Domain associated at C-terminal with AAA
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 783, 1047 |
| AccB1I | GGYRCC | 1 cut(s) | 728 |
| AccI | GTMKAC | 3 cut(s) | 138, 783, 1011 |
| AccII | CGCG | 6 cut(s) | 63, 530, 554, 556, 690, 1202 |
| AclWI | GGATC | 3 cut(s) | 856, 888, 1046 |
| AcoI | YGGCCR | 6 cut(s) | 434, 531, 685, 759, 1176, 1292 |
| AcsI | RAATTY | 4 cut(s) | 161, 388, 1018, 1438 |
| AcvI | CACGTG | 1 cut(s) | 345 |
| AcyI | GRCGYC | 2 cut(s) | 780, 1044 |
| AfaI | GTAC | 4 cut(s) | 74, 503, 671, 1384 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 391, 420, 732, 802, 871, 1030, 1138, 1141 |
| AgsI | TTSAA | 4 cut(s) | 151, 166, 400, 826 |
| AjiI | CACGTC | 1 cut(s) | 457 |
| AjnI | CCWGG | 3 cut(s) | 876, 1005, 1134 |
| Alw21I | GWGCWC | 3 cut(s) | 291, 1122, 1194 |
| Alw26I | GTCTC | 1 cut(s) | 590 |
| AlwI | GGATC | 3 cut(s) | 856, 888, 1046 |
| Ama87I | CYCGRG | 1 cut(s) | 329 |
| ApeKI | GCWGC | 3 cut(s) | 445, 960, 1431 |
| ApoI | RAATTY | 4 cut(s) | 161, 388, 1018, 1438 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 620, 652, 960, 992, 1087, 1119 |
| AspLEI | GCGC | 2 cut(s) | 556, 965 |
| AspS9I | GGNCC | 7 cut(s) | 333, 475, 564, 719, 874, 1003, 1274 |
| AsuC2I | CCSGG | 8 cut(s) | 158, 733, 1032, 1159, 1175, 1278, 1330, 1353 |
| AsuHPI | GGTGA | 5 cut(s) | 241, 253, 871, 1123, 1274 |
| AsuII | TTCGAA | 1 cut(s) | 1308 |
| AvaI | CYCGRG | 1 cut(s) | 329 |
| AvaII | GGWCC | 3 cut(s) | 475, 874, 1003 |
| BalI | TGGCCA | 1 cut(s) | 761 |
| BanI | GGYRCC | 1 cut(s) | 728 |
| BanII | GRGCYC | 2 cut(s) | 1175, 1194 |
| BauI | CACGAG | 2 cut(s) | 847, 955 |
| BbrPI | CACGTG | 1 cut(s) | 345 |
| BbsI | GAAGAC | 1 cut(s) | 324 |
| Bbv12I | GWGCWC | 3 cut(s) | 291, 1122, 1194 |
| BbvI | GCAGC | 3 cut(s) | 457, 947, 1443 |
| BccI | CCATC | 3 cut(s) | 320, 592, 1259 |
| BceAI | ACGGC | 9 cut(s) | 421, 551, 556, 733, 921, 958, 1092, 1260, 1307 |
| BciT130I | CCWGG | 3 cut(s) | 878, 1007, 1136 |
| BcnI | CCSGG | 8 cut(s) | 158, 733, 1032, 1159, 1175, 1278, 1330, 1353 |
| BcoDI | GTCTC | 1 cut(s) | 590 |
| BfaI | CTAG | 3 cut(s) | 29, 801, 1091 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 726, 758 |
| BmcAI | AGTACT | 1 cut(s) | 671 |
| Bme18I | GGWCC | 3 cut(s) | 475, 874, 1003 |
| BmeT110I | CYCGRG | 1 cut(s) | 329 |
| BmgBI | CACGTC | 1 cut(s) | 457 |
| BmgT120I | GGNCC | 7 cut(s) | 333, 475, 564, 719, 874, 1003, 1274 |
| BmiI | GGNNCC | 5 cut(s) | 334, 721, 730, 1088, 1275 |
| BmsI | GCATC | 2 cut(s) | 819, 1444 |
| BoxI | GACNNNNGTC | 1 cut(s) | 908 |
| BpiI | GAAGAC | 1 cut(s) | 324 |
| BpmI | CTGGAG | 2 cut(s) | 275, 614 |
| Bpu14I | TTCGAA | 1 cut(s) | 1308 |
| BpuMI | CCSGG | 8 cut(s) | 158, 733, 1032, 1159, 1175, 1278, 1330, 1353 |
| BsaAI | YACGTR | 1 cut(s) | 345 |
| BsaBI | GATNNNNATC | 1 cut(s) | 866 |
| BsaHI | GRCGYC | 2 cut(s) | 780, 1044 |
| BsaJI | CCNNGG | 9 cut(s) | 336, 528, 606, 756, 769, 1134, 1277, 1298, 1329 |
| BsaWI | WCCGGW | 2 cut(s) | 263, 1206 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 506, 536, 707, 737 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 391, 420, 732, 802, 871, 1030, 1138, 1141 |
| Bse118I | RCCGGY | 1 cut(s) | 533 |
| Bse1I | ACTGG | 1 cut(s) | 142 |
| Bse8I | GATNNNNATC | 1 cut(s) | 866 |
| BseBI | CCWGG | 3 cut(s) | 878, 1007, 1136 |
| BseDI | CCNNGG | 9 cut(s) | 336, 528, 606, 756, 769, 1134, 1277, 1298, 1329 |
| BseGI | GGATG | 3 cut(s) | 450, 1050, 1428 |
| BseJI | GATNNNNATC | 1 cut(s) | 866 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 391, 420, 732, 802, 871, 1030, 1138, 1141 |
| BseMII | CTCAG | 2 cut(s) | 1160, 1457 |
| BseNI | ACTGG | 1 cut(s) | 142 |
| BseRI | GAGGAG | 1 cut(s) | 1157 |
| BseX3I | CGGCCG | 5 cut(s) | 434, 531, 685, 1176, 1292 |
| BseXI | GCAGC | 3 cut(s) | 457, 947, 1443 |
| Bsh1236I | CGCG | 6 cut(s) | 63, 530, 554, 556, 690, 1202 |
| Bsh1285I | CGRYCG | 6 cut(s) | 437, 534, 688, 1031, 1179, 1295 |
| BshNI | GGYRCC | 1 cut(s) | 728 |
| BsiEI | CGRYCG | 6 cut(s) | 437, 534, 688, 1031, 1179, 1295 |
| BsiHKAI | GWGCWC | 3 cut(s) | 291, 1122, 1194 |
| BsiHKCI | CYCGRG | 1 cut(s) | 329 |
| BslFI | GGGAC | 2 cut(s) | 140, 1349 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 391, 420, 732, 802, 871, 1030, 1138, 1141 |
| BsmAI | GTCTC | 1 cut(s) | 590 |
| BsmBI | CGTCTC | 1 cut(s) | 590 |
| BsmFI | GGGAC | 2 cut(s) | 140, 1349 |
| BsoBI | CYCGRG | 1 cut(s) | 329 |
| Bsp119I | TTCGAA | 1 cut(s) | 1308 |
| Bsp1286I | GDGCHC | 4 cut(s) | 291, 1122, 1175, 1194 |
| Bsp1407I | TGTACA | 2 cut(s) | 72, 501 |
| Bsp19I | CCATGG | 2 cut(s) | 606, 756 |
| Bsp68I | TCGCGA | 1 cut(s) | 1202 |
| BspCNI | CTCAG | 2 cut(s) | 1161, 1456 |
| BspFNI | CGCG | 6 cut(s) | 63, 530, 554, 556, 690, 1202 |
| BspHI | TCATGA | 1 cut(s) | 1194 |
| BspLI | GGNNCC | 5 cut(s) | 334, 721, 730, 1088, 1275 |
| BspPI | GGATC | 3 cut(s) | 856, 888, 1046 |
| BspT104I | TTCGAA | 1 cut(s) | 1308 |
| BspT107I | GGYRCC | 1 cut(s) | 728 |
| BsrFI | RCCGGY | 1 cut(s) | 533 |
| BsrGI | TGTACA | 2 cut(s) | 72, 501 |
| BsrI | ACTGG | 1 cut(s) | 142 |
| BssAI | RCCGGY | 1 cut(s) | 533 |
| BssECI | CCNNGG | 9 cut(s) | 336, 528, 606, 756, 769, 1134, 1277, 1298, 1329 |
| BssNI | GRCGYC | 2 cut(s) | 780, 1044 |
| BssSI | CACGAG | 2 cut(s) | 847, 955 |
| BssT1I | CCWWGG | 3 cut(s) | 336, 606, 756 |
| Bst2BI | CACGAG | 2 cut(s) | 847, 955 |
| Bst2UI | CCWGG | 3 cut(s) | 878, 1007, 1136 |
| Bst4CI | ACNGT | 3 cut(s) | 208, 1262, 1387 |
| Bst6I | CTCTTC | 1 cut(s) | 963 |
| BstACI | GRCGYC | 2 cut(s) | 780, 1044 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 381 |
| BstAUI | TGTACA | 2 cut(s) | 72, 501 |
| BstBAI | YACGTR | 1 cut(s) | 345 |
| BstBI | TTCGAA | 1 cut(s) | 1308 |
| BstC8I | GCNNGC | 6 cut(s) | 65, 361, 535, 947, 1190, 1477 |
| BstDEI | CTNAG | 2 cut(s) | 1169, 1443 |
| BstDSI | CCRYGG | 3 cut(s) | 528, 606, 756 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 869 |
| BstF5I | GGATG | 3 cut(s) | 450, 1050, 1428 |
| BstFNI | CGCG | 6 cut(s) | 63, 530, 554, 556, 690, 1202 |
| BstHHI | GCGC | 2 cut(s) | 556, 965 |
| BstMAI | GTCTC | 1 cut(s) | 590 |
| BstMCI | CGRYCG | 6 cut(s) | 437, 534, 688, 1031, 1179, 1295 |
| BstNI | CCWGG | 3 cut(s) | 878, 1007, 1136 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 908 |
| BstUI | CGCG | 6 cut(s) | 63, 530, 554, 556, 690, 1202 |
| BstV1I | GCAGC | 3 cut(s) | 457, 947, 1443 |
| BstV2I | GAAGAC | 1 cut(s) | 324 |
| BstZI | CGGCCG | 5 cut(s) | 434, 531, 685, 1176, 1292 |
| BtgI | CCRYGG | 3 cut(s) | 528, 606, 756 |
| BtrI | CACGTC | 1 cut(s) | 457 |
| BtsCI | GGATG | 3 cut(s) | 450, 1050, 1428 |
| BtsIMutI | CAGTG | 2 cut(s) | 204, 221 |
| BtuMI | TCGCGA | 1 cut(s) | 1202 |
| Cac8I | GCNNGC | 6 cut(s) | 65, 361, 535, 947, 1190, 1477 |
| CciI | TCATGA | 1 cut(s) | 1194 |
| CfoI | GCGC | 2 cut(s) | 556, 965 |
| Cfr10I | RCCGGY | 1 cut(s) | 533 |
| Cfr13I | GGNCC | 7 cut(s) | 333, 475, 564, 719, 874, 1003, 1274 |
| Cfr42I | CCGCGG | 1 cut(s) | 531 |
| CseI | GACGC | 1 cut(s) | 679 |
| CsiI | ACCWGGT | 1 cut(s) | 1005 |
| Csp6I | GTAC | 4 cut(s) | 73, 502, 670, 1383 |
| CviAII | CATG | 7 cut(s) | 134, 505, 607, 757, 937, 979, 1195 |
| CviQI | GTAC | 4 cut(s) | 73, 502, 670, 1383 |
| DdeI | CTNAG | 2 cut(s) | 1169, 1443 |
| EaeI | YGGCCR | 6 cut(s) | 434, 531, 685, 759, 1176, 1292 |
| EagI | CGGCCG | 5 cut(s) | 434, 531, 685, 1176, 1292 |
| Eam1104I | CTCTTC | 1 cut(s) | 963 |
| EarI | CTCTTC | 1 cut(s) | 963 |
| EciI | GGCGGA | 2 cut(s) | 439, 514 |
| Ecl136II | GAGCTC | 1 cut(s) | 1192 |
| EclXI | CGGCCG | 5 cut(s) | 434, 531, 685, 1176, 1292 |
| Eco130I | CCWWGG | 3 cut(s) | 336, 606, 756 |
| Eco24I | GRGCYC | 2 cut(s) | 1175, 1194 |
| Eco47I | GGWCC | 3 cut(s) | 475, 874, 1003 |
| Eco52I | CGGCCG | 5 cut(s) | 434, 531, 685, 1176, 1292 |
| Eco53kI | GAGCTC | 1 cut(s) | 1192 |
| Eco72I | CACGTG | 1 cut(s) | 345 |
| Eco88I | CYCGRG | 1 cut(s) | 329 |
| EcoICRI | GAGCTC | 1 cut(s) | 1192 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 869 |
| EcoO109I | RGGNCCY | 1 cut(s) | 874 |
| EcoRI | GAATTC | 2 cut(s) | 161, 1438 |
| EcoRII | CCWGG | 3 cut(s) | 876, 1005, 1134 |
| EcoT14I | CCWWGG | 3 cut(s) | 336, 606, 756 |
| EcoT38I | GRGCYC | 2 cut(s) | 1175, 1194 |
| ErhI | CCWWGG | 3 cut(s) | 336, 606, 756 |
| Esp3I | CGTCTC | 1 cut(s) | 590 |
| FaeI | CATG | 7 cut(s) | 137, 508, 610, 760, 940, 982, 1198 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 689, 721 |
| FaqI | GGGAC | 2 cut(s) | 140, 1349 |
| FatI | CATG | 7 cut(s) | 133, 504, 606, 756, 936, 978, 1194 |
| FauI | CCCGC | 4 cut(s) | 105, 1307, 1450, 1468 |
| FblI | GTMKAC | 3 cut(s) | 138, 783, 1011 |
| FokI | GGATG | 3 cut(s) | 437, 1037, 1435 |
| FriOI | GRGCYC | 2 cut(s) | 1175, 1194 |
| FspBI | CTAG | 3 cut(s) | 29, 801, 1091 |
| GlaI | GCGC | 2 cut(s) | 555, 964 |
| GsuI | CTGGAG | 2 cut(s) | 275, 614 |
| HgaI | GACGC | 1 cut(s) | 679 |
| HhaI | GCGC | 2 cut(s) | 556, 965 |
| Hin1I | GRCGYC | 2 cut(s) | 780, 1044 |
| Hin1II | CATG | 7 cut(s) | 137, 508, 610, 760, 940, 982, 1198 |
| Hin6I | GCGC | 2 cut(s) | 554, 963 |
| HinP1I | GCGC | 2 cut(s) | 554, 963 |
| HincII | GTYRAC | 1 cut(s) | 1012 |
| HindII | GTYRAC | 1 cut(s) | 1012 |
| HindIII | AAGCTT | 2 cut(s) | 703, 1403 |
| HphI | GGTGA | 5 cut(s) | 241, 253, 871, 1123, 1274 |
| Hpy166II | GTNNAC | 7 cut(s) | 139, 514, 576, 784, 987, 1012, 1048 |
| Hpy188III | TCNNGA | 6 cut(s) | 694, 791, 988, 1195, 1201, 1320 |
| Hpy8I | GTNNAC | 7 cut(s) | 139, 514, 576, 784, 987, 1012, 1048 |
| HpyAV | CCTTC | 4 cut(s) | 394, 994, 1108, 1367 |
| HpyCH4III | ACNGT | 3 cut(s) | 208, 1262, 1387 |
| HpyCH4IV | ACGT | 5 cut(s) | 344, 456, 510, 780, 1044 |
| HpyCH4V | TGCA | 5 cut(s) | 178, 198, 375, 445, 1252 |
| HpyF3I | CTNAG | 2 cut(s) | 1169, 1443 |
| HpySE526I | ACGT | 5 cut(s) | 344, 456, 510, 780, 1044 |
| Hsp92I | GRCGYC | 2 cut(s) | 780, 1044 |
| Hsp92II | CATG | 7 cut(s) | 137, 508, 610, 760, 940, 982, 1198 |
| HspAI | GCGC | 2 cut(s) | 554, 963 |
| KroI | GCCGGC | 1 cut(s) | 533 |
| KroNI | GCCGGC | 1 cut(s) | 535 |
| KspI | CCGCGG | 1 cut(s) | 531 |
| LmnI | GCTCC | 3 cut(s) | 294, 1117, 1465 |
| Lsp1109I | GCAGC | 3 cut(s) | 457, 947, 1443 |
| LweI | GCATC | 2 cut(s) | 819, 1444 |
| MabI | ACCWGGT | 1 cut(s) | 1005 |
| MaeI | CTAG | 3 cut(s) | 29, 801, 1091 |
| MaeII | ACGT | 5 cut(s) | 344, 456, 510, 780, 1044 |
| MaeIII | GTNAC | 3 cut(s) | 202, 259, 340 |
| MboII | GAAGA | 7 cut(s) | 112, 329, 640, 838, 880, 980, 1294 |
| MhlI | GDGCHC | 4 cut(s) | 291, 1122, 1175, 1194 |
| MlsI | TGGCCA | 1 cut(s) | 761 |
| MluCI | AATT | 6 cut(s) | 161, 379, 388, 763, 1018, 1438 |
| MluNI | TGGCCA | 1 cut(s) | 761 |
| MlyI | GAGTC | 9 cut(s) | 233, 515, 656, 675, 809, 984, 1174, 1228, 1349 |
| MmeI | TCCRAC | 4 cut(s) | 36, 1016, 1051, 1443 |
| Mox20I | TGGCCA | 1 cut(s) | 761 |
| MroNI | GCCGGC | 1 cut(s) | 533 |
| MscI | TGGCCA | 1 cut(s) | 761 |
| MseI | TTAA | 1 cut(s) | 807 |
| MslI | CAYNNNNRTG | 1 cut(s) | 509 |
| Msp20I | TGGCCA | 1 cut(s) | 761 |
| MspA1I | CMGCKG | 2 cut(s) | 481, 530 |
| MvaI | CCWGG | 3 cut(s) | 878, 1007, 1136 |
| MvnI | CGCG | 6 cut(s) | 63, 530, 554, 556, 690, 1202 |
| NaeI | GCCGGC | 1 cut(s) | 535 |
| NciI | CCSGG | 8 cut(s) | 158, 733, 1032, 1159, 1175, 1278, 1330, 1353 |
| NcoI | CCATGG | 2 cut(s) | 606, 756 |
| NgoMIV | GCCGGC | 1 cut(s) | 533 |
| NlaIII | CATG | 7 cut(s) | 137, 508, 610, 760, 940, 982, 1198 |
| NlaIV | GGNNCC | 5 cut(s) | 334, 721, 730, 1088, 1275 |
| NmeAIII | GCCGAG | 6 cut(s) | 663, 750, 919, 1204, 1242, 1323 |
| NmuCI | GTSAC | 3 cut(s) | 202, 259, 340 |
| NruI | TCGCGA | 1 cut(s) | 1202 |
| NspV | TTCGAA | 1 cut(s) | 1308 |
| PagI | TCATGA | 1 cut(s) | 1194 |
| PcsI | WCGNNNNNNNCGW | 8 cut(s) | 462, 465, 516, 596, 777, 783, 995, 1344 |
| PdiI | GCCGGC | 1 cut(s) | 535 |
| PfeI | GAWTC | 3 cut(s) | 4, 184, 427 |
| PflFI | GACNNNGTC | 2 cut(s) | 1007, 1032 |
| PfoI | TCCNGGA | 1 cut(s) | 156 |
| PleI | GAGTC | 9 cut(s) | 233, 515, 655, 675, 809, 983, 1173, 1227, 1348 |
| PmaCI | CACGTG | 1 cut(s) | 345 |
| PmlI | CACGTG | 1 cut(s) | 345 |
| PpsI | GAGTC | 9 cut(s) | 233, 515, 655, 675, 809, 983, 1173, 1227, 1348 |
| Ppu21I | YACGTR | 1 cut(s) | 345 |
| PpuMI | RGGWCCY | 1 cut(s) | 874 |
| PshAI | GACNNNNGTC | 1 cut(s) | 908 |
| Psp124BI | GAGCTC | 1 cut(s) | 1194 |
| Psp5II | RGGWCCY | 1 cut(s) | 874 |
| Psp6I | CCWGG | 3 cut(s) | 876, 1005, 1134 |
| PspCI | CACGTG | 1 cut(s) | 345 |
| PspGI | CCWGG | 3 cut(s) | 876, 1005, 1134 |
| PspN4I | GGNNCC | 5 cut(s) | 334, 721, 730, 1088, 1275 |
| PspPI | GGNCC | 7 cut(s) | 333, 475, 564, 719, 874, 1003, 1274 |
| PspPPI | RGGWCCY | 1 cut(s) | 874 |
| PsyI | GACNNNGTC | 2 cut(s) | 1007, 1032 |
| RruI | TCGCGA | 1 cut(s) | 1202 |
| RsaI | GTAC | 4 cut(s) | 74, 503, 671, 1384 |
| RsaNI | GTAC | 4 cut(s) | 73, 502, 670, 1383 |
| RseI | CAYNNNNRTG | 1 cut(s) | 509 |
| SacI | GAGCTC | 1 cut(s) | 1194 |
| SacII | CCGCGG | 1 cut(s) | 531 |
| SalI | GTCGAC | 1 cut(s) | 1010 |
| SaqAI | TTAA | 1 cut(s) | 807 |
| Sau96I | GGNCC | 7 cut(s) | 333, 475, 564, 719, 874, 1003, 1274 |
| ScaI | AGTACT | 1 cut(s) | 671 |
| SchI | GAGTC | 9 cut(s) | 233, 515, 656, 675, 809, 984, 1174, 1228, 1349 |
| SduI | GDGCHC | 4 cut(s) | 291, 1122, 1175, 1194 |
| SexAI | ACCWGGT | 1 cut(s) | 1005 |
| SfaNI | GCATC | 2 cut(s) | 819, 1444 |
| Sfr303I | CCGCGG | 1 cut(s) | 531 |
| SfuI | TTCGAA | 1 cut(s) | 1308 |
| SgrBI | CCGCGG | 1 cut(s) | 531 |
| SinI | GGWCC | 3 cut(s) | 475, 874, 1003 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 509 |
| Sse9I | AATT | 6 cut(s) | 161, 379, 388, 763, 1018, 1438 |
| SspMI | CTAG | 3 cut(s) | 29, 801, 1091 |
| SstI | GAGCTC | 1 cut(s) | 1194 |
| StyI | CCWWGG | 3 cut(s) | 336, 606, 756 |
| TaaI | ACNGT | 3 cut(s) | 208, 1262, 1387 |
| TaiI | ACGT | 5 cut(s) | 347, 459, 513, 783, 1047 |
| TaqII | GACCGA | 1 cut(s) | 1225 |
| TasI | AATT | 6 cut(s) | 161, 379, 388, 763, 1018, 1438 |
| TatI | WGTACW | 3 cut(s) | 72, 501, 669 |
| TauI | GCSGC | 8 cut(s) | 424, 436, 499, 530, 533, 690, 755, 1297 |
| TfiI | GAWTC | 3 cut(s) | 4, 184, 427 |
| Tru1I | TTAA | 1 cut(s) | 807 |
| Tru9I | TTAA | 1 cut(s) | 807 |
| TscAI | CASTG | 2 cut(s) | 211, 228 |
| TseFI | GTSAC | 3 cut(s) | 202, 259, 340 |
| TseI | GCWGC | 3 cut(s) | 445, 960, 1431 |
| Tsp45I | GTSAC | 3 cut(s) | 202, 259, 340 |
| TspDTI | ATGAA | 3 cut(s) | 521, 925, 1007 |
| TspGWI | ACGGA | 1 cut(s) | 1050 |
| TspRI | CASTG | 2 cut(s) | 211, 228 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1007, 1032 |
| VpaK11BI | GGWCC | 3 cut(s) | 475, 874, 1003 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 869 |
| XapI | RAATTY | 4 cut(s) | 161, 388, 1018, 1438 |
| XmiI | GTMKAC | 3 cut(s) | 138, 783, 1011 |
| XspI | CTAG | 3 cut(s) | 29, 801, 1091 |
| ZraI | GACGTC | 2 cut(s) | 781, 1045 |
| ZrmI | AGTACT | 1 cut(s) | 671 |