AT2G46620

Domain associated at C-terminal with AAA

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
19138769 .. 19140849
2081 bp
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UTR
Exon/CDS
Intron
AT2G46620.1

Sequence Viewer

Length: 1476 bp
ATGGGGATTCTTTGGGATTCGTTTCTCTTGTTACTTGTGTCAACGTTTGCTCTGTTCTTAGTTAGGATCCTGTTATTCAAAACTGGATTGATTTACATGGTCAAGTTATGGCGTAGGAAGATCATCGACTGGTTTCATGTTTACCAATTCTACAAAGTCCCAGAATTCAACGACAACGTTCAAGAGAATCATCTCTACCAAAAAGTCTACATGTATCTAAATTCCTTAAGCTCGATCGAGAATTCTGATTTCACGAACCTCTTCACCGGGAAAAAGTCCAACGAAATCATCCTCCGGTTAGATCGGAACCAAGTCGTTGGCGACGAGTTTCTCGGCGCTAGAGTTTGTTGGATTAACGGAGAAGACGAAGATGGAGCGAGGAATTTCGTTTTGAAGATTCGTAAAGCTGACAAACGGAGAATTCTCGGTTCTTATCTCCAGCATATACATACAGTATCTGATGAGCTTGAACAGAGGAACACAGAGCTTAAGCTTTTCATCAACGTCGGAATCGATGATCATCTGAATAAGAAGAAGAAGAAGAACGGACGGTGGAGATCGATTCCGTTTGATCATCCTTGTACCTTCGACAACATCGCCATGGAAACGGATCTGAAGAACAAAGTCAAATCTGATCTCGAATCTTTCCTCAAAGGTAAACAGTATTATAATCGTCTGGGCCGTGTTTGGAAACGGAGTTATCTCTTATACGGACCTTCCGGTACCGGAAAATCAAGCTTCGTCGCAGCAATGGCGAATTTCTTAGATTACGATGTTTACGATATAGATCTCTCCAAAGTAGTTGATGATTCAGATCTTAAGATGCTTCTGTTACAAACCAGAGGCAAATCAGTGATCGTGATCGAAGATCTAGATCGACACCTCTCGACGAAATCAACGGCTGTGAATTTATCTGGGATTTTGAATTTCACTGATAGTATTCTCAGCTCTTGCACCGCCGATGAACGGATCATGGTGTTTACGATGACTGGGAAAGAACAAATTGACCCGGCTATGCTTCGACCGGGTCGGGTCGACGTACACATTCATTTTCCCTTATGTGATTTCACGGCGTTTAAAACGCTCGCTAATAACTACTTAGGTGTTAAAGAGCACAAGCTTTTCTCTCAAGTTGAAGGAATATTTCAAAACGGTGCGTCTTTGAGTCCCGCCGAGATCGGAGAGTTGATGATCGCGAATCGTAACTCGCCGACTCGTGCATTGAAGCATGTCATCAATGCTTTGCAGACTGATGGTGATCGGAGAGGAACTGGACGACGTTTGCTTTTAGAAAATGGTTCGAGAAAGTCGACGTCGGAGGATGTTTCTGATGATATGAGTGGTTCGCTTTGCGGCGGTGGCGGAGGAAGTTCGCCGGCGGTGAAGGAGTTTAGGAAGTTGTATGGGTTGTTGAGAATTAAAAGTAGTAGAAAATCTGGATCGTTCGATGTGGCTCGAGAGATGAGGGACGGCTAG

Protein Analysis

491

Amino Acids

55.91

Weight (kDa)

9.12

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 33 - 118 2.8e-11 Domain associated at C-terminal with AAA
AAA PF00004 234 - 353 1.3e-15 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 354 - 417 5.6e-14 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 669
AatII GACGTC 1 cut(s) 1316
Acc65I GGTACC 1 cut(s) 722
AccB1I GGYRCC 1 cut(s) 722
AccI GTMKAC 3 cut(s) 207, 1035, 1310
AccII CGCG 1 cut(s) 1196
AciI CCGC 6 cut(s) 957, 1170, 1353, 1356, 1362, 1379
AclI AACGTT 2 cut(s) 44, 177
AclWI GGATC 5 cut(s) 61, 74, 618, 977, 1447
AcsI RAATTY 8 cut(s) 164, 220, 241, 382, 420, 757, 907, 925
AcuI CTGAAG 1 cut(s) 635
AcyI GRCGYC 1 cut(s) 1313
AfaI GTAC 3 cut(s) 583, 724, 1041
AfiI CCNNNNNNNGG 1 cut(s) 966
AflII CTTAAG 3 cut(s) 226, 488, 818
AflIII ACRYGT 1 cut(s) 210
AgsI TTSAA 9 cut(s) 79, 169, 182, 394, 470, 925, 1136, 1148, 1225
AluBI AGCT 8 cut(s) 231, 407, 466, 487, 493, 738, 948, 1120
AluI AGCT 8 cut(s) 231, 407, 466, 487, 493, 738, 948, 1120
Alw21I GWGCWC 1 cut(s) 1116
AlwI GGATC 5 cut(s) 61, 74, 618, 977, 1447
AlwNI CAGNNNCTG 1 cut(s) 458
Ama87I CYCGRG 1 cut(s) 1455
AoxI GGCC 1 cut(s) 679
ApeKI GCWGC 1 cut(s) 746
ApoI RAATTY 8 cut(s) 164, 220, 241, 382, 420, 757, 907, 925
Asp700I GAANNNNTTC 1 cut(s) 260
Asp718I GGTACC 1 cut(s) 722
AspLEI GCGC 1 cut(s) 338
AspS9I GGNCC 2 cut(s) 679, 713
AsuC2I CCSGG 3 cut(s) 268, 1010, 1026
AsuHPI GGTGA 3 cut(s) 256, 1268, 1393
AvaI CYCGRG 1 cut(s) 1455
AvaII GGWCC 1 cut(s) 713
BamHI GGATCC 1 cut(s) 66
BanI GGYRCC 1 cut(s) 722
BauI CACGAG 1 cut(s) 1215
BbsI GAAGAC 1 cut(s) 369
Bbv12I GWGCWC 1 cut(s) 1116
BbvI GCAGC 1 cut(s) 758
BccI CCATC 2 cut(s) 365, 1247
BceAI ACGGC 3 cut(s) 666, 915, 1086
BclI TGATCA 2 cut(s) 517, 571
BcnI CCSGG 3 cut(s) 268, 1010, 1026
BfaI CTAG 3 cut(s) 339, 872, 1474
BfoI RGCGCY 1 cut(s) 339
BfrI CTTAAG 3 cut(s) 226, 488, 818
BglII AGATCT 3 cut(s) 787, 814, 868
BisI GCNGC 2 cut(s) 747, 1354
BlsI GCNGC 2 cut(s) 748, 1355
Bme1390I CCNGG 3 cut(s) 268, 1010, 1026
Bme18I GGWCC 1 cut(s) 713
BmeT110I CYCGRG 1 cut(s) 1455
BmgT120I GGNCC 2 cut(s) 679, 713
BmiI GGNNCC 3 cut(s) 68, 308, 724
BmrFI CCNGG 3 cut(s) 268, 1010, 1026
BmrI ACTGGG 1 cut(s) 999
BmsI GCATC 1 cut(s) 813
BmuI ACTGGG 1 cut(s) 999
BpiI GAAGAC 1 cut(s) 369
BpmI CTGGAG 1 cut(s) 422
BpuEI CTTGAG 1 cut(s) 1113
BpuMI CCSGG 3 cut(s) 268, 1010, 1026
Bsa29I ATCGAT 2 cut(s) 513, 560
BsaBI GATNNNNATC 6 cut(s) 519, 786, 813, 860, 873, 1257
BsaHI GRCGYC 1 cut(s) 1313
BsaJI CCNNGG 1 cut(s) 600
BsaWI WCCGGW 3 cut(s) 294, 719, 725
Bsc4I CCNNNNNNNGG 1 cut(s) 966
Bse118I RCCGGY 1 cut(s) 1375
Bse1I ACTGG 4 cut(s) 88, 134, 994, 1276
Bse3DI GCAATG 1 cut(s) 756
Bse8I GATNNNNATC 6 cut(s) 519, 786, 813, 860, 873, 1257
BseCI ATCGAT 2 cut(s) 513, 560
BseDI CCNNGG 1 cut(s) 600
BseGI GGATG 3 cut(s) 288, 574, 1327
BseJI GATNNNNATC 6 cut(s) 519, 786, 813, 860, 873, 1257
BseLI CCNNNNNNNGG 1 cut(s) 966
BseMI GCAATG 1 cut(s) 756
BseMII CTCAG 1 cut(s) 958
BseNI ACTGG 4 cut(s) 88, 134, 994, 1276
BseXI GCAGC 1 cut(s) 758
Bsh1236I CGCG 1 cut(s) 1196
Bsh1285I CGRYCG 2 cut(s) 237, 1025
BshFI GGCC 1 cut(s) 681
BshNI GGYRCC 1 cut(s) 722
BshVI ATCGAT 2 cut(s) 513, 560
BsiEI CGRYCG 2 cut(s) 237, 1025
BsiHKAI GWGCWC 1 cut(s) 1116
BsiHKCI CYCGRG 1 cut(s) 1455
BsiSI CCGG 7 cut(s) 267, 295, 720, 726, 1010, 1025, 1376
BslFI GGGAC 2 cut(s) 143, 1152
BslI CCNNNNNNNGG 1 cut(s) 966
BsmFI GGGAC 2 cut(s) 143, 1152
BsnI GGCC 1 cut(s) 681
BsoBI CYCGRG 1 cut(s) 1455
Bsp1286I GDGCHC 1 cut(s) 1116
Bsp19I CCATGG 1 cut(s) 600
Bsp68I TCGCGA 1 cut(s) 1196
BspACI CCGC 6 cut(s) 957, 1170, 1353, 1356, 1362, 1379
BspANI GGCC 1 cut(s) 681
BspCNI CTCAG 1 cut(s) 957
BspDI ATCGAT 2 cut(s) 513, 560
BspFNI CGCG 1 cut(s) 1196
BspLI GGNNCC 3 cut(s) 68, 308, 724
BspPI GGATC 5 cut(s) 61, 74, 618, 977, 1447
BspT107I GGYRCC 1 cut(s) 722
BspTI CTTAAG 3 cut(s) 226, 488, 818
BsrDI GCAATG 1 cut(s) 756
BsrFI RCCGGY 1 cut(s) 1375
BsrI ACTGG 4 cut(s) 88, 134, 994, 1276
BssAI RCCGGY 1 cut(s) 1375
BssECI CCNNGG 1 cut(s) 600
BssNI GRCGYC 1 cut(s) 1313
BssSI CACGAG 1 cut(s) 1215
BssT1I CCWWGG 1 cut(s) 600
Bst2BI CACGAG 1 cut(s) 1215
Bst4CI ACNGT 4 cut(s) 454, 552, 663, 1154
Bst6I CTCTTC 1 cut(s) 266
BstACI GRCGYC 1 cut(s) 1313
BstAFI CTTAAG 3 cut(s) 226, 488, 818
BstC8I GCNNGC 2 cut(s) 1086, 1377
BstDEI CTNAG 4 cut(s) 58, 763, 944, 1099
BstDSI CCRYGG 1 cut(s) 600
BstF5I GGATG 3 cut(s) 288, 574, 1327
BstFNI CGCG 1 cut(s) 1196
BstH2I RGCGCY 1 cut(s) 339
BstHHI GCGC 1 cut(s) 338
BstMCI CGRYCG 2 cut(s) 237, 1025
BstMWI GCNNNNNNNGC 2 cut(s) 752, 1359
BstNSI RCATGY 2 cut(s) 214, 1232
BstSCI CCNGG 3 cut(s) 266, 1008, 1024
BstUI CGCG 1 cut(s) 1196
BstV1I GCAGC 1 cut(s) 758
BstV2I GAAGAC 1 cut(s) 369
BstX2I RGATCY 5 cut(s) 66, 610, 787, 814, 868
BstXI CCANNNNNNTGG 1 cut(s) 317
BstYI RGATCY 5 cut(s) 66, 610, 787, 814, 868
Bsu15I ATCGAT 2 cut(s) 513, 560
BsuRI GGCC 1 cut(s) 681
BsuTUI ATCGAT 2 cut(s) 513, 560
BtgI CCRYGG 1 cut(s) 600
BtgZI GCGATG 1 cut(s) 580
BtsCI GGATG 3 cut(s) 288, 574, 1327
BtsIMutI CAGTG 2 cut(s) 858, 930
BtuMI TCGCGA 1 cut(s) 1196
Cac8I GCNNGC 2 cut(s) 1086, 1377
CaiI CAGNNNCTG 1 cut(s) 458
CfoI GCGC 1 cut(s) 338
Cfr10I RCCGGY 1 cut(s) 1375
Cfr13I GGNCC 2 cut(s) 679, 713
ClaI ATCGAT 2 cut(s) 513, 560
CseI GACGC 1 cut(s) 1146
Csp6I GTAC 3 cut(s) 582, 723, 1040
CviAII CATG 6 cut(s) 97, 137, 211, 601, 973, 1229
CviQI GTAC 3 cut(s) 582, 723, 1040
DdeI CTNAG 4 cut(s) 58, 763, 944, 1099
DraI TTTAAA 1 cut(s) 1078
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
EciI GGCGGA 1 cut(s) 1377
Eco130I CCWWGG 1 cut(s) 600
Eco47I GGWCC 1 cut(s) 713
Eco57I CTGAAG 1 cut(s) 635
Eco88I CYCGRG 1 cut(s) 1455
EcoRI GAATTC 3 cut(s) 164, 241, 420
EcoT14I CCWWGG 1 cut(s) 600
ErhI CCWWGG 1 cut(s) 600
FaeI CATG 6 cut(s) 100, 140, 214, 604, 976, 1232
FaqI GGGAC 2 cut(s) 143, 1152
FatI CATG 6 cut(s) 96, 136, 210, 600, 972, 1228
FauI CCCGC 1 cut(s) 1177
FbaI TGATCA 2 cut(s) 517, 571
FblI GTMKAC 3 cut(s) 207, 1035, 1310
Fnu4HI GCNGC 2 cut(s) 747, 1354
FokI GGATG 3 cut(s) 275, 561, 1334
Fsp4HI GCNGC 2 cut(s) 747, 1354
FspBI CTAG 3 cut(s) 339, 872, 1474
GlaI GCGC 1 cut(s) 337
GluI GCNGC 2 cut(s) 747, 1354
GsuI CTGGAG 1 cut(s) 422
HaeII RGCGCY 1 cut(s) 339
HaeIII GGCC 1 cut(s) 681
HapII CCGG 7 cut(s) 267, 295, 720, 726, 1010, 1025, 1376
HgaI GACGC 1 cut(s) 1146
HhaI GCGC 1 cut(s) 338
Hin1I GRCGYC 1 cut(s) 1313
Hin1II CATG 6 cut(s) 100, 140, 214, 604, 976, 1232
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HincII GTYRAC 3 cut(s) 42, 1036, 1311
HindII GTYRAC 3 cut(s) 42, 1036, 1311
HindIII AAGCTT 3 cut(s) 491, 736, 1118
HpaII CCGG 7 cut(s) 267, 295, 720, 726, 1010, 1025, 1376
HphI GGTGA 3 cut(s) 256, 1268, 1393
Hpy166II GTNNAC 9 cut(s) 42, 142, 208, 659, 778, 981, 1036, 1042, 1311
Hpy8I GTNNAC 9 cut(s) 42, 142, 208, 659, 778, 981, 1036, 1042, 1311
Hpy99I CGWCG 8 cut(s) 326, 509, 746, 892, 1040, 1281, 1315, 1318
HpyAV CCTTC 4 cut(s) 595, 726, 1130, 1378
HpyCH4III ACNGT 4 cut(s) 454, 552, 663, 1154
HpyCH4IV ACGT 6 cut(s) 44, 177, 504, 1038, 1279, 1313
HpyCH4V TGCA 3 cut(s) 954, 1220, 1246
HpyF10VI GCNNNNNNNGC 2 cut(s) 752, 1359
HpyF3I CTNAG 4 cut(s) 58, 763, 944, 1099
HpySE526I ACGT 6 cut(s) 44, 177, 504, 1038, 1279, 1313
Hsp92I GRCGYC 1 cut(s) 1313
Hsp92II CATG 6 cut(s) 100, 140, 214, 604, 976, 1232
HspAI GCGC 1 cut(s) 336
KpnI GGTACC 1 cut(s) 726
KroI GCCGGC 1 cut(s) 1375
KroNI GCCGGC 1 cut(s) 1377
Ksp22I TGATCA 2 cut(s) 517, 571
LmnI GCTCC 1 cut(s) 374
Lsp1109I GCAGC 1 cut(s) 758
LweI GCATC 1 cut(s) 813
MaeI CTAG 3 cut(s) 339, 872, 1474
MaeII ACGT 6 cut(s) 44, 177, 504, 1038, 1279, 1313
MaeIII GTNAC 3 cut(s) 30, 831, 1202
MflI RGATCY 5 cut(s) 66, 610, 787, 814, 868
MhlI GDGCHC 1 cut(s) 1116
MlyI GAGTC 2 cut(s) 1174, 1207
MmeI TCCRAC 4 cut(s) 303, 329, 487, 1296
MreI CGCCGGCG 1 cut(s) 1375
MroNI GCCGGC 1 cut(s) 1375
MroXI GAANNNNTTC 1 cut(s) 260
MseI TTAA 7 cut(s) 227, 354, 489, 819, 1077, 1107, 1419
MslI CAYNNNNRTG 1 cut(s) 599
MspCI CTTAAG 3 cut(s) 226, 488, 818
MspI CCGG 7 cut(s) 267, 295, 720, 726, 1010, 1025, 1376
MspR9I CCNGG 3 cut(s) 268, 1010, 1026
MvnI CGCG 1 cut(s) 1196
MwoI GCNNNNNNNGC 2 cut(s) 752, 1359
NaeI GCCGGC 1 cut(s) 1377
NciI CCSGG 3 cut(s) 268, 1010, 1026
NcoI CCATGG 1 cut(s) 600
NgoMIV GCCGGC 1 cut(s) 1375
NlaIII CATG 6 cut(s) 100, 140, 214, 604, 976, 1232
NlaIV GGNNCC 3 cut(s) 68, 308, 724
NmeAIII GCCGAG 2 cut(s) 312, 1198
NruI TCGCGA 1 cut(s) 1196
NspI RCATGY 2 cut(s) 214, 1232
PaeR7I CTCGAG 1 cut(s) 1455
PciI ACATGT 1 cut(s) 210
PcsI WCGNNNNNNNCGW 6 cut(s) 321, 363, 510, 679, 777, 1307
PdiI GCCGGC 1 cut(s) 1377
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 9 cut(s) 7, 17, 187, 397, 510, 562, 641, 809, 1198
PflFI GACNNNGTC 1 cut(s) 1026
PkrI GCNGC 2 cut(s) 748, 1355
Ple19I CGATCG 1 cut(s) 237
PleI GAGTC 2 cut(s) 1173, 1207
PpsI GAGTC 2 cut(s) 1173, 1207
PscI ACATGT 1 cut(s) 210
PsiI TTATAA 1 cut(s) 669
Psp1406I AACGTT 2 cut(s) 44, 177
PspN4I GGNNCC 3 cut(s) 68, 308, 724
PspPI GGNCC 2 cut(s) 679, 713
PstNI CAGNNNCTG 1 cut(s) 458
PsuI RGATCY 5 cut(s) 66, 610, 787, 814, 868
PsyI GACNNNGTC 1 cut(s) 1026
PvuI CGATCG 1 cut(s) 237
RruI TCGCGA 1 cut(s) 1196
RsaI GTAC 3 cut(s) 583, 724, 1041
RsaNI GTAC 3 cut(s) 582, 723, 1040
RseI CAYNNNNRTG 1 cut(s) 599
SalI GTCGAC 2 cut(s) 1034, 1309
SaqAI TTAA 7 cut(s) 227, 354, 489, 819, 1077, 1107, 1419
SatI GCNGC 2 cut(s) 747, 1354
Sau96I GGNCC 2 cut(s) 679, 713
SchI GAGTC 2 cut(s) 1174, 1207
ScrFI CCNGG 3 cut(s) 268, 1010, 1026
SduI GDGCHC 1 cut(s) 1116
SfaNI GCATC 1 cut(s) 813
Sfr274I CTCGAG 1 cut(s) 1455
SgrAI CRCCGGYG 1 cut(s) 1375
SinI GGWCC 1 cut(s) 713
SlaI CTCGAG 1 cut(s) 1455
SmiMI CAYNNNNRTG 1 cut(s) 599
SmlI CTYRAG 5 cut(s) 226, 488, 818, 1128, 1455
SmoI CTYRAG 5 cut(s) 226, 488, 818, 1128, 1455
SsiI CCGC 6 cut(s) 957, 1170, 1353, 1356, 1362, 1379
SspI AATATT 1 cut(s) 1143
SspMI CTAG 3 cut(s) 339, 872, 1474
StyD4I CCNGG 3 cut(s) 266, 1008, 1024
StyI CCWWGG 1 cut(s) 600
TaaI ACNGT 4 cut(s) 454, 552, 663, 1154
TaiI ACGT 6 cut(s) 47, 180, 507, 1041, 1282, 1316
TauI GCSGC 1 cut(s) 1356
TfiI GAWTC 9 cut(s) 7, 17, 187, 397, 510, 562, 641, 809, 1198
Tru1I TTAA 7 cut(s) 227, 354, 489, 819, 1077, 1107, 1419
Tru9I TTAA 7 cut(s) 227, 354, 489, 819, 1077, 1107, 1419
TscAI CASTG 2 cut(s) 858, 937
TseI GCWGC 1 cut(s) 746
TspDTI ATGAA 4 cut(s) 125, 487, 978, 1037
TspGWI ACGGA 8 cut(s) 372, 430, 555, 561, 623, 709, 726, 982
TspRI CASTG 2 cut(s) 858, 937
Tth111I GACNNNGTC 1 cut(s) 1026
Vha464I CTTAAG 3 cut(s) 226, 488, 818
VpaK11BI GGWCC 1 cut(s) 713
XapI RAATTY 8 cut(s) 164, 220, 241, 382, 420, 757, 907, 925
XbaI TCTAGA 1 cut(s) 871
XceI RCATGY 2 cut(s) 214, 1232
XhoI CTCGAG 1 cut(s) 1455
XmiI GTMKAC 3 cut(s) 207, 1035, 1310
XmnI GAANNNNTTC 1 cut(s) 260
XspI CTAG 3 cut(s) 339, 872, 1474
ZraI GACGTC 1 cut(s) 1314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.