Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001881

Physical Location & Seq

Genomic Coordinates Forward (+)

72165752 .. 72167633

Gene Structure 1882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0602800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGTTTCAAAGAACCATCTTCTTGGTTCTCTTCTTCTTGCTCGCTTCTTTGATCACCATTCCCACACATACACATGCAATCCGATCATTCCCGGAAAGAGTAGGGGTTTCCATCTCGCACCAATTCTCGGAGGCTCCCGAGTACGCCAATGGATTCAGCTGCCCTGTTTTGGGTGGAGACAGCTTTCCAAAGACGTGTGATCCCTCTCTTGTTCATATTGCAATGACTATTGATTCCGAGTACTTGAGAGGCACGATAGCTGCAGTCCACTCTGTTCTCAAGCACGCTTCTTGCCCTGAAAACATCTTCTTCCACTTCATCGCCTCGGATTCCAGTCCGCTCAGTTCCGAAGACCTTACTCGAGTTGTCCACTCCACGTTTCCGTCTCTCAGTTTCAGAGTTTATCAGTTCAAGGAGAGCCTAGTCAGTCATCTGATTTCATCTTCCATTCGTCAAGCTCTTGATAACCCCTTGAACTACGCAAGAAGCTACTTAGCCGATTTGCTAGACTCTTGCGTGAAGCGTGTGATCTATTTAGACTCTGATGTTATAGTTGTTGATGATATAGCCAAGCTGTGGAGGATAACTTTATCAGGGTCCAGAGTTATTGGTGCTCCGGAGTATTGTCACGCAAATTTCACCAAGTACTTTTCGAATGGATTTTGGGCCGATACGGAAATGTCTAGAGTTTTTGAAGGGAGAAGTGCTTGTTATTTCAATACAGGTGTGATGGTGATGGACTTGGTGAGATGGAGAGAGGGTGATTATACGCGGAAGATTGAGAGTTGGATGGAGATTCAGAAGGAGAAGAGGATTTACGAGCTGGGTTCTCTACCGCCTTTTTTGTTGGTCTTCGGTGGAGATGTAGAGGCTATTCACCACAGATGGAACCAACATGGGCTTGGTGGTGATAATGTGGTGAATAGTTGCAGGTCTTTGCATCCAGGTCCTGTGAGCTTGTTGCATTGGAGTGGGAAAGGGAAGCCATGGTCAAGGCTTGATTTGGGAGAGGCTTGCCTGGTTGATTTTCTATGGGCGCCTTATGATCTCTACAGACACCATGATCATCATCTTCACCACCACCATCATCAACACAATCTACAGCTATTGGACGTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L38e

Protein Analysis

373

Amino Acids

42.48

Weight (kDa)

6.4

Isoelectric Point (pI)

51.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	72 - 332	8.7e-55	Glycosyl transferase family 8
Glyco_transf_24	PF18404	102 - 255	6.2e-06	Glucosyltransferase 24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43460 AT3G59540
fragaria_vesca	FvH4_2g11140 FvH4_2g12030 FvH4_3g31637 FvH4_6g00180 FvH4_6g00180
malus_domestica	MD03G1210200.v1.1 MD04G1045900.v1.1 MD04G1247500.v1.1 MD05G1254000.v1.1 MD05G1339000.v1.1 MD11G1200200.v1.1 MD12G1262900.v1.1 MD13G1258200.v1.1 MD15G1353900.v1.1
prunus_persica	Prupe.1G193400_v2.0.a1 Prupe.1G198900_v2.0.a1 Prupe.6G363900_v2.0.a1 Prupe.7G035900_v2.0.a1
pyrus_communis	pycom04g21820 pycom12g24090
rosa_chinensis	RchiOBHm_Chr3g0447551 RchiOBHm_Chr6g0269441
rosa_laevigata	RLG00000025704
rosa_multiflora	Rmu_co8253789.1_g000001 Rmu_sc0000743.1_g000005 Rmu_sc0003550.1_g000008 Rmu_sc0027627.1_g000001 Rmu_sc0037294.1_g000003
rosa_roxburghii	Rroxscaffold_7G00198720
rosa_rugosa	Rorug02G0602700 Rorug02G0602800 Rorug05G0286200 Rorug05G0286200 Rorug06G0047800
rosa_samantha	Rh2CG566400 Rh3CG339700 Rh5CG368600 Rh5DG420000 Rh6CG167700 Rh6DG159700
rosa_wichuraiana	Rw2G024710 Rw3G000200 Rw5G036920 Rw6G014480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	921
AccB1I	GGYRCC	1 cut(s)	1036
AccB7I	CCANNNNNTGG	1 cut(s)	576
AccBSI	CCGCTC	1 cut(s)	340
AccII	CGCG	1 cut(s)	772
AccIII	TCCGGA	1 cut(s)	616
AciI	CCGC	3 cut(s)	338, 772, 836
AclWI	GGATC	1 cut(s)	194
AcsI	RAATTY	1 cut(s)	634
AcyI	GRCGYC	1 cut(s)	1037
AfaI	GTAC	3 cut(s)	143, 242, 647
AfiI	CCNNNNNNNGG	4 cut(s)	127, 169, 170, 576
AflIII	ACRYGT	1 cut(s)	194
AgsI	TTSAA	5 cut(s)	8, 412, 475, 695, 718
AjiI	CACGTC	1 cut(s)	195
AjnI	CCWGG	2 cut(s)	943, 1017
AluBI	AGCT	9 cut(s)	159, 183, 260, 458, 489, 574, 823, 957, 1105
AluI	AGCT	9 cut(s)	159, 183, 260, 458, 489, 574, 823, 957, 1105
Alw21I	GWGCWC	1 cut(s)	616
Alw26I	GTCTC	2 cut(s)	171, 390
AlwI	GGATC	1 cut(s)	194
AlwNI	CAGNNNCTG	1 cut(s)	950
Ama87I	CYCGRG	2 cut(s)	137, 360
Aor13HI	TCCGGA	1 cut(s)	616
AoxI	GGCC	1 cut(s)	666
ApeKI	GCWGC	2 cut(s)	159, 260
ApoI	RAATTY	1 cut(s)	634
AspLEI	GCGC	1 cut(s)	1039
AspS9I	GGNCC	3 cut(s)	597, 666, 947
AsuC2I	CCSGG	1 cut(s)	92
AsuHPI	GGTGA	9 cut(s)	46, 631, 745, 757, 773, 869, 920, 931, 1067
AsuII	TTCGAA	1 cut(s)	653
AvaI	CYCGRG	2 cut(s)	137, 360
AvaII	GGWCC	2 cut(s)	597, 947
BanI	GGYRCC	1 cut(s)	1036
BarI	GAAGNNNNNNTAC	2 cut(s)	800, 832
BbsI	GAAGAC	2 cut(s)	357, 844
Bbv12I	GWGCWC	1 cut(s)	616
BbvI	GCAGC	2 cut(s)	146, 247
BccI	CCATC	8 cut(s)	23, 119, 724, 730, 744, 784, 879, 1092
BciT130I	CCWGG	2 cut(s)	945, 1019
BclI	TGATCA	2 cut(s)	51, 1063
BcnI	CCSGG	1 cut(s)	92
BcoDI	GTCTC	2 cut(s)	171, 390
BfaI	CTAG	3 cut(s)	422, 506, 684
BfmI	CTRYAG	3 cut(s)	261, 1051, 1100
BfoI	RGCGCY	1 cut(s)	1040
BfuAI	ACCTGC	1 cut(s)	921
BisI	GCNGC	2 cut(s)	160, 261
BlsI	GCNGC	2 cut(s)	161, 262
BmcAI	AGTACT	2 cut(s)	242, 647
Bme1390I	CCNGG	3 cut(s)	92, 945, 1019
Bme18I	GGWCC	2 cut(s)	597, 947
BmeT110I	CYCGRG	2 cut(s)	137, 360
BmgBI	CACGTC	1 cut(s)	195
BmgT120I	GGNCC	3 cut(s)	597, 666, 947
BmiI	GGNNCC	4 cut(s)	135, 598, 890, 1038
BmrFI	CCNGG	3 cut(s)	92, 945, 1019
BmsI	GCATC	1 cut(s)	949
BpiI	GAAGAC	2 cut(s)	357, 844
Bpu14I	TTCGAA	1 cut(s)	653
BpuEI	CTTGAG	2 cut(s)	263, 265
BpuMI	CCSGG	1 cut(s)	92
BsaBI	GATNNNNATC	1 cut(s)	1068
BsaHI	GRCGYC	1 cut(s)	1037
BsaJI	CCNNGG	2 cut(s)	324, 986
BsaWI	WCCGGW	1 cut(s)	616
BsaXI	ACNNNNNCTCC	2 cut(s)	745, 775
Bsc4I	CCNNNNNNNGG	4 cut(s)	127, 169, 170, 576
Bse1I	ACTGG	1 cut(s)	333
Bse3DI	GCAATG	1 cut(s)	228
Bse8I	GATNNNNATC	1 cut(s)	1068
BseAI	TCCGGA	1 cut(s)	616
BseBI	CCWGG	2 cut(s)	945, 1019
BseDI	CCNNGG	2 cut(s)	324, 986
BseGI	GGATG	2 cut(s)	795, 940
BseJI	GATNNNNATC	1 cut(s)	1068
BseLI	CCNNNNNNNGG	4 cut(s)	127, 169, 170, 576
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	2 cut(s)	355, 403
BseNI	ACTGG	1 cut(s)	333
BseXI	GCAGC	2 cut(s)	146, 247
BseYI	CCCAGC	1 cut(s)	823
Bsh1236I	CGCG	1 cut(s)	772
BshFI	GGCC	1 cut(s)	668
BshNI	GGYRCC	1 cut(s)	1036
BsiHKAI	GWGCWC	1 cut(s)	616
BsiHKCI	CYCGRG	2 cut(s)	137, 360
BsiSI	CCGG	2 cut(s)	92, 617
BslI	CCNNNNNNNGG	4 cut(s)	127, 169, 170, 576
BsmAI	GTCTC	2 cut(s)	171, 390
BsmBI	CGTCTC	1 cut(s)	390
BsnI	GGCC	1 cut(s)	668
BsoBI	CYCGRG	2 cut(s)	137, 360
Bsp119I	TTCGAA	1 cut(s)	653
Bsp1286I	GDGCHC	1 cut(s)	616
Bsp13I	TCCGGA	1 cut(s)	616
Bsp143I	GATC	6 cut(s)	51, 83, 199, 528, 1045, 1063
Bsp19I	CCATGG	1 cut(s)	986
BspACI	CCGC	3 cut(s)	338, 772, 836
BspANI	GGCC	1 cut(s)	668
BspCNI	CTCAG	2 cut(s)	354, 402
BspEI	TCCGGA	1 cut(s)	616
BspFNI	CGCG	1 cut(s)	772
BspLI	GGNNCC	4 cut(s)	135, 598, 890, 1038
BspMAI	CTGCAG	1 cut(s)	265
BspMI	ACCTGC	1 cut(s)	921
BspPI	GGATC	1 cut(s)	194
BspT104I	TTCGAA	1 cut(s)	653
BspT107I	GGYRCC	1 cut(s)	1036
BsrBI	CCGCTC	1 cut(s)	340
BsrDI	GCAATG	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	333
BssECI	CCNNGG	2 cut(s)	324, 986
BssMI	GATC	6 cut(s)	51, 83, 199, 528, 1045, 1063
BssNI	GRCGYC	1 cut(s)	1037
BssT1I	CCWWGG	1 cut(s)	986
Bst2UI	CCWGG	2 cut(s)	945, 1019
Bst6I	CTCTTC	2 cut(s)	35, 803
BstACI	GRCGYC	1 cut(s)	1037
BstBI	TTCGAA	1 cut(s)	653
BstC8I	GCNNGC	3 cut(s)	42, 285, 1015
BstDEI	CTNAG	3 cut(s)	341, 389, 493
BstDSI	CCRYGG	1 cut(s)	986
BstF5I	GGATG	2 cut(s)	795, 940
BstFNI	CGCG	1 cut(s)	772
BstH2I	RGCGCY	1 cut(s)	1040
BstHHI	GCGC	1 cut(s)	1039
BstKTI	GATC	6 cut(s)	54, 86, 202, 531, 1048, 1066
BstMAI	GTCTC	2 cut(s)	171, 390
BstMBI	GATC	6 cut(s)	51, 83, 199, 528, 1045, 1063
BstNI	CCWGG	2 cut(s)	945, 1019
BstNSI	RCATGY	1 cut(s)	77
BstSCI	CCNGG	3 cut(s)	90, 943, 1017
BstSFI	CTRYAG	3 cut(s)	261, 1051, 1100
BstUI	CGCG	1 cut(s)	772
BstV1I	GCAGC	2 cut(s)	146, 247
BstV2I	GAAGAC	2 cut(s)	357, 844
BstXI	CCANNNNNNTGG	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	668
BtgI	CCRYGG	1 cut(s)	986
BtgZI	GCGATG	1 cut(s)	304
BtrI	CACGTC	1 cut(s)	195
BtsCI	GGATG	2 cut(s)	795, 940
BveI	ACCTGC	1 cut(s)	921
Cac8I	GCNNGC	3 cut(s)	42, 285, 1015
CaiI	CAGNNNCTG	1 cut(s)	950
CfoI	GCGC	1 cut(s)	1039
Cfr13I	GGNCC	3 cut(s)	597, 666, 947
Csp6I	GTAC	3 cut(s)	142, 241, 646
CviAII	CATG	4 cut(s)	74, 896, 987, 1061
CviQI	GTAC	3 cut(s)	142, 241, 646
DdeI	CTNAG	3 cut(s)	341, 389, 493
DinI	GGCGCC	1 cut(s)	1038
DpnI	GATC	6 cut(s)	53, 85, 201, 530, 1047, 1065
DpnII	GATC	6 cut(s)	51, 83, 199, 528, 1045, 1063
Eam1104I	CTCTTC	2 cut(s)	35, 803
EarI	CTCTTC	2 cut(s)	35, 803
Eco130I	CCWWGG	1 cut(s)	986
Eco47I	GGWCC	2 cut(s)	597, 947
Eco88I	CYCGRG	2 cut(s)	137, 360
EcoO109I	RGGNCCY	1 cut(s)	947
EcoRII	CCWGG	2 cut(s)	943, 1017
EcoT14I	CCWWGG	1 cut(s)	986
EgeI	GGCGCC	1 cut(s)	1038
EheI	GGCGCC	1 cut(s)	1038
ErhI	CCWWGG	1 cut(s)	986
Esp3I	CGTCTC	1 cut(s)	390
FaeI	CATG	4 cut(s)	77, 899, 990, 1064
FatI	CATG	4 cut(s)	73, 895, 986, 1060
FbaI	TGATCA	2 cut(s)	51, 1063
Fnu4HI	GCNGC	2 cut(s)	160, 261
FokI	GGATG	2 cut(s)	802, 927
Fsp4HI	GCNGC	2 cut(s)	160, 261
FspBI	CTAG	3 cut(s)	422, 506, 684
GlaI	GCGC	1 cut(s)	1038
GluI	GCNGC	2 cut(s)	160, 261
GsaI	CCCAGC	1 cut(s)	827
HaeII	RGCGCY	1 cut(s)	1040
HaeIII	GGCC	1 cut(s)	668
HapII	CCGG	2 cut(s)	92, 617
HhaI	GCGC	1 cut(s)	1039
Hin1I	GRCGYC	1 cut(s)	1037
Hin1II	CATG	4 cut(s)	77, 899, 990, 1064
Hin6I	GCGC	1 cut(s)	1037
HinP1I	GCGC	1 cut(s)	1037
HinfI	GANTC	6 cut(s)	153, 233, 329, 509, 539, 796
HpaII	CCGG	2 cut(s)	92, 617
HphI	GGTGA	9 cut(s)	46, 631, 745, 757, 773, 869, 920, 931, 1067
Hpy166II	GTNNAC	2 cut(s)	268, 370
Hpy188I	TCNGA	9 cut(s)	83, 130, 238, 328, 349, 398, 435, 544, 801
Hpy188III	TCNNGA	5 cut(s)	137, 461, 600, 617, 684
Hpy8I	GTNNAC	2 cut(s)	268, 370
HpyAV	CCTTC	2 cut(s)	689, 796
HpyCH4IV	ACGT	3 cut(s)	194, 377, 1113
HpyCH4V	TGCA	6 cut(s)	77, 221, 263, 930, 940, 964
HpyF3I	CTNAG	3 cut(s)	341, 389, 493
HpySE526I	ACGT	3 cut(s)	194, 377, 1113
Hsp92I	GRCGYC	1 cut(s)	1037
Hsp92II	CATG	4 cut(s)	77, 899, 990, 1064
HspAI	GCGC	1 cut(s)	1037
KasI	GGCGCC	1 cut(s)	1036
Kpn2I	TCCGGA	1 cut(s)	616
Ksp22I	TGATCA	2 cut(s)	51, 1063
Kzo9I	GATC	6 cut(s)	51, 83, 199, 528, 1045, 1063
LmnI	GCTCC	2 cut(s)	139, 619
Lsp1109I	GCAGC	2 cut(s)	146, 247
LweI	GCATC	1 cut(s)	949
MaeI	CTAG	3 cut(s)	422, 506, 684
MaeII	ACGT	3 cut(s)	194, 377, 1113
MaeIII	GTNAC	1 cut(s)	626
MalI	GATC	6 cut(s)	53, 85, 201, 530, 1047, 1065
MbiI	CCGCTC	1 cut(s)	340
MboI	GATC	6 cut(s)	51, 83, 199, 528, 1045, 1063
MhlI	GDGCHC	1 cut(s)	616
MluCI	AATT	2 cut(s)	122, 634
Mly113I	GGCGCC	1 cut(s)	1037
MlyI	GAGTC	2 cut(s)	503, 533
MmeI	TCCRAC	1 cut(s)	767
MnlI	CCTC	9 cut(s)	124, 214, 242, 334, 573, 751, 804, 862, 1003
MroI	TCCGGA	1 cut(s)	616
MslI	CAYNNNNRTG	2 cut(s)	72, 969
MspA1I	CMGCKG	1 cut(s)	159
MspI	CCGG	2 cut(s)	92, 617
MspR9I	CCNGG	3 cut(s)	92, 945, 1019
MvaI	CCWGG	2 cut(s)	945, 1019
MvnI	CGCG	1 cut(s)	772
NarI	GGCGCC	1 cut(s)	1037
NciI	CCSGG	1 cut(s)	92
NcoI	CCATGG	1 cut(s)	986
NdeII	GATC	6 cut(s)	51, 83, 199, 528, 1045, 1063
NlaIII	CATG	4 cut(s)	77, 899, 990, 1064
NlaIV	GGNNCC	4 cut(s)	135, 598, 890, 1038
NmuCI	GTSAC	1 cut(s)	626
NspI	RCATGY	1 cut(s)	77
NspV	TTCGAA	1 cut(s)	653
PaeR7I	CTCGAG	1 cut(s)	360
PfeI	GAWTC	4 cut(s)	153, 233, 329, 796
PflMI	CCANNNNNTGG	1 cut(s)	576
PfoI	TCCNGGA	1 cut(s)	90
PkrI	GCNGC	2 cut(s)	161, 262
PleI	GAGTC	2 cut(s)	503, 533
PluTI	GGCGCC	1 cut(s)	1040
PpsI	GAGTC	2 cut(s)	503, 533
PpuMI	RGGWCCY	1 cut(s)	947
Psp5II	RGGWCCY	1 cut(s)	947
Psp6I	CCWGG	2 cut(s)	943, 1017
PspFI	CCCAGC	1 cut(s)	823
PspGI	CCWGG	2 cut(s)	943, 1017
PspN4I	GGNNCC	4 cut(s)	135, 598, 890, 1038
PspPI	GGNCC	3 cut(s)	597, 666, 947
PspPPI	RGGWCCY	1 cut(s)	947
PspXI	VCTCGAGB	1 cut(s)	360
PstI	CTGCAG	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	950
PvuII	CAGCTG	1 cut(s)	159
RsaI	GTAC	3 cut(s)	143, 242, 647
RsaNI	GTAC	3 cut(s)	142, 241, 646
RseI	CAYNNNNRTG	2 cut(s)	72, 969
SatI	GCNGC	2 cut(s)	160, 261
Sau3AI	GATC	6 cut(s)	51, 83, 199, 528, 1045, 1063
Sau96I	GGNCC	3 cut(s)	597, 666, 947
ScaI	AGTACT	2 cut(s)	242, 647
SchI	GAGTC	2 cut(s)	503, 533
ScrFI	CCNGG	3 cut(s)	92, 945, 1019
SduI	GDGCHC	1 cut(s)	616
SfaNI	GCATC	1 cut(s)	949
SfcI	CTRYAG	3 cut(s)	261, 1051, 1100
SfoI	GGCGCC	1 cut(s)	1038
Sfr274I	CTCGAG	1 cut(s)	360
SfuI	TTCGAA	1 cut(s)	653
SinI	GGWCC	2 cut(s)	597, 947
SlaI	CTCGAG	1 cut(s)	360
SmiMI	CAYNNNNRTG	2 cut(s)	72, 969
SmlI	CTYRAG	3 cut(s)	244, 278, 360
SmoI	CTYRAG	3 cut(s)	244, 278, 360
Sse9I	AATT	2 cut(s)	122, 634
SsiI	CCGC	3 cut(s)	338, 772, 836
SspDI	GGCGCC	1 cut(s)	1036
SspMI	CTAG	3 cut(s)	422, 506, 684
StyD4I	CCNGG	3 cut(s)	90, 943, 1017
StyI	CCWWGG	1 cut(s)	986
TaiI	ACGT	3 cut(s)	197, 380, 1116
TaqI	TCGA	2 cut(s)	361, 653
TasI	AATT	2 cut(s)	122, 634
TatI	WGTACW	2 cut(s)	240, 645
TfiI	GAWTC	4 cut(s)	153, 233, 329, 796
TseFI	GTSAC	1 cut(s)	626
TseI	GCWGC	2 cut(s)	159, 260
Tsp45I	GTSAC	1 cut(s)	626
TspDTI	ATGAA	3 cut(s)	203, 307, 429
TspGWI	ACGGA	2 cut(s)	372, 689
Van91I	CCANNNNNTGG	1 cut(s)	576
VpaK11BI	GGWCC	2 cut(s)	597, 947
XapI	RAATTY	1 cut(s)	634
XbaI	TCTAGA	1 cut(s)	683
XceI	RCATGY	1 cut(s)	77
XcmI	CCANNNNNNNNNTGG	1 cut(s)	899
XhoI	CTCGAG	1 cut(s)	360
XspI	CTAG	3 cut(s)	422, 506, 684
ZrmI	AGTACT	2 cut(s)	242, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.