGGCCCAAGGTGAATGCTGATCGGAGTGATGGATCTCCTACATCATTTATTCACGTACATAATGAGCGAAAAATATTATTGGACAATCTGGAAACAAGTTCAACAGGAGGGTCAATTGATAATTCAAGCATCCATGACAGTGATGTGGAGTCTCTGCTGAACAGCCCTTATGGAAGCAGTTTGGATCGAAGTGATTCAGTAAAGAATCTTAATGAGAGCAGCAACAGTGGGTGCTCGGAAAATGTCAGCAAGGAGGACGCAGACGATGGGTGTCTGGATGACTGGGAGGCTGTGGCAGATGCTTTGACTGCAGATGACAATCAACATAACCATCTGTTTGGTTTTCCTGCCACAACTGAAGTGAGGGTTGAACCCACGGGTCCAGAACTCTGTATTAAGAATACTGGAGCAGAGTTATCAAAACCAGAGAACGGAAACCTAGGTCCCGAGTCACGAGTGAACACTTGTGCTTGGAGACCTGACGATGCTTCCCGTCCTCAGAGTCTGCCAAACTTGTCAAAGGAGCATAGTTTCCCAGTGCAGTCAGACTGGCATTGTGGTCATGGAACCATTGCCTGGACATGGCAAAGCATTGTTCCCCAGCCTTCGTCATGTCCTATATGCTATGAGGATTTAGATATCACAGACTCAAGCTTTCTTCCATGTTCATGTGGTTTCCGGCTATGCCTCTTTTGTCACAAAAGGATTTTAGAGGCAGATGGGAGATGTCCAGGCTGCAGGAAGCAGTATGATCGTGTAAATGAGGTTATGAGCTTTAATGGAGGAGCTACAACTTTTAGAGTAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L38e

Protein Analysis

315

Amino Acids

34.68

Weight (kDa)

5.49

Isoelectric Point (pI)

56.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_4 PF14570 251 - 297 1.4e-18 RING/Ubox like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 714
AclWI GGATC 2 cut(s) 178, 330
AcoI YGGCCR 1 cut(s) 45
AcuI CTGAAG 1 cut(s) 516
AfaI GTAC 1 cut(s) 195
AfiI CCNNNNNNNGG 3 cut(s) 569, 714, 720
AflIII ACRYGT 1 cut(s) 124
AgeI ACCGGT 1 cut(s) 66
AgsI TTSAA 4 cut(s) 82, 240, 264, 509
AjnI CCWGG 2 cut(s) 713, 868
AluBI AGCT 5 cut(s) 94, 792, 912, 926, 944
AluI AGCT 5 cut(s) 94, 792, 912, 926, 944
Alw21I GWGCWC 1 cut(s) 374
Alw26I GTCTC 2 cut(s) 294, 607
AlwI GGATC 2 cut(s) 178, 330
AlwNI CAGNNNCTG 1 cut(s) 643
Ama87I CYCGRG 1 cut(s) 584
AoxI GGCC 2 cut(s) 45, 140
ApaI GGGCCC 1 cut(s) 144
ApeKI GCWGC 2 cut(s) 357, 873
AsiGI ACCGGT 1 cut(s) 66
Asp700I GAANNNNTTC 1 cut(s) 331
AspA2I CCTAGG 1 cut(s) 577
AspS9I GGNCC 4 cut(s) 140, 141, 518, 581
AsuHPI GGTGA 1 cut(s) 160
AvaI CYCGRG 1 cut(s) 584
AvaII GGWCC 2 cut(s) 518, 581
AvrII CCTAGG 1 cut(s) 577
BaeGI GKGCMC 1 cut(s) 144
BalI TGGCCA 1 cut(s) 47
BanII GRGCYC 1 cut(s) 144
BauI CACGAG 1 cut(s) 591
Bbv12I GWGCWC 1 cut(s) 374
BbvI GCAGC 2 cut(s) 369, 860
BccI CCATC 4 cut(s) 161, 398, 477, 851
BceAI ACGGC 1 cut(s) 90
BcgI CGANNNNNNTGC 2 cut(s) 872, 906
BciT130I CCWGG 2 cut(s) 715, 870
BcoDI GTCTC 2 cut(s) 294, 607
BfaI CTAG 1 cut(s) 578
BfmI CTRYAG 2 cut(s) 447, 874
BisI GCNGC 2 cut(s) 358, 874
BlnI CCTAGG 1 cut(s) 577
BlsI GCNGC 2 cut(s) 359, 875
Bme1390I CCNGG 2 cut(s) 715, 870
Bme18I GGWCC 2 cut(s) 518, 581
BmeT110I CYCGRG 1 cut(s) 584
BmgT120I GGNCC 4 cut(s) 140, 141, 518, 581
BmiI GGNNCC 4 cut(s) 142, 519, 583, 706
BmrFI CCNGG 2 cut(s) 715, 870
BmrI ACTGGG 2 cut(s) 430, 668
BmsI GCATC 3 cut(s) 276, 427, 613
BmuI ACTGGG 2 cut(s) 430, 668
BpmI CTGGAG 1 cut(s) 564
BpuEI CTTGAG 1 cut(s) 772
BsaAI YACGTR 1 cut(s) 193
BsaBI GATNNNNATC 1 cut(s) 456
BsaI GGTCTC 1 cut(s) 607
BsaJI CCNNGG 3 cut(s) 144, 513, 577
BsaWI WCCGGW 1 cut(s) 66
Bsc4I CCNNNNNNNGG 3 cut(s) 569, 714, 720
Bse118I RCCGGY 1 cut(s) 66
Bse1I ACTGG 4 cut(s) 425, 547, 674, 692
Bse3DI GCAATG 1 cut(s) 708
Bse8I GATNNNNATC 1 cut(s) 456
BseBI CCWGG 2 cut(s) 715, 870
BseDI CCNNGG 3 cut(s) 144, 513, 577
BseGI GGATG 2 cut(s) 267, 421
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 3 cut(s) 569, 714, 720
BseMI GCAATG 1 cut(s) 708
BseMII CTCAG 1 cut(s) 650
BseNI ACTGG 4 cut(s) 425, 547, 674, 692
BseRI GAGGAG 1 cut(s) 936
BseSI GKGCMC 1 cut(s) 144
BseXI GCAGC 2 cut(s) 369, 860
BseYI CCCAGC 1 cut(s) 738
BsgI GTGCAG 1 cut(s) 698
BshFI GGCC 2 cut(s) 47, 142
BshTI ACCGGT 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 374
BsiHKCI CYCGRG 1 cut(s) 584
BsiSI CCGG 2 cut(s) 67, 817
BslFI GGGAC 1 cut(s) 567
BslI CCNNNNNNNGG 3 cut(s) 569, 714, 720
BsmAI GTCTC 2 cut(s) 294, 607
BsmFI GGGAC 1 cut(s) 567
BsmI GAATGC 1 cut(s) 157
BsnI GGCC 2 cut(s) 47, 142
Bso31I GGTCTC 1 cut(s) 607
BsoBI CYCGRG 1 cut(s) 584
Bsp120I GGGCCC 1 cut(s) 140
Bsp1286I GDGCHC 2 cut(s) 144, 374
Bsp143I GATC 4 cut(s) 157, 170, 322, 889
BspANI GGCC 2 cut(s) 47, 142
BspCNI CTCAG 1 cut(s) 649
BspLI GGNNCC 4 cut(s) 142, 519, 583, 706
BspMAI CTGCAG 2 cut(s) 451, 878
BspPI GGATC 2 cut(s) 178, 330
BspTNI GGTCTC 1 cut(s) 607
BsrDI GCAATG 1 cut(s) 708
BsrFI RCCGGY 1 cut(s) 66
BsrI ACTGG 4 cut(s) 425, 547, 674, 692
BssAI RCCGGY 1 cut(s) 66
BssECI CCNNGG 3 cut(s) 144, 513, 577
BssMI GATC 4 cut(s) 157, 170, 322, 889
BssSI CACGAG 1 cut(s) 591
BssT1I CCWWGG 2 cut(s) 144, 577
Bst2BI CACGAG 1 cut(s) 591
Bst2UI CCWGG 2 cut(s) 715, 870
Bst4CI ACNGT 2 cut(s) 278, 365
Bst6I CTCTTC 2 cut(s) 19, 50
BstBAI YACGTR 1 cut(s) 193
BstC8I GCNNGC 1 cut(s) 92
BstDEI CTNAG 1 cut(s) 636
BstDSI CCRYGG 1 cut(s) 513
BstF5I GGATG 2 cut(s) 267, 421
BstKTI GATC 4 cut(s) 160, 173, 325, 892
BstMAI GTCTC 2 cut(s) 294, 607
BstMBI GATC 4 cut(s) 157, 170, 322, 889
BstMWI GCNNNNNNNGC 2 cut(s) 91, 446
BstNI CCWGG 2 cut(s) 715, 870
BstNSI RCATGY 1 cut(s) 128
BstSCI CCNGG 2 cut(s) 713, 868
BstSFI CTRYAG 2 cut(s) 447, 874
BstSLI GKGCMC 1 cut(s) 144
BstV1I GCAGC 2 cut(s) 369, 860
BstX2I RGATCY 1 cut(s) 170
BstXI CCANNNNNNTGG 2 cut(s) 43, 476
BstYI RGATCY 1 cut(s) 170
BsuRI GGCC 2 cut(s) 47, 142
BtgI CCRYGG 1 cut(s) 513
BtsCI GGATG 2 cut(s) 267, 421
BtsI GCAGTG 1 cut(s) 119
BtsIMutI CAGTG 4 cut(s) 119, 283, 370, 681
Cac8I GCNNGC 1 cut(s) 92
CaiI CAGNNNCTG 1 cut(s) 643
Cfr10I RCCGGY 1 cut(s) 66
Cfr13I GGNCC 4 cut(s) 140, 141, 518, 581
CseI GACGC 1 cut(s) 404
Csp6I GTAC 1 cut(s) 194
CspAI ACCGGT 1 cut(s) 66
CviAII CATG 8 cut(s) 43, 125, 272, 701, 720, 750, 801, 807
CviQI GTAC 1 cut(s) 194
DdeI CTNAG 1 cut(s) 636
DpnI GATC 4 cut(s) 159, 172, 324, 891
DpnII GATC 4 cut(s) 157, 170, 322, 889
EaeI YGGCCR 1 cut(s) 45
Eam1104I CTCTTC 2 cut(s) 19, 50
EarI CTCTTC 2 cut(s) 19, 50
Eco130I CCWWGG 2 cut(s) 144, 577
Eco24I GRGCYC 1 cut(s) 144
Eco31I GGTCTC 1 cut(s) 607
Eco32I GATATC 1 cut(s) 778
Eco47I GGWCC 2 cut(s) 518, 581
Eco57I CTGAAG 1 cut(s) 516
Eco88I CYCGRG 1 cut(s) 584
EcoO109I RGGNCCY 2 cut(s) 140, 581
EcoRII CCWGG 2 cut(s) 713, 868
EcoRV GATATC 1 cut(s) 778
EcoT14I CCWWGG 2 cut(s) 144, 577
EcoT38I GRGCYC 1 cut(s) 144
ErhI CCWWGG 2 cut(s) 144, 577
FaeI CATG 8 cut(s) 46, 128, 275, 704, 723, 753, 804, 810
FaqI GGGAC 1 cut(s) 567
FatI CATG 8 cut(s) 42, 124, 271, 700, 719, 749, 800, 806
Fnu4HI GCNGC 2 cut(s) 358, 874
FokI GGATG 2 cut(s) 254, 428
FriOI GRGCYC 1 cut(s) 144
Fsp4HI GCNGC 2 cut(s) 358, 874
FspBI CTAG 1 cut(s) 578
GluI GCNGC 2 cut(s) 358, 874
GsaI CCCAGC 1 cut(s) 742
GsuI CTGGAG 1 cut(s) 564
HaeIII GGCC 2 cut(s) 47, 142
HapII CCGG 2 cut(s) 67, 817
HgaI GACGC 1 cut(s) 404
Hin1II CATG 8 cut(s) 46, 128, 275, 704, 723, 753, 804, 810
HindIII AAGCTT 1 cut(s) 790
HinfI GANTC 7 cut(s) 5, 287, 332, 343, 587, 640, 785
HpaII CCGG 2 cut(s) 67, 817
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 1 cut(s) 598
Hpy188I TCNGA 4 cut(s) 162, 376, 639, 685
Hpy188III TCNNGA 5 cut(s) 227, 413, 521, 584, 591
Hpy8I GTNNAC 1 cut(s) 598
HpyAV CCTTC 1 cut(s) 753
HpyCH4III ACNGT 2 cut(s) 278, 365
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 3 cut(s) 449, 679, 876
HpyF10VI GCNNNNNNNGC 2 cut(s) 91, 446
HpyF3I CTNAG 1 cut(s) 636
HpySE526I ACGT 1 cut(s) 192
Hsp92II CATG 8 cut(s) 46, 128, 275, 704, 723, 753, 804, 810
Kzo9I GATC 4 cut(s) 157, 170, 322, 889
LmnI GCTCC 3 cut(s) 545, 661, 923
Lsp1109I GCAGC 2 cut(s) 369, 860
LweI GCATC 3 cut(s) 276, 427, 613
MaeI CTAG 1 cut(s) 578
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 2 cut(s) 588, 833
MalI GATC 4 cut(s) 159, 172, 324, 891
MboI GATC 4 cut(s) 157, 170, 322, 889
MboII GAAGA 4 cut(s) 6, 64, 67, 788
MfeI CAATTG 1 cut(s) 252
MflI RGATCY 1 cut(s) 170
MhlI GDGCHC 2 cut(s) 144, 374
MlsI TGGCCA 1 cut(s) 47
MluCI AATT 3 cut(s) 77, 252, 259
MluNI TGGCCA 1 cut(s) 47
MlyI GAGTC 4 cut(s) 296, 596, 649, 779
Mox20I TGGCCA 1 cut(s) 47
MroXI GAANNNNTTC 1 cut(s) 331
MscI TGGCCA 1 cut(s) 47
MseI TTAA 3 cut(s) 348, 534, 915
MslI CAYNNNNRTG 2 cut(s) 276, 805
Msp20I TGGCCA 1 cut(s) 47
MspI CCGG 2 cut(s) 67, 817
MspR9I CCNGG 2 cut(s) 715, 870
MunI CAATTG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 157
MvaI CCWGG 2 cut(s) 715, 870
MwoI GCNNNNNNNGC 2 cut(s) 91, 446
NdeII GATC 4 cut(s) 157, 170, 322, 889
NlaIII CATG 8 cut(s) 46, 128, 275, 704, 723, 753, 804, 810
NlaIV GGNNCC 4 cut(s) 142, 519, 583, 706
NmuCI GTSAC 2 cut(s) 588, 833
NspI RCATGY 1 cut(s) 128
PciI ACATGT 1 cut(s) 124
PctI GAATGC 1 cut(s) 157
PdmI GAANNNNTTC 1 cut(s) 331
PfeI GAWTC 3 cut(s) 5, 332, 343
PflMI CCANNNNNTGG 1 cut(s) 714
PinAI ACCGGT 1 cut(s) 66
PkrI GCNGC 2 cut(s) 359, 875
PleI GAGTC 4 cut(s) 295, 595, 648, 779
PpsI GAGTC 4 cut(s) 295, 595, 648, 779
Ppu21I YACGTR 1 cut(s) 193
PpuMI RGGWCCY 1 cut(s) 581
PscI ACATGT 1 cut(s) 124
Psp5II RGGWCCY 1 cut(s) 581
Psp6I CCWGG 2 cut(s) 713, 868
PspFI CCCAGC 1 cut(s) 738
PspGI CCWGG 2 cut(s) 713, 868
PspN4I GGNNCC 4 cut(s) 142, 519, 583, 706
PspOMI GGGCCC 1 cut(s) 140
PspPI GGNCC 4 cut(s) 140, 141, 518, 581
PspPPI RGGWCCY 1 cut(s) 581
PstI CTGCAG 2 cut(s) 451, 878
PstNI CAGNNNCTG 1 cut(s) 643
PsuI RGATCY 1 cut(s) 170
RsaI GTAC 1 cut(s) 195
RsaNI GTAC 1 cut(s) 194
RseI CAYNNNNRTG 2 cut(s) 276, 805
SaqAI TTAA 3 cut(s) 348, 534, 915
SatI GCNGC 2 cut(s) 358, 874
Sau3AI GATC 4 cut(s) 157, 170, 322, 889
Sau96I GGNCC 4 cut(s) 140, 141, 518, 581
SchI GAGTC 4 cut(s) 296, 596, 649, 779
ScrFI CCNGG 2 cut(s) 715, 870
SduI GDGCHC 2 cut(s) 144, 374
SfaNI GCATC 3 cut(s) 276, 427, 613
SfcI CTRYAG 2 cut(s) 447, 874
SinI GGWCC 2 cut(s) 518, 581
SmiMI CAYNNNNRTG 2 cut(s) 276, 805
SmlI CTYRAG 1 cut(s) 787
SmoI CTYRAG 1 cut(s) 787
Sse9I AATT 3 cut(s) 77, 252, 259
SspI AATATT 1 cut(s) 213
SspMI CTAG 1 cut(s) 578
StyD4I CCNGG 2 cut(s) 713, 868
StyI CCWWGG 2 cut(s) 144, 577
TaaI ACNGT 2 cut(s) 278, 365
TaiI ACGT 1 cut(s) 195
TaqI TCGA 2 cut(s) 96, 325
TasI AATT 3 cut(s) 77, 252, 259
TfiI GAWTC 3 cut(s) 5, 332, 343
Tru1I TTAA 3 cut(s) 348, 534, 915
Tru9I TTAA 3 cut(s) 348, 534, 915
TscAI CASTG 4 cut(s) 119, 283, 370, 681
TseFI GTSAC 2 cut(s) 588, 833
TseI GCWGC 2 cut(s) 357, 873
Tsp45I GTSAC 2 cut(s) 588, 833
TspDTI ATGAA 1 cut(s) 795
TspGWI ACGGA 1 cut(s) 585
TspRI CASTG 4 cut(s) 119, 283, 370, 681
Van91I CCANNNNNTGG 1 cut(s) 714
VpaK11BI GGWCC 2 cut(s) 518, 581
XceI RCATGY 1 cut(s) 128
XmaJI CCTAGG 1 cut(s) 577
XmnI GAANNNNTTC 1 cut(s) 331
XspI CTAG 1 cut(s) 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.