Domain associated at C-terminal with AAA
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| AAA_assoc | PF14363 | 33 - 118 | 2.8e-11 | Domain associated at C-terminal with AAA |
| AAA | PF00004 | 234 - 353 | 1.3e-15 | ATPase family associated with various cellular activities (AAA) |
| AAA_lid_At3g28540 | PF25568 | 354 - 417 | 5.6e-14 | At3g28540-like, AAA+ ATPase lid domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 669 |
| AatII | GACGTC | 1 cut(s) | 1316 |
| Acc65I | GGTACC | 1 cut(s) | 722 |
| AccB1I | GGYRCC | 1 cut(s) | 722 |
| AccI | GTMKAC | 3 cut(s) | 207, 1035, 1310 |
| AccII | CGCG | 1 cut(s) | 1196 |
| AciI | CCGC | 6 cut(s) | 957, 1170, 1353, 1356, 1362, 1379 |
| AclI | AACGTT | 2 cut(s) | 44, 177 |
| AclWI | GGATC | 5 cut(s) | 61, 74, 618, 977, 1447 |
| AcsI | RAATTY | 8 cut(s) | 164, 220, 241, 382, 420, 757, 907, 925 |
| AcuI | CTGAAG | 1 cut(s) | 635 |
| AcyI | GRCGYC | 1 cut(s) | 1313 |
| AfaI | GTAC | 3 cut(s) | 583, 724, 1041 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 966 |
| AflII | CTTAAG | 3 cut(s) | 226, 488, 818 |
| AflIII | ACRYGT | 1 cut(s) | 210 |
| AgsI | TTSAA | 9 cut(s) | 79, 169, 182, 394, 470, 925, 1136, 1148, 1225 |
| AluBI | AGCT | 8 cut(s) | 231, 407, 466, 487, 493, 738, 948, 1120 |
| AluI | AGCT | 8 cut(s) | 231, 407, 466, 487, 493, 738, 948, 1120 |
| Alw21I | GWGCWC | 1 cut(s) | 1116 |
| AlwI | GGATC | 5 cut(s) | 61, 74, 618, 977, 1447 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 458 |
| Ama87I | CYCGRG | 1 cut(s) | 1455 |
| AoxI | GGCC | 1 cut(s) | 679 |
| ApeKI | GCWGC | 1 cut(s) | 746 |
| ApoI | RAATTY | 8 cut(s) | 164, 220, 241, 382, 420, 757, 907, 925 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 260 |
| Asp718I | GGTACC | 1 cut(s) | 722 |
| AspLEI | GCGC | 1 cut(s) | 338 |
| AspS9I | GGNCC | 2 cut(s) | 679, 713 |
| AsuC2I | CCSGG | 3 cut(s) | 268, 1010, 1026 |
| AsuHPI | GGTGA | 3 cut(s) | 256, 1268, 1393 |
| AvaI | CYCGRG | 1 cut(s) | 1455 |
| AvaII | GGWCC | 1 cut(s) | 713 |
| BamHI | GGATCC | 1 cut(s) | 66 |
| BanI | GGYRCC | 1 cut(s) | 722 |
| BauI | CACGAG | 1 cut(s) | 1215 |
| BbsI | GAAGAC | 1 cut(s) | 369 |
| Bbv12I | GWGCWC | 1 cut(s) | 1116 |
| BbvI | GCAGC | 1 cut(s) | 758 |
| BccI | CCATC | 2 cut(s) | 365, 1247 |
| BceAI | ACGGC | 3 cut(s) | 666, 915, 1086 |
| BclI | TGATCA | 2 cut(s) | 517, 571 |
| BcnI | CCSGG | 3 cut(s) | 268, 1010, 1026 |
| BfaI | CTAG | 3 cut(s) | 339, 872, 1474 |
| BfoI | RGCGCY | 1 cut(s) | 339 |
| BfrI | CTTAAG | 3 cut(s) | 226, 488, 818 |
| BglII | AGATCT | 3 cut(s) | 787, 814, 868 |
| BisI | GCNGC | 2 cut(s) | 747, 1354 |
| BlsI | GCNGC | 2 cut(s) | 748, 1355 |
| Bme1390I | CCNGG | 3 cut(s) | 268, 1010, 1026 |
| Bme18I | GGWCC | 1 cut(s) | 713 |
| BmeT110I | CYCGRG | 1 cut(s) | 1455 |
| BmgT120I | GGNCC | 2 cut(s) | 679, 713 |
| BmiI | GGNNCC | 3 cut(s) | 68, 308, 724 |
| BmrFI | CCNGG | 3 cut(s) | 268, 1010, 1026 |
| BmrI | ACTGGG | 1 cut(s) | 999 |
| BmsI | GCATC | 1 cut(s) | 813 |
| BmuI | ACTGGG | 1 cut(s) | 999 |
| BpiI | GAAGAC | 1 cut(s) | 369 |
| BpmI | CTGGAG | 1 cut(s) | 422 |
| BpuEI | CTTGAG | 1 cut(s) | 1113 |
| BpuMI | CCSGG | 3 cut(s) | 268, 1010, 1026 |
| Bsa29I | ATCGAT | 2 cut(s) | 513, 560 |
| BsaBI | GATNNNNATC | 6 cut(s) | 519, 786, 813, 860, 873, 1257 |
| BsaHI | GRCGYC | 1 cut(s) | 1313 |
| BsaJI | CCNNGG | 1 cut(s) | 600 |
| BsaWI | WCCGGW | 3 cut(s) | 294, 719, 725 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 966 |
| Bse118I | RCCGGY | 1 cut(s) | 1375 |
| Bse1I | ACTGG | 4 cut(s) | 88, 134, 994, 1276 |
| Bse3DI | GCAATG | 1 cut(s) | 756 |
| Bse8I | GATNNNNATC | 6 cut(s) | 519, 786, 813, 860, 873, 1257 |
| BseCI | ATCGAT | 2 cut(s) | 513, 560 |
| BseDI | CCNNGG | 1 cut(s) | 600 |
| BseGI | GGATG | 3 cut(s) | 288, 574, 1327 |
| BseJI | GATNNNNATC | 6 cut(s) | 519, 786, 813, 860, 873, 1257 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 966 |
| BseMI | GCAATG | 1 cut(s) | 756 |
| BseMII | CTCAG | 1 cut(s) | 958 |
| BseNI | ACTGG | 4 cut(s) | 88, 134, 994, 1276 |
| BseXI | GCAGC | 1 cut(s) | 758 |
| Bsh1236I | CGCG | 1 cut(s) | 1196 |
| Bsh1285I | CGRYCG | 2 cut(s) | 237, 1025 |
| BshFI | GGCC | 1 cut(s) | 681 |
| BshNI | GGYRCC | 1 cut(s) | 722 |
| BshVI | ATCGAT | 2 cut(s) | 513, 560 |
| BsiEI | CGRYCG | 2 cut(s) | 237, 1025 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1116 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1455 |
| BsiSI | CCGG | 7 cut(s) | 267, 295, 720, 726, 1010, 1025, 1376 |
| BslFI | GGGAC | 2 cut(s) | 143, 1152 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 966 |
| BsmFI | GGGAC | 2 cut(s) | 143, 1152 |
| BsnI | GGCC | 1 cut(s) | 681 |
| BsoBI | CYCGRG | 1 cut(s) | 1455 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1116 |
| Bsp19I | CCATGG | 1 cut(s) | 600 |
| Bsp68I | TCGCGA | 1 cut(s) | 1196 |
| BspACI | CCGC | 6 cut(s) | 957, 1170, 1353, 1356, 1362, 1379 |
| BspANI | GGCC | 1 cut(s) | 681 |
| BspCNI | CTCAG | 1 cut(s) | 957 |
| BspDI | ATCGAT | 2 cut(s) | 513, 560 |
| BspFNI | CGCG | 1 cut(s) | 1196 |
| BspLI | GGNNCC | 3 cut(s) | 68, 308, 724 |
| BspPI | GGATC | 5 cut(s) | 61, 74, 618, 977, 1447 |
| BspT107I | GGYRCC | 1 cut(s) | 722 |
| BspTI | CTTAAG | 3 cut(s) | 226, 488, 818 |
| BsrDI | GCAATG | 1 cut(s) | 756 |
| BsrFI | RCCGGY | 1 cut(s) | 1375 |
| BsrI | ACTGG | 4 cut(s) | 88, 134, 994, 1276 |
| BssAI | RCCGGY | 1 cut(s) | 1375 |
| BssECI | CCNNGG | 1 cut(s) | 600 |
| BssNI | GRCGYC | 1 cut(s) | 1313 |
| BssSI | CACGAG | 1 cut(s) | 1215 |
| BssT1I | CCWWGG | 1 cut(s) | 600 |
| Bst2BI | CACGAG | 1 cut(s) | 1215 |
| Bst4CI | ACNGT | 4 cut(s) | 454, 552, 663, 1154 |
| Bst6I | CTCTTC | 1 cut(s) | 266 |
| BstACI | GRCGYC | 1 cut(s) | 1313 |
| BstAFI | CTTAAG | 3 cut(s) | 226, 488, 818 |
| BstC8I | GCNNGC | 2 cut(s) | 1086, 1377 |
| BstDEI | CTNAG | 4 cut(s) | 58, 763, 944, 1099 |
| BstDSI | CCRYGG | 1 cut(s) | 600 |
| BstF5I | GGATG | 3 cut(s) | 288, 574, 1327 |
| BstFNI | CGCG | 1 cut(s) | 1196 |
| BstH2I | RGCGCY | 1 cut(s) | 339 |
| BstHHI | GCGC | 1 cut(s) | 338 |
| BstMCI | CGRYCG | 2 cut(s) | 237, 1025 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 752, 1359 |
| BstNSI | RCATGY | 2 cut(s) | 214, 1232 |
| BstSCI | CCNGG | 3 cut(s) | 266, 1008, 1024 |
| BstUI | CGCG | 1 cut(s) | 1196 |
| BstV1I | GCAGC | 1 cut(s) | 758 |
| BstV2I | GAAGAC | 1 cut(s) | 369 |
| BstX2I | RGATCY | 5 cut(s) | 66, 610, 787, 814, 868 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 317 |
| BstYI | RGATCY | 5 cut(s) | 66, 610, 787, 814, 868 |
| Bsu15I | ATCGAT | 2 cut(s) | 513, 560 |
| BsuRI | GGCC | 1 cut(s) | 681 |
| BsuTUI | ATCGAT | 2 cut(s) | 513, 560 |
| BtgI | CCRYGG | 1 cut(s) | 600 |
| BtgZI | GCGATG | 1 cut(s) | 580 |
| BtsCI | GGATG | 3 cut(s) | 288, 574, 1327 |
| BtsIMutI | CAGTG | 2 cut(s) | 858, 930 |
| BtuMI | TCGCGA | 1 cut(s) | 1196 |
| Cac8I | GCNNGC | 2 cut(s) | 1086, 1377 |
| CaiI | CAGNNNCTG | 1 cut(s) | 458 |
| CfoI | GCGC | 1 cut(s) | 338 |
| Cfr10I | RCCGGY | 1 cut(s) | 1375 |
| Cfr13I | GGNCC | 2 cut(s) | 679, 713 |
| ClaI | ATCGAT | 2 cut(s) | 513, 560 |
| CseI | GACGC | 1 cut(s) | 1146 |
| Csp6I | GTAC | 3 cut(s) | 582, 723, 1040 |
| CviAII | CATG | 6 cut(s) | 97, 137, 211, 601, 973, 1229 |
| CviQI | GTAC | 3 cut(s) | 582, 723, 1040 |
| DdeI | CTNAG | 4 cut(s) | 58, 763, 944, 1099 |
| DraI | TTTAAA | 1 cut(s) | 1078 |
| Eam1104I | CTCTTC | 1 cut(s) | 266 |
| EarI | CTCTTC | 1 cut(s) | 266 |
| EciI | GGCGGA | 1 cut(s) | 1377 |
| Eco130I | CCWWGG | 1 cut(s) | 600 |
| Eco47I | GGWCC | 1 cut(s) | 713 |
| Eco57I | CTGAAG | 1 cut(s) | 635 |
| Eco88I | CYCGRG | 1 cut(s) | 1455 |
| EcoRI | GAATTC | 3 cut(s) | 164, 241, 420 |
| EcoT14I | CCWWGG | 1 cut(s) | 600 |
| ErhI | CCWWGG | 1 cut(s) | 600 |
| FaeI | CATG | 6 cut(s) | 100, 140, 214, 604, 976, 1232 |
| FaqI | GGGAC | 2 cut(s) | 143, 1152 |
| FatI | CATG | 6 cut(s) | 96, 136, 210, 600, 972, 1228 |
| FauI | CCCGC | 1 cut(s) | 1177 |
| FbaI | TGATCA | 2 cut(s) | 517, 571 |
| FblI | GTMKAC | 3 cut(s) | 207, 1035, 1310 |
| Fnu4HI | GCNGC | 2 cut(s) | 747, 1354 |
| FokI | GGATG | 3 cut(s) | 275, 561, 1334 |
| Fsp4HI | GCNGC | 2 cut(s) | 747, 1354 |
| FspBI | CTAG | 3 cut(s) | 339, 872, 1474 |
| GlaI | GCGC | 1 cut(s) | 337 |
| GluI | GCNGC | 2 cut(s) | 747, 1354 |
| GsuI | CTGGAG | 1 cut(s) | 422 |
| HaeII | RGCGCY | 1 cut(s) | 339 |
| HaeIII | GGCC | 1 cut(s) | 681 |
| HapII | CCGG | 7 cut(s) | 267, 295, 720, 726, 1010, 1025, 1376 |
| HgaI | GACGC | 1 cut(s) | 1146 |
| HhaI | GCGC | 1 cut(s) | 338 |
| Hin1I | GRCGYC | 1 cut(s) | 1313 |
| Hin1II | CATG | 6 cut(s) | 100, 140, 214, 604, 976, 1232 |
| Hin6I | GCGC | 1 cut(s) | 336 |
| HinP1I | GCGC | 1 cut(s) | 336 |
| HincII | GTYRAC | 3 cut(s) | 42, 1036, 1311 |
| HindII | GTYRAC | 3 cut(s) | 42, 1036, 1311 |
| HindIII | AAGCTT | 3 cut(s) | 491, 736, 1118 |
| HpaII | CCGG | 7 cut(s) | 267, 295, 720, 726, 1010, 1025, 1376 |
| HphI | GGTGA | 3 cut(s) | 256, 1268, 1393 |
| Hpy166II | GTNNAC | 9 cut(s) | 42, 142, 208, 659, 778, 981, 1036, 1042, 1311 |
| Hpy8I | GTNNAC | 9 cut(s) | 42, 142, 208, 659, 778, 981, 1036, 1042, 1311 |
| Hpy99I | CGWCG | 8 cut(s) | 326, 509, 746, 892, 1040, 1281, 1315, 1318 |
| HpyAV | CCTTC | 4 cut(s) | 595, 726, 1130, 1378 |
| HpyCH4III | ACNGT | 4 cut(s) | 454, 552, 663, 1154 |
| HpyCH4IV | ACGT | 6 cut(s) | 44, 177, 504, 1038, 1279, 1313 |
| HpyCH4V | TGCA | 3 cut(s) | 954, 1220, 1246 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 752, 1359 |
| HpyF3I | CTNAG | 4 cut(s) | 58, 763, 944, 1099 |
| HpySE526I | ACGT | 6 cut(s) | 44, 177, 504, 1038, 1279, 1313 |
| Hsp92I | GRCGYC | 1 cut(s) | 1313 |
| Hsp92II | CATG | 6 cut(s) | 100, 140, 214, 604, 976, 1232 |
| HspAI | GCGC | 1 cut(s) | 336 |
| KpnI | GGTACC | 1 cut(s) | 726 |
| KroI | GCCGGC | 1 cut(s) | 1375 |
| KroNI | GCCGGC | 1 cut(s) | 1377 |
| Ksp22I | TGATCA | 2 cut(s) | 517, 571 |
| LmnI | GCTCC | 1 cut(s) | 374 |
| Lsp1109I | GCAGC | 1 cut(s) | 758 |
| LweI | GCATC | 1 cut(s) | 813 |
| MaeI | CTAG | 3 cut(s) | 339, 872, 1474 |
| MaeII | ACGT | 6 cut(s) | 44, 177, 504, 1038, 1279, 1313 |
| MaeIII | GTNAC | 3 cut(s) | 30, 831, 1202 |
| MflI | RGATCY | 5 cut(s) | 66, 610, 787, 814, 868 |
| MhlI | GDGCHC | 1 cut(s) | 1116 |
| MlyI | GAGTC | 2 cut(s) | 1174, 1207 |
| MmeI | TCCRAC | 4 cut(s) | 303, 329, 487, 1296 |
| MreI | CGCCGGCG | 1 cut(s) | 1375 |
| MroNI | GCCGGC | 1 cut(s) | 1375 |
| MroXI | GAANNNNTTC | 1 cut(s) | 260 |
| MseI | TTAA | 7 cut(s) | 227, 354, 489, 819, 1077, 1107, 1419 |
| MslI | CAYNNNNRTG | 1 cut(s) | 599 |
| MspCI | CTTAAG | 3 cut(s) | 226, 488, 818 |
| MspI | CCGG | 7 cut(s) | 267, 295, 720, 726, 1010, 1025, 1376 |
| MspR9I | CCNGG | 3 cut(s) | 268, 1010, 1026 |
| MvnI | CGCG | 1 cut(s) | 1196 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 752, 1359 |
| NaeI | GCCGGC | 1 cut(s) | 1377 |
| NciI | CCSGG | 3 cut(s) | 268, 1010, 1026 |
| NcoI | CCATGG | 1 cut(s) | 600 |
| NgoMIV | GCCGGC | 1 cut(s) | 1375 |
| NlaIII | CATG | 6 cut(s) | 100, 140, 214, 604, 976, 1232 |
| NlaIV | GGNNCC | 3 cut(s) | 68, 308, 724 |
| NmeAIII | GCCGAG | 2 cut(s) | 312, 1198 |
| NruI | TCGCGA | 1 cut(s) | 1196 |
| NspI | RCATGY | 2 cut(s) | 214, 1232 |
| PaeR7I | CTCGAG | 1 cut(s) | 1455 |
| PciI | ACATGT | 1 cut(s) | 210 |
| PcsI | WCGNNNNNNNCGW | 6 cut(s) | 321, 363, 510, 679, 777, 1307 |
| PdiI | GCCGGC | 1 cut(s) | 1377 |
| PdmI | GAANNNNTTC | 1 cut(s) | 260 |
| PfeI | GAWTC | 9 cut(s) | 7, 17, 187, 397, 510, 562, 641, 809, 1198 |
| PflFI | GACNNNGTC | 1 cut(s) | 1026 |
| PkrI | GCNGC | 2 cut(s) | 748, 1355 |
| Ple19I | CGATCG | 1 cut(s) | 237 |
| PleI | GAGTC | 2 cut(s) | 1173, 1207 |
| PpsI | GAGTC | 2 cut(s) | 1173, 1207 |
| PscI | ACATGT | 1 cut(s) | 210 |
| PsiI | TTATAA | 1 cut(s) | 669 |
| Psp1406I | AACGTT | 2 cut(s) | 44, 177 |
| PspN4I | GGNNCC | 3 cut(s) | 68, 308, 724 |
| PspPI | GGNCC | 2 cut(s) | 679, 713 |
| PstNI | CAGNNNCTG | 1 cut(s) | 458 |
| PsuI | RGATCY | 5 cut(s) | 66, 610, 787, 814, 868 |
| PsyI | GACNNNGTC | 1 cut(s) | 1026 |
| PvuI | CGATCG | 1 cut(s) | 237 |
| RruI | TCGCGA | 1 cut(s) | 1196 |
| RsaI | GTAC | 3 cut(s) | 583, 724, 1041 |
| RsaNI | GTAC | 3 cut(s) | 582, 723, 1040 |
| RseI | CAYNNNNRTG | 1 cut(s) | 599 |
| SalI | GTCGAC | 2 cut(s) | 1034, 1309 |
| SaqAI | TTAA | 7 cut(s) | 227, 354, 489, 819, 1077, 1107, 1419 |
| SatI | GCNGC | 2 cut(s) | 747, 1354 |
| Sau96I | GGNCC | 2 cut(s) | 679, 713 |
| SchI | GAGTC | 2 cut(s) | 1174, 1207 |
| ScrFI | CCNGG | 3 cut(s) | 268, 1010, 1026 |
| SduI | GDGCHC | 1 cut(s) | 1116 |
| SfaNI | GCATC | 1 cut(s) | 813 |
| Sfr274I | CTCGAG | 1 cut(s) | 1455 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1375 |
| SinI | GGWCC | 1 cut(s) | 713 |
| SlaI | CTCGAG | 1 cut(s) | 1455 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 599 |
| SmlI | CTYRAG | 5 cut(s) | 226, 488, 818, 1128, 1455 |
| SmoI | CTYRAG | 5 cut(s) | 226, 488, 818, 1128, 1455 |
| SsiI | CCGC | 6 cut(s) | 957, 1170, 1353, 1356, 1362, 1379 |
| SspI | AATATT | 1 cut(s) | 1143 |
| SspMI | CTAG | 3 cut(s) | 339, 872, 1474 |
| StyD4I | CCNGG | 3 cut(s) | 266, 1008, 1024 |
| StyI | CCWWGG | 1 cut(s) | 600 |
| TaaI | ACNGT | 4 cut(s) | 454, 552, 663, 1154 |
| TaiI | ACGT | 6 cut(s) | 47, 180, 507, 1041, 1282, 1316 |
| TauI | GCSGC | 1 cut(s) | 1356 |
| TfiI | GAWTC | 9 cut(s) | 7, 17, 187, 397, 510, 562, 641, 809, 1198 |
| Tru1I | TTAA | 7 cut(s) | 227, 354, 489, 819, 1077, 1107, 1419 |
| Tru9I | TTAA | 7 cut(s) | 227, 354, 489, 819, 1077, 1107, 1419 |
| TscAI | CASTG | 2 cut(s) | 858, 937 |
| TseI | GCWGC | 1 cut(s) | 746 |
| TspDTI | ATGAA | 4 cut(s) | 125, 487, 978, 1037 |
| TspGWI | ACGGA | 8 cut(s) | 372, 430, 555, 561, 623, 709, 726, 982 |
| TspRI | CASTG | 2 cut(s) | 858, 937 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1026 |
| Vha464I | CTTAAG | 3 cut(s) | 226, 488, 818 |
| VpaK11BI | GGWCC | 1 cut(s) | 713 |
| XapI | RAATTY | 8 cut(s) | 164, 220, 241, 382, 420, 757, 907, 925 |
| XbaI | TCTAGA | 1 cut(s) | 871 |
| XceI | RCATGY | 2 cut(s) | 214, 1232 |
| XhoI | CTCGAG | 1 cut(s) | 1455 |
| XmiI | GTMKAC | 3 cut(s) | 207, 1035, 1310 |
| XmnI | GAANNNNTTC | 1 cut(s) | 260 |
| XspI | CTAG | 3 cut(s) | 339, 872, 1474 |
| ZraI | GACGTC | 1 cut(s) | 1314 |