Rmu_sc0003481.1_g000013

Domain associated at C-terminal with AAA

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003481.1
Physical Location & Seq
Reverse (-)
41105 .. 42586
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003481.1_g000013.1.cds

Sequence Viewer

Length: 1482 bp
atgattctttccaacccattctttctgctagtgttggcggtctgtatattcgtggcggttcgcgtgcttctgtacaaaacagggttggtttatattgtgaagaaatggtggcgggttgtggaggactgcttccatgtctaccagtcgttcaaagtcccggaattcaacgaaagtatgcaggagaatcagctctactgcaaggtcactgtttatctcaactcactgacctccattgaggactccgatttcaccaatctcgtcaccggaaaaaagcccaacgagatcgtgctccagctcgaccccaaccagaccatcgaagacgactttctcggggccaaggtcacgtggcagagcgaagccagcaggggtggttgcagtaattgccggaatttggtgttgaaggttcggaaagccgataagcggcggattctgcggccgtatttgcagcacatccacgtcgtcgccgacgagctggaccagcggaagcgagatttgcggctgtacatgaacgtggacgacgactccgccgcggccggcgacgacttccgcaacgcgcggtggagggccgtgccgttcacgcacccatctacgctggagacgattgccatggaagccgacctcaaatcgaagatcaagtccgatttggagtcgtttctcaaagccaagcagtactacaaccgactcggccgcgtctggaagcgaagcttcttgctttacggcccctccggcaccgggaaatccagcttcgtcgccgccatggccaatttcctcggctacgacgtctacgatctcgacctctctagggttaaagacgactcggagttgaagatgcttcttttacagaccacgagcaagtcggtgatcctcatcgaggacctggatcggttcttcgccgagaaatcgacggcggtcagcttctccggcatatcgaacttcatggacggcttgctcaactcgtgctgcgccgaagagagagtcatggtgttcacgatgaactcgaaggaccaggtcgacccgaatttcctccgaccgggtcggatcgacgtccacatccattttccgttgtgtgatttcacggcgtttcggaacctagcgacgagctatttgggggtgaaggagcacaagctgttcccccaggtggaggagattttccaatccgggtcgagtctgagcccggccgagatcggcgagctcatgatcgcgaaccggaactcgccgagtcgggcgatcaagtcggtcatcacggcgttgcaaaccgacggtgatgggagggggccggggaagatcggacggccgccgaggtggttcgaaagcgggtcgagaaagtccgggggggacgagtcgggcgaacccggagttgtgttatgtggggaaggtgtgagtacggttagggattttagaaagctttacgggtttttgaggatgagaggcagcaagaattctcagtcgttcgatgcggggtcggagcagtcggcgggctaa

Protein Analysis

493

Amino Acids

55.54

Weight (kDa)

8.24

Isoelectric Point (pI)

44.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 783, 1047
AccB1I GGYRCC 1 cut(s) 728
AccI GTMKAC 3 cut(s) 138, 783, 1011
AccII CGCG 6 cut(s) 63, 530, 554, 556, 690, 1202
AclWI GGATC 3 cut(s) 856, 888, 1046
AcoI YGGCCR 6 cut(s) 434, 531, 685, 759, 1176, 1292
AcsI RAATTY 4 cut(s) 161, 388, 1018, 1438
AcvI CACGTG 1 cut(s) 345
AcyI GRCGYC 2 cut(s) 780, 1044
AfaI GTAC 4 cut(s) 74, 503, 671, 1384
AfiI CCNNNNNNNGG 8 cut(s) 391, 420, 732, 802, 871, 1030, 1138, 1141
AgsI TTSAA 4 cut(s) 151, 166, 400, 826
AjiI CACGTC 1 cut(s) 457
AjnI CCWGG 3 cut(s) 876, 1005, 1134
Alw21I GWGCWC 3 cut(s) 291, 1122, 1194
Alw26I GTCTC 1 cut(s) 590
AlwI GGATC 3 cut(s) 856, 888, 1046
Ama87I CYCGRG 1 cut(s) 329
ApeKI GCWGC 3 cut(s) 445, 960, 1431
ApoI RAATTY 4 cut(s) 161, 388, 1018, 1438
ArsI GACNNNNNNTTYG 6 cut(s) 620, 652, 960, 992, 1087, 1119
AspLEI GCGC 2 cut(s) 556, 965
AspS9I GGNCC 7 cut(s) 333, 475, 564, 719, 874, 1003, 1274
AsuC2I CCSGG 8 cut(s) 158, 733, 1032, 1159, 1175, 1278, 1330, 1353
AsuHPI GGTGA 5 cut(s) 241, 253, 871, 1123, 1274
AsuII TTCGAA 1 cut(s) 1308
AvaI CYCGRG 1 cut(s) 329
AvaII GGWCC 3 cut(s) 475, 874, 1003
BalI TGGCCA 1 cut(s) 761
BanI GGYRCC 1 cut(s) 728
BanII GRGCYC 2 cut(s) 1175, 1194
BauI CACGAG 2 cut(s) 847, 955
BbrPI CACGTG 1 cut(s) 345
BbsI GAAGAC 1 cut(s) 324
Bbv12I GWGCWC 3 cut(s) 291, 1122, 1194
BbvI GCAGC 3 cut(s) 457, 947, 1443
BccI CCATC 3 cut(s) 320, 592, 1259
BceAI ACGGC 9 cut(s) 421, 551, 556, 733, 921, 958, 1092, 1260, 1307
BciT130I CCWGG 3 cut(s) 878, 1007, 1136
BcnI CCSGG 8 cut(s) 158, 733, 1032, 1159, 1175, 1278, 1330, 1353
BcoDI GTCTC 1 cut(s) 590
BfaI CTAG 3 cut(s) 29, 801, 1091
BglI GCCNNNNNGGC 2 cut(s) 726, 758
BmcAI AGTACT 1 cut(s) 671
Bme18I GGWCC 3 cut(s) 475, 874, 1003
BmeT110I CYCGRG 1 cut(s) 329
BmgBI CACGTC 1 cut(s) 457
BmgT120I GGNCC 7 cut(s) 333, 475, 564, 719, 874, 1003, 1274
BmiI GGNNCC 5 cut(s) 334, 721, 730, 1088, 1275
BmsI GCATC 2 cut(s) 819, 1444
BoxI GACNNNNGTC 1 cut(s) 908
BpiI GAAGAC 1 cut(s) 324
BpmI CTGGAG 2 cut(s) 275, 614
Bpu14I TTCGAA 1 cut(s) 1308
BpuMI CCSGG 8 cut(s) 158, 733, 1032, 1159, 1175, 1278, 1330, 1353
BsaAI YACGTR 1 cut(s) 345
BsaBI GATNNNNATC 1 cut(s) 866
BsaHI GRCGYC 2 cut(s) 780, 1044
BsaJI CCNNGG 9 cut(s) 336, 528, 606, 756, 769, 1134, 1277, 1298, 1329
BsaWI WCCGGW 2 cut(s) 263, 1206
BsaXI ACNNNNNCTCC 4 cut(s) 506, 536, 707, 737
Bsc4I CCNNNNNNNGG 8 cut(s) 391, 420, 732, 802, 871, 1030, 1138, 1141
Bse118I RCCGGY 1 cut(s) 533
Bse1I ACTGG 1 cut(s) 142
Bse8I GATNNNNATC 1 cut(s) 866
BseBI CCWGG 3 cut(s) 878, 1007, 1136
BseDI CCNNGG 9 cut(s) 336, 528, 606, 756, 769, 1134, 1277, 1298, 1329
BseGI GGATG 3 cut(s) 450, 1050, 1428
BseJI GATNNNNATC 1 cut(s) 866
BseLI CCNNNNNNNGG 8 cut(s) 391, 420, 732, 802, 871, 1030, 1138, 1141
BseMII CTCAG 2 cut(s) 1160, 1457
BseNI ACTGG 1 cut(s) 142
BseRI GAGGAG 1 cut(s) 1157
BseX3I CGGCCG 5 cut(s) 434, 531, 685, 1176, 1292
BseXI GCAGC 3 cut(s) 457, 947, 1443
Bsh1236I CGCG 6 cut(s) 63, 530, 554, 556, 690, 1202
Bsh1285I CGRYCG 6 cut(s) 437, 534, 688, 1031, 1179, 1295
BshNI GGYRCC 1 cut(s) 728
BsiEI CGRYCG 6 cut(s) 437, 534, 688, 1031, 1179, 1295
BsiHKAI GWGCWC 3 cut(s) 291, 1122, 1194
BsiHKCI CYCGRG 1 cut(s) 329
BslFI GGGAC 2 cut(s) 140, 1349
BslI CCNNNNNNNGG 8 cut(s) 391, 420, 732, 802, 871, 1030, 1138, 1141
BsmAI GTCTC 1 cut(s) 590
BsmBI CGTCTC 1 cut(s) 590
BsmFI GGGAC 2 cut(s) 140, 1349
BsoBI CYCGRG 1 cut(s) 329
Bsp119I TTCGAA 1 cut(s) 1308
Bsp1286I GDGCHC 4 cut(s) 291, 1122, 1175, 1194
Bsp1407I TGTACA 2 cut(s) 72, 501
Bsp19I CCATGG 2 cut(s) 606, 756
Bsp68I TCGCGA 1 cut(s) 1202
BspCNI CTCAG 2 cut(s) 1161, 1456
BspFNI CGCG 6 cut(s) 63, 530, 554, 556, 690, 1202
BspHI TCATGA 1 cut(s) 1194
BspLI GGNNCC 5 cut(s) 334, 721, 730, 1088, 1275
BspPI GGATC 3 cut(s) 856, 888, 1046
BspT104I TTCGAA 1 cut(s) 1308
BspT107I GGYRCC 1 cut(s) 728
BsrFI RCCGGY 1 cut(s) 533
BsrGI TGTACA 2 cut(s) 72, 501
BsrI ACTGG 1 cut(s) 142
BssAI RCCGGY 1 cut(s) 533
BssECI CCNNGG 9 cut(s) 336, 528, 606, 756, 769, 1134, 1277, 1298, 1329
BssNI GRCGYC 2 cut(s) 780, 1044
BssSI CACGAG 2 cut(s) 847, 955
BssT1I CCWWGG 3 cut(s) 336, 606, 756
Bst2BI CACGAG 2 cut(s) 847, 955
Bst2UI CCWGG 3 cut(s) 878, 1007, 1136
Bst4CI ACNGT 3 cut(s) 208, 1262, 1387
Bst6I CTCTTC 1 cut(s) 963
BstACI GRCGYC 2 cut(s) 780, 1044
BstAPI GCANNNNNTGC 1 cut(s) 381
BstAUI TGTACA 2 cut(s) 72, 501
BstBAI YACGTR 1 cut(s) 345
BstBI TTCGAA 1 cut(s) 1308
BstC8I GCNNGC 6 cut(s) 65, 361, 535, 947, 1190, 1477
BstDEI CTNAG 2 cut(s) 1169, 1443
BstDSI CCRYGG 3 cut(s) 528, 606, 756
BstENI CCTNNNNNAGG 1 cut(s) 869
BstF5I GGATG 3 cut(s) 450, 1050, 1428
BstFNI CGCG 6 cut(s) 63, 530, 554, 556, 690, 1202
BstHHI GCGC 2 cut(s) 556, 965
BstMAI GTCTC 1 cut(s) 590
BstMCI CGRYCG 6 cut(s) 437, 534, 688, 1031, 1179, 1295
BstNI CCWGG 3 cut(s) 878, 1007, 1136
BstPAI GACNNNNGTC 1 cut(s) 908
BstUI CGCG 6 cut(s) 63, 530, 554, 556, 690, 1202
BstV1I GCAGC 3 cut(s) 457, 947, 1443
BstV2I GAAGAC 1 cut(s) 324
BstZI CGGCCG 5 cut(s) 434, 531, 685, 1176, 1292
BtgI CCRYGG 3 cut(s) 528, 606, 756
BtrI CACGTC 1 cut(s) 457
BtsCI GGATG 3 cut(s) 450, 1050, 1428
BtsIMutI CAGTG 2 cut(s) 204, 221
BtuMI TCGCGA 1 cut(s) 1202
Cac8I GCNNGC 6 cut(s) 65, 361, 535, 947, 1190, 1477
CciI TCATGA 1 cut(s) 1194
CfoI GCGC 2 cut(s) 556, 965
Cfr10I RCCGGY 1 cut(s) 533
Cfr13I GGNCC 7 cut(s) 333, 475, 564, 719, 874, 1003, 1274
Cfr42I CCGCGG 1 cut(s) 531
CseI GACGC 1 cut(s) 679
CsiI ACCWGGT 1 cut(s) 1005
Csp6I GTAC 4 cut(s) 73, 502, 670, 1383
CviAII CATG 7 cut(s) 134, 505, 607, 757, 937, 979, 1195
CviQI GTAC 4 cut(s) 73, 502, 670, 1383
DdeI CTNAG 2 cut(s) 1169, 1443
EaeI YGGCCR 6 cut(s) 434, 531, 685, 759, 1176, 1292
EagI CGGCCG 5 cut(s) 434, 531, 685, 1176, 1292
Eam1104I CTCTTC 1 cut(s) 963
EarI CTCTTC 1 cut(s) 963
EciI GGCGGA 2 cut(s) 439, 514
Ecl136II GAGCTC 1 cut(s) 1192
EclXI CGGCCG 5 cut(s) 434, 531, 685, 1176, 1292
Eco130I CCWWGG 3 cut(s) 336, 606, 756
Eco24I GRGCYC 2 cut(s) 1175, 1194
Eco47I GGWCC 3 cut(s) 475, 874, 1003
Eco52I CGGCCG 5 cut(s) 434, 531, 685, 1176, 1292
Eco53kI GAGCTC 1 cut(s) 1192
Eco72I CACGTG 1 cut(s) 345
Eco88I CYCGRG 1 cut(s) 329
EcoICRI GAGCTC 1 cut(s) 1192
EcoNI CCTNNNNNAGG 1 cut(s) 869
EcoO109I RGGNCCY 1 cut(s) 874
EcoRI GAATTC 2 cut(s) 161, 1438
EcoRII CCWGG 3 cut(s) 876, 1005, 1134
EcoT14I CCWWGG 3 cut(s) 336, 606, 756
EcoT38I GRGCYC 2 cut(s) 1175, 1194
ErhI CCWWGG 3 cut(s) 336, 606, 756
Esp3I CGTCTC 1 cut(s) 590
FaeI CATG 7 cut(s) 137, 508, 610, 760, 940, 982, 1198
FalI AAGNNNNNCTT 2 cut(s) 689, 721
FaqI GGGAC 2 cut(s) 140, 1349
FatI CATG 7 cut(s) 133, 504, 606, 756, 936, 978, 1194
FauI CCCGC 4 cut(s) 105, 1307, 1450, 1468
FblI GTMKAC 3 cut(s) 138, 783, 1011
FokI GGATG 3 cut(s) 437, 1037, 1435
FriOI GRGCYC 2 cut(s) 1175, 1194
FspBI CTAG 3 cut(s) 29, 801, 1091
GlaI GCGC 2 cut(s) 555, 964
GsuI CTGGAG 2 cut(s) 275, 614
HgaI GACGC 1 cut(s) 679
HhaI GCGC 2 cut(s) 556, 965
Hin1I GRCGYC 2 cut(s) 780, 1044
Hin1II CATG 7 cut(s) 137, 508, 610, 760, 940, 982, 1198
Hin6I GCGC 2 cut(s) 554, 963
HinP1I GCGC 2 cut(s) 554, 963
HincII GTYRAC 1 cut(s) 1012
HindII GTYRAC 1 cut(s) 1012
HindIII AAGCTT 2 cut(s) 703, 1403
HphI GGTGA 5 cut(s) 241, 253, 871, 1123, 1274
Hpy166II GTNNAC 7 cut(s) 139, 514, 576, 784, 987, 1012, 1048
Hpy188III TCNNGA 6 cut(s) 694, 791, 988, 1195, 1201, 1320
Hpy8I GTNNAC 7 cut(s) 139, 514, 576, 784, 987, 1012, 1048
HpyAV CCTTC 4 cut(s) 394, 994, 1108, 1367
HpyCH4III ACNGT 3 cut(s) 208, 1262, 1387
HpyCH4IV ACGT 5 cut(s) 344, 456, 510, 780, 1044
HpyCH4V TGCA 5 cut(s) 178, 198, 375, 445, 1252
HpyF3I CTNAG 2 cut(s) 1169, 1443
HpySE526I ACGT 5 cut(s) 344, 456, 510, 780, 1044
Hsp92I GRCGYC 2 cut(s) 780, 1044
Hsp92II CATG 7 cut(s) 137, 508, 610, 760, 940, 982, 1198
HspAI GCGC 2 cut(s) 554, 963
KroI GCCGGC 1 cut(s) 533
KroNI GCCGGC 1 cut(s) 535
KspI CCGCGG 1 cut(s) 531
LmnI GCTCC 3 cut(s) 294, 1117, 1465
Lsp1109I GCAGC 3 cut(s) 457, 947, 1443
LweI GCATC 2 cut(s) 819, 1444
MabI ACCWGGT 1 cut(s) 1005
MaeI CTAG 3 cut(s) 29, 801, 1091
MaeII ACGT 5 cut(s) 344, 456, 510, 780, 1044
MaeIII GTNAC 3 cut(s) 202, 259, 340
MboII GAAGA 7 cut(s) 112, 329, 640, 838, 880, 980, 1294
MhlI GDGCHC 4 cut(s) 291, 1122, 1175, 1194
MlsI TGGCCA 1 cut(s) 761
MluCI AATT 6 cut(s) 161, 379, 388, 763, 1018, 1438
MluNI TGGCCA 1 cut(s) 761
MlyI GAGTC 9 cut(s) 233, 515, 656, 675, 809, 984, 1174, 1228, 1349
MmeI TCCRAC 4 cut(s) 36, 1016, 1051, 1443
Mox20I TGGCCA 1 cut(s) 761
MroNI GCCGGC 1 cut(s) 533
MscI TGGCCA 1 cut(s) 761
MseI TTAA 1 cut(s) 807
MslI CAYNNNNRTG 1 cut(s) 509
Msp20I TGGCCA 1 cut(s) 761
MspA1I CMGCKG 2 cut(s) 481, 530
MvaI CCWGG 3 cut(s) 878, 1007, 1136
MvnI CGCG 6 cut(s) 63, 530, 554, 556, 690, 1202
NaeI GCCGGC 1 cut(s) 535
NciI CCSGG 8 cut(s) 158, 733, 1032, 1159, 1175, 1278, 1330, 1353
NcoI CCATGG 2 cut(s) 606, 756
NgoMIV GCCGGC 1 cut(s) 533
NlaIII CATG 7 cut(s) 137, 508, 610, 760, 940, 982, 1198
NlaIV GGNNCC 5 cut(s) 334, 721, 730, 1088, 1275
NmeAIII GCCGAG 6 cut(s) 663, 750, 919, 1204, 1242, 1323
NmuCI GTSAC 3 cut(s) 202, 259, 340
NruI TCGCGA 1 cut(s) 1202
NspV TTCGAA 1 cut(s) 1308
PagI TCATGA 1 cut(s) 1194
PcsI WCGNNNNNNNCGW 8 cut(s) 462, 465, 516, 596, 777, 783, 995, 1344
PdiI GCCGGC 1 cut(s) 535
PfeI GAWTC 3 cut(s) 4, 184, 427
PflFI GACNNNGTC 2 cut(s) 1007, 1032
PfoI TCCNGGA 1 cut(s) 156
PleI GAGTC 9 cut(s) 233, 515, 655, 675, 809, 983, 1173, 1227, 1348
PmaCI CACGTG 1 cut(s) 345
PmlI CACGTG 1 cut(s) 345
PpsI GAGTC 9 cut(s) 233, 515, 655, 675, 809, 983, 1173, 1227, 1348
Ppu21I YACGTR 1 cut(s) 345
PpuMI RGGWCCY 1 cut(s) 874
PshAI GACNNNNGTC 1 cut(s) 908
Psp124BI GAGCTC 1 cut(s) 1194
Psp5II RGGWCCY 1 cut(s) 874
Psp6I CCWGG 3 cut(s) 876, 1005, 1134
PspCI CACGTG 1 cut(s) 345
PspGI CCWGG 3 cut(s) 876, 1005, 1134
PspN4I GGNNCC 5 cut(s) 334, 721, 730, 1088, 1275
PspPI GGNCC 7 cut(s) 333, 475, 564, 719, 874, 1003, 1274
PspPPI RGGWCCY 1 cut(s) 874
PsyI GACNNNGTC 2 cut(s) 1007, 1032
RruI TCGCGA 1 cut(s) 1202
RsaI GTAC 4 cut(s) 74, 503, 671, 1384
RsaNI GTAC 4 cut(s) 73, 502, 670, 1383
RseI CAYNNNNRTG 1 cut(s) 509
SacI GAGCTC 1 cut(s) 1194
SacII CCGCGG 1 cut(s) 531
SalI GTCGAC 1 cut(s) 1010
SaqAI TTAA 1 cut(s) 807
Sau96I GGNCC 7 cut(s) 333, 475, 564, 719, 874, 1003, 1274
ScaI AGTACT 1 cut(s) 671
SchI GAGTC 9 cut(s) 233, 515, 656, 675, 809, 984, 1174, 1228, 1349
SduI GDGCHC 4 cut(s) 291, 1122, 1175, 1194
SexAI ACCWGGT 1 cut(s) 1005
SfaNI GCATC 2 cut(s) 819, 1444
Sfr303I CCGCGG 1 cut(s) 531
SfuI TTCGAA 1 cut(s) 1308
SgrBI CCGCGG 1 cut(s) 531
SinI GGWCC 3 cut(s) 475, 874, 1003
SmiMI CAYNNNNRTG 1 cut(s) 509
Sse9I AATT 6 cut(s) 161, 379, 388, 763, 1018, 1438
SspMI CTAG 3 cut(s) 29, 801, 1091
SstI GAGCTC 1 cut(s) 1194
StyI CCWWGG 3 cut(s) 336, 606, 756
TaaI ACNGT 3 cut(s) 208, 1262, 1387
TaiI ACGT 5 cut(s) 347, 459, 513, 783, 1047
TaqII GACCGA 1 cut(s) 1225
TasI AATT 6 cut(s) 161, 379, 388, 763, 1018, 1438
TatI WGTACW 3 cut(s) 72, 501, 669
TauI GCSGC 8 cut(s) 424, 436, 499, 530, 533, 690, 755, 1297
TfiI GAWTC 3 cut(s) 4, 184, 427
Tru1I TTAA 1 cut(s) 807
Tru9I TTAA 1 cut(s) 807
TscAI CASTG 2 cut(s) 211, 228
TseFI GTSAC 3 cut(s) 202, 259, 340
TseI GCWGC 3 cut(s) 445, 960, 1431
Tsp45I GTSAC 3 cut(s) 202, 259, 340
TspDTI ATGAA 3 cut(s) 521, 925, 1007
TspGWI ACGGA 1 cut(s) 1050
TspRI CASTG 2 cut(s) 211, 228
Tth111I GACNNNGTC 2 cut(s) 1007, 1032
VpaK11BI GGWCC 3 cut(s) 475, 874, 1003
XagI CCTNNNNNAGG 1 cut(s) 869
XapI RAATTY 4 cut(s) 161, 388, 1018, 1438
XmiI GTMKAC 3 cut(s) 138, 783, 1011
XspI CTAG 3 cut(s) 29, 801, 1091
ZraI GACGTC 2 cut(s) 781, 1045
ZrmI AGTACT 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.