FvH4_7g32500

mitochondrial chaperone

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
23365451 .. 23366932
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g32500.t1

Sequence Viewer

Length: 1482 bp
ATGGTCCGGTTCATGGGTGTCGTCTACTTCATCCTCTTCCTCATACCTGTCTTCTATGTTCTTAGGTTCTTGTCCAAAACATCTCTGCTTCACATGCTCTTGAAATCATGGCAATCCTTAATCGACAGGTTTCATGTTTACCAGTTCTACAAGGTCCCCCAGTTCAACCACAACTTCCAAGAGAATCAACTCTACCGTAAAATCTCTCTCTACCTTAACTCCCTCCCCAACATTGAAGACTCCGACTTCACCAACCTCTTCTCCGGTTCCAAATCCAACGACATCTTCTTCCAACACGACAACAACCACTCCGTAGGCGACACCTTCCTCAGCGCCAAGGTTTCTTGGACTAATGAAAAGTCCGATGTCGATGGAATAAGGTCATACGTTTTGAGAATCAAGAAAACCGACAAGAGACGTGTTTTCCGACAGTACTTCCAGCACATACTGACCGTATCCGACGAGATTGAGCAACGGAACAAGGAGATCAAGCTGTACATGAATCTCGCAACAGAAAACGAACGGTGGAGATCGGTCCCCTTCACCCACCCGGCAACCTTGGACAGTGTCGTCATGGACACGGAGCTGAAAAACAAGGTAAGGTCTGATCTAGAACAATTCTTGAAGTCGAAGCAATACTACCATAGACTCGGTCGTGTCTGGAAACGAAGCTTCTTACTCTACGGTCCTTCCGGAACCGGCAAAACCAGCTTCGTCGCCGCCATGGCTAGGTTCCTGTCGTACGACGTGTACGACATCGACATGTCCAAAGTCGTCGATGACTCCGATCTGAAAATGCTCCTATTACAAACAAAGTCCAAGTCGTTAATTGTCGTGGAAGATCTCGACCGTTACTTGACGGAGAACACGACAAGATCGACGGCTGTGAGCCTCTCGGGGTTGCTGAACTTCATGGACGGAATCGTCTCCAGCTGCGGCGAGGAGAGAGTGTTGGTTTTCACGATGAACGGGAAAGACCACGTGGACGGGTTGGTCATGCGGCCGGGTCGGATCGACGTGCATATCCATTTCCCTCTCTGCGATTTCTCGGCGTTCAAAAGCTTGGCGAACACGTACTTAGGAGTCAAAGAGCACAAGCTGTTTCCTCAGGTGGAGGAGATTTTCCAGAGCGGCGGGAGTTTAAGTCCGGCGGTGATCGGAGAGATCATGATATCGAACCGGAGCTCGCCGAGTAGGGCATTGAAGTCGGTGATATCGGCGCTGCAGACGGACGTGGATAATAAGACGACGGTGAAGGTGGCGCAGGCGTTGACGAGTAGCGGGTCGGGTCGGTCGGAGGAGGGTGAGGGCGGGAGTACGGTGTTTTGTAGGGAGAGTGTTCACACGGTGAGGGAGTTTAGGAAGTTGTATGGGCTTTTGAGATTGGGGAGTAGGAGGAAGGAGGAGCCGCCGGTGCCGTTGCCGTTGGATAGAAGTTCGTCGGAAAAAGAAGGATCACGGCACGAAAGGATCATCGTGTAA

Protein Analysis

494

Amino Acids

56.57

Weight (kDa)

9.16

Isoelectric Point (pI)

51.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 28 - 118 5.4e-10 Domain associated at C-terminal with AAA
AAA PF00004 226 - 346 1.9e-16 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 347 - 412 8.2e-12 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 569, 923, 992
AccB1I GGYRCC 1 cut(s) 1414
AccBSI CCGCTC 1 cut(s) 1131
AccI GTMKAC 1 cut(s) 24
AccIII TCCGGA 1 cut(s) 692
AciI CCGC 9 cut(s) 720, 936, 1000, 1131, 1134, 1151, 1281, 1311, 1409
AclWI GGATC 3 cut(s) 1019, 1462, 1478
AcoI YGGCCR 1 cut(s) 1001
AcvI CACGTG 1 cut(s) 982
AdeI CACNNNGTG 1 cut(s) 1348
AfaI GTAC 6 cut(s) 434, 497, 743, 752, 1076, 1318
AfiI CCNNNNNNNGG 2 cut(s) 13, 729
AflIII ACRYGT 4 cut(s) 418, 747, 762, 1071
AgsI TTSAA 6 cut(s) 103, 166, 236, 625, 1057, 1204
AjiI CACGTC 4 cut(s) 419, 748, 1018, 1234
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
AluBI AGCT 8 cut(s) 493, 586, 672, 711, 933, 1062, 1099, 1185
AluI AGCT 8 cut(s) 493, 586, 672, 711, 933, 1062, 1099, 1185
Alw21I GWGCWC 2 cut(s) 1095, 1187
Alw26I GTCTC 2 cut(s) 409, 931
AlwI GGATC 3 cut(s) 1019, 1462, 1478
Ama87I CYCGRG 1 cut(s) 895
Aor13HI TCCGGA 1 cut(s) 692
AoxI GGCC 1 cut(s) 1001
ApeKI GCWGC 2 cut(s) 933, 1222
ArsI GACNNNNNNTTYG 2 cut(s) 806, 838
AspLEI GCGC 3 cut(s) 335, 1222, 1264
AspS9I GGNCC 4 cut(s) 4, 154, 535, 686
AsuC2I CCSGG 2 cut(s) 551, 1005
AsuHPI GGTGA 7 cut(s) 241, 535, 1165, 1222, 1264, 1316, 1360
AvaI CYCGRG 1 cut(s) 895
AvaII GGWCC 4 cut(s) 4, 154, 535, 686
AxyI CCTNAGG 1 cut(s) 1107
BanI GGYRCC 1 cut(s) 1414
BanII GRGCYC 1 cut(s) 1187
BarI GAAGNNNNNNTAC 2 cut(s) 623, 655
BbrPI CACGTG 1 cut(s) 982
BbsI GAAGAC 2 cut(s) 43, 243
Bbv12I GWGCWC 2 cut(s) 1095, 1187
BbvCI CCTCAGC 1 cut(s) 329
BbvI GCAGC 2 cut(s) 920, 1209
BccI CCATC 1 cut(s) 365
BceAI ACGGC 4 cut(s) 897, 1402, 1408, 1475
BcgI CGANNNNNNTGC 2 cut(s) 1188, 1222
BciVI GTATCC 1 cut(s) 466
BcnI CCSGG 2 cut(s) 551, 1005
BcoDI GTCTC 2 cut(s) 409, 931
BfaI CTAG 2 cut(s) 611, 729
BfmI CTRYAG 1 cut(s) 1223
BfoI RGCGCY 2 cut(s) 336, 1223
BfuI GTATCC 1 cut(s) 466
BglI GCCNNNNNGGC 1 cut(s) 725
BglII AGATCT 1 cut(s) 841
BisI GCNGC 7 cut(s) 720, 934, 937, 1001, 1132, 1223, 1409
BlsI GCNGC 7 cut(s) 721, 935, 938, 1002, 1133, 1224, 1410
BmcAI AGTACT 1 cut(s) 434
Bme1390I CCNGG 2 cut(s) 551, 1005
Bme18I GGWCC 4 cut(s) 4, 154, 535, 686
BmeT110I CYCGRG 1 cut(s) 895
BmgBI CACGTC 4 cut(s) 419, 748, 1018, 1234
BmgT120I GGNCC 4 cut(s) 4, 154, 535, 686
BmiI GGNNCC 7 cut(s) 156, 268, 537, 697, 734, 1407, 1416
BmrFI CCNGG 2 cut(s) 551, 1005
BmrI ACTGGG 1 cut(s) 154
BmuI ACTGGG 1 cut(s) 154
BpiI GAAGAC 2 cut(s) 43, 243
BpmI CTGGAG 1 cut(s) 913
Bpu10I CCTNAGC 1 cut(s) 329
BpuMI CCSGG 2 cut(s) 551, 1005
BsaAI YACGTR 2 cut(s) 982, 1074
BsaJI CCNNGG 3 cut(s) 336, 558, 723
BsaWI WCCGGW 4 cut(s) 6, 263, 692, 1179
Bsc4I CCNNNNNNNGG 2 cut(s) 13, 729
Bse118I RCCGGY 2 cut(s) 698, 1411
Bse1I ACTGG 2 cut(s) 142, 160
Bse21I CCTNAGG 1 cut(s) 1107
BseAI TCCGGA 1 cut(s) 692
BseDI CCNNGG 3 cut(s) 336, 558, 723
BseGI GGATG 1 cut(s) 30
BseLI CCNNNNNNNGG 2 cut(s) 13, 729
BseMII CTCAG 2 cut(s) 343, 1121
BseNI ACTGG 2 cut(s) 142, 160
BseRI GAGGAG 4 cut(s) 956, 1130, 1313, 1418
BseX3I CGGCCG 1 cut(s) 1001
BseXI GCAGC 2 cut(s) 920, 1209
Bsh1285I CGRYCG 4 cut(s) 655, 850, 1004, 1295
BshFI GGCC 1 cut(s) 1003
BshNI GGYRCC 1 cut(s) 1414
BsiEI CGRYCG 4 cut(s) 655, 850, 1004, 1295
BsiHKAI GWGCWC 2 cut(s) 1095, 1187
BsiHKCI CYCGRG 1 cut(s) 895
BsiSI CCGG 9 cut(s) 7, 264, 551, 693, 699, 1004, 1148, 1180, 1412
BsiWI CGTACG 1 cut(s) 741
BslFI GGGAC 2 cut(s) 140, 521
BslI CCNNNNNNNGG 2 cut(s) 13, 729
BsmAI GTCTC 2 cut(s) 409, 931
BsmBI CGTCTC 2 cut(s) 409, 931
BsmFI GGGAC 2 cut(s) 140, 521
BsnI GGCC 1 cut(s) 1003
BsoBI CYCGRG 1 cut(s) 895
Bsp1286I GDGCHC 2 cut(s) 1095, 1187
Bsp13I TCCGGA 1 cut(s) 692
Bsp1407I TGTACA 1 cut(s) 495
Bsp19I CCATGG 1 cut(s) 723
BspACI CCGC 9 cut(s) 720, 936, 1000, 1131, 1134, 1151, 1281, 1311, 1409
BspANI GGCC 1 cut(s) 1003
BspCNI CTCAG 2 cut(s) 342, 1120
BspEI TCCGGA 1 cut(s) 692
BspHI TCATGA 1 cut(s) 1167
BspLI GGNNCC 7 cut(s) 156, 268, 537, 697, 734, 1407, 1416
BspMAI CTGCAG 1 cut(s) 1227
BspPI GGATC 3 cut(s) 1019, 1462, 1478
BspT107I GGYRCC 1 cut(s) 1414
BsrBI CCGCTC 1 cut(s) 1131
BsrFI RCCGGY 2 cut(s) 698, 1411
BsrGI TGTACA 1 cut(s) 495
BsrI ACTGG 2 cut(s) 142, 160
BssAI RCCGGY 2 cut(s) 698, 1411
BssECI CCNNGG 3 cut(s) 336, 558, 723
BssT1I CCWWGG 3 cut(s) 336, 558, 723
Bst6I CTCTTC 2 cut(s) 41, 263
BstAUI TGTACA 1 cut(s) 495
BstBAI YACGTR 2 cut(s) 982, 1074
BstC8I GCNNGC 2 cut(s) 1187, 1266
BstDEI CTNAG 4 cut(s) 62, 329, 1078, 1107
BstDSI CCRYGG 1 cut(s) 723
BstF5I GGATG 1 cut(s) 30
BstH2I RGCGCY 2 cut(s) 336, 1223
BstHHI GCGC 3 cut(s) 335, 1222, 1264
BstMAI GTCTC 2 cut(s) 409, 931
BstMCI CGRYCG 4 cut(s) 655, 850, 1004, 1295
BstMWI GCNNNNNNNGC 4 cut(s) 94, 708, 725, 1414
BstNSI RCATGY 2 cut(s) 97, 766
BstSCI CCNGG 2 cut(s) 549, 1003
BstSFI CTRYAG 1 cut(s) 1223
BstV1I GCAGC 2 cut(s) 920, 1209
BstV2I GAAGAC 2 cut(s) 43, 243
BstX2I RGATCY 1 cut(s) 841
BstYI RGATCY 1 cut(s) 841
BstZI CGGCCG 1 cut(s) 1001
Bsu36I CCTNAGG 1 cut(s) 1107
BsuI GTATCC 1 cut(s) 466
BsuRI GGCC 1 cut(s) 1003
BtgI CCRYGG 1 cut(s) 723
BtrI CACGTC 4 cut(s) 419, 748, 1018, 1234
BtsCI GGATG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 571
Cac8I GCNNGC 2 cut(s) 1187, 1266
CciI TCATGA 1 cut(s) 1167
CfoI GCGC 3 cut(s) 335, 1222, 1264
Cfr10I RCCGGY 2 cut(s) 698, 1411
Cfr13I GGNCC 4 cut(s) 4, 154, 535, 686
Csp6I GTAC 6 cut(s) 433, 496, 742, 751, 1075, 1317
CviQI GTAC 6 cut(s) 433, 496, 742, 751, 1075, 1317
DdeI CTNAG 4 cut(s) 62, 329, 1078, 1107
DraIII CACNNNGTG 1 cut(s) 1348
DrdI GACNNNNNNGTC 3 cut(s) 569, 923, 992
DseDI GACNNNNNNGTC 3 cut(s) 569, 923, 992
EaeI YGGCCR 1 cut(s) 1001
EagI CGGCCG 1 cut(s) 1001
Eam1104I CTCTTC 2 cut(s) 41, 263
EarI CTCTTC 2 cut(s) 41, 263
Ecl136II GAGCTC 1 cut(s) 1185
EclXI CGGCCG 1 cut(s) 1001
Eco130I CCWWGG 3 cut(s) 336, 558, 723
Eco24I GRGCYC 1 cut(s) 1187
Eco32I GATATC 2 cut(s) 1173, 1215
Eco47I GGWCC 4 cut(s) 4, 154, 535, 686
Eco52I CGGCCG 1 cut(s) 1001
Eco53kI GAGCTC 1 cut(s) 1185
Eco72I CACGTG 1 cut(s) 982
Eco81I CCTNAGG 1 cut(s) 1107
Eco88I CYCGRG 1 cut(s) 895
EcoICRI GAGCTC 1 cut(s) 1185
EcoO109I RGGNCCY 1 cut(s) 154
EcoRV GATATC 2 cut(s) 1173, 1215
EcoT14I CCWWGG 3 cut(s) 336, 558, 723
EcoT38I GRGCYC 1 cut(s) 1187
ErhI CCWWGG 3 cut(s) 336, 558, 723
Esp3I CGTCTC 2 cut(s) 409, 931
FaqI GGGAC 2 cut(s) 140, 521
FauI CCCGC 3 cut(s) 1127, 1274, 1304
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 7 cut(s) 720, 934, 937, 1001, 1132, 1223, 1409
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 1187
Fsp4HI GCNGC 7 cut(s) 720, 934, 937, 1001, 1132, 1223, 1409
FspBI CTAG 2 cut(s) 611, 729
GlaI GCGC 3 cut(s) 334, 1221, 1263
GluI GCNGC 7 cut(s) 720, 934, 937, 1001, 1132, 1223, 1409
GsuI CTGGAG 1 cut(s) 913
HaeII RGCGCY 2 cut(s) 336, 1223
HaeIII GGCC 1 cut(s) 1003
HapII CCGG 9 cut(s) 7, 264, 551, 693, 699, 1004, 1148, 1180, 1412
HhaI GCGC 3 cut(s) 335, 1222, 1264
Hin6I GCGC 3 cut(s) 333, 1220, 1262
HinP1I GCGC 3 cut(s) 333, 1220, 1262
HincII GTYRAC 1 cut(s) 1272
HindII GTYRAC 1 cut(s) 1272
HindIII AAGCTT 2 cut(s) 670, 1060
HinfI GANTC 8 cut(s) 184, 239, 396, 502, 648, 782, 921, 1083
HpaII CCGG 9 cut(s) 7, 264, 551, 693, 699, 1004, 1148, 1180, 1412
HphI GGTGA 7 cut(s) 241, 535, 1165, 1222, 1264, 1316, 1360
Hpy166II GTNNAC 6 cut(s) 25, 139, 751, 985, 1272, 1342
Hpy8I GTNNAC 6 cut(s) 25, 139, 751, 985, 1272, 1342
Hpy99I CGWCG 8 cut(s) 464, 719, 749, 779, 883, 1019, 1252, 1444
HpyAV CCTTC 6 cut(s) 334, 550, 699, 1249, 1393, 1445
HpyCH4IV ACGT 7 cut(s) 387, 418, 747, 981, 1017, 1073, 1233
HpyCH4V TGCA 2 cut(s) 1021, 1225
HpyF10VI GCNNNNNNNGC 4 cut(s) 94, 708, 725, 1414
HpyF3I CTNAG 4 cut(s) 62, 329, 1078, 1107
HpySE526I ACGT 7 cut(s) 387, 418, 747, 981, 1017, 1073, 1233
HspAI GCGC 3 cut(s) 333, 1220, 1262
Kpn2I TCCGGA 1 cut(s) 692
LmnI GCTCC 4 cut(s) 583, 804, 1182, 1405
Lsp1109I GCAGC 2 cut(s) 920, 1209
MaeI CTAG 2 cut(s) 611, 729
MaeII ACGT 7 cut(s) 387, 418, 747, 981, 1017, 1073, 1233
MaeIII GTNAC 1 cut(s) 851
MbiI CCGCTC 1 cut(s) 1131
MboII GAAGA 7 cut(s) 28, 43, 248, 250, 277, 280, 851
MflI RGATCY 1 cut(s) 841
MhlI GDGCHC 2 cut(s) 1095, 1187
MluCI AATT 2 cut(s) 617, 828
MlyI GAGTC 4 cut(s) 233, 642, 776, 1092
MmeI TCCRAC 9 cut(s) 267, 300, 316, 451, 483, 989, 1275, 1407, 1422
MroI TCCGGA 1 cut(s) 692
MseI TTAA 4 cut(s) 119, 216, 827, 1142
MslI CAYNNNNRTG 1 cut(s) 761
MspA1I CMGCKG 1 cut(s) 933
MspI CCGG 9 cut(s) 7, 264, 551, 693, 699, 1004, 1148, 1180, 1412
MspR9I CCNGG 2 cut(s) 551, 1005
MwoI GCNNNNNNNGC 4 cut(s) 94, 708, 725, 1414
NciI CCSGG 2 cut(s) 551, 1005
NcoI CCATGG 1 cut(s) 723
NlaIV GGNNCC 7 cut(s) 156, 268, 537, 697, 734, 1407, 1416
NmeAIII GCCGAG 2 cut(s) 1028, 1215
NspI RCATGY 2 cut(s) 97, 766
PagI TCATGA 1 cut(s) 1167
PciI ACATGT 1 cut(s) 762
PcsI WCGNNNNNNNCGW 5 cut(s) 424, 750, 783, 866, 875
PfeI GAWTC 4 cut(s) 184, 396, 502, 921
Pfl23II CGTACG 1 cut(s) 741
PflFI GACNNNGTC 2 cut(s) 566, 651
PkrI GCNGC 7 cut(s) 721, 935, 938, 1002, 1133, 1224, 1410
PleI GAGTC 4 cut(s) 233, 642, 776, 1091
PmaCI CACGTG 1 cut(s) 982
PmlI CACGTG 1 cut(s) 982
PpsI GAGTC 4 cut(s) 233, 642, 776, 1091
Ppu21I YACGTR 2 cut(s) 982, 1074
PpuMI RGGWCCY 1 cut(s) 154
PscI ACATGT 1 cut(s) 762
Psp124BI GAGCTC 1 cut(s) 1187
Psp5II RGGWCCY 1 cut(s) 154
PspCI CACGTG 1 cut(s) 982
PspLI CGTACG 1 cut(s) 741
PspN4I GGNNCC 7 cut(s) 156, 268, 537, 697, 734, 1407, 1416
PspPI GGNCC 4 cut(s) 4, 154, 535, 686
PspPPI RGGWCCY 1 cut(s) 154
PstI CTGCAG 1 cut(s) 1227
PsuI RGATCY 1 cut(s) 841
PsyI GACNNNGTC 2 cut(s) 566, 651
PvuII CAGCTG 1 cut(s) 933
RsaI GTAC 6 cut(s) 434, 497, 743, 752, 1076, 1318
RsaNI GTAC 6 cut(s) 433, 496, 742, 751, 1075, 1317
RseI CAYNNNNRTG 1 cut(s) 761
SacI GAGCTC 1 cut(s) 1187
SaqAI TTAA 4 cut(s) 119, 216, 827, 1142
SatI GCNGC 7 cut(s) 720, 934, 937, 1001, 1132, 1223, 1409
Sau96I GGNCC 4 cut(s) 4, 154, 535, 686
ScaI AGTACT 1 cut(s) 434
SchI GAGTC 4 cut(s) 233, 642, 776, 1092
ScrFI CCNGG 2 cut(s) 551, 1005
SduI GDGCHC 2 cut(s) 1095, 1187
SfcI CTRYAG 1 cut(s) 1223
SgrAI CRCCGGYG 1 cut(s) 1411
SinI GGWCC 4 cut(s) 4, 154, 535, 686
SmiMI CAYNNNNRTG 1 cut(s) 761
Sse9I AATT 2 cut(s) 617, 828
SsiI CCGC 9 cut(s) 720, 936, 1000, 1131, 1134, 1151, 1281, 1311, 1409
SspMI CTAG 2 cut(s) 611, 729
SstI GAGCTC 1 cut(s) 1187
StyD4I CCNGG 2 cut(s) 549, 1003
StyI CCWWGG 3 cut(s) 336, 558, 723
TaiI ACGT 7 cut(s) 390, 421, 750, 984, 1020, 1076, 1236
TaqI TCGA 9 cut(s) 123, 369, 629, 759, 777, 846, 878, 1014, 1175
TaqII GACCGA 3 cut(s) 523, 641, 1281
TasI AATT 2 cut(s) 617, 828
TatI WGTACW 2 cut(s) 432, 495
TauI GCSGC 5 cut(s) 722, 939, 1003, 1134, 1411
TfiI GAWTC 4 cut(s) 184, 396, 502, 921
Tru1I TTAA 4 cut(s) 119, 216, 827, 1142
Tru9I TTAA 4 cut(s) 119, 216, 827, 1142
TscAI CASTG 1 cut(s) 571
TseI GCWGC 2 cut(s) 933, 1222
TspDTI ATGAA 6 cut(s) 19, 122, 369, 515, 901, 980
TspGWI ACGGA 6 cut(s) 301, 490, 596, 875, 933, 1244
TspRI CASTG 1 cut(s) 571
Tth111I GACNNNGTC 2 cut(s) 566, 651
VpaK11BI GGWCC 4 cut(s) 4, 154, 535, 686
XbaI TCTAGA 1 cut(s) 610
XceI RCATGY 2 cut(s) 97, 766
XmiI GTMKAC 1 cut(s) 24
XspI CTAG 2 cut(s) 611, 729
ZrmI AGTACT 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.