Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001360

Physical Location & Seq

Genomic Coordinates Reverse (-)

67363879 .. 67364340

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030781

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAACGTCGACTACTCCTCCACGGTCGGCGACGACTTCCGCAACGCGCGGTGGAGGGCCGTGCCGTTCACGCATCCATCTACGCTGGAGACAATTGCCATGGAAGCCGATCTCAAATCGAAGATCAAGTTTGATTTGGAGTCGTTTCTCAAAGCCAAGCAGTACTACAACCTACTCGCCCCCGTCCGAAACCCCTCCGGCACTGGGAAATCTAGCTTCGTCGCCGCCATGGCCAATTTCCTCGGCTACGACGTCTACGATCTCGACCTCTCTAGGGTTAAAGACGACTTGGAGTTGAAGATGCTTCTTTTACAAACCACGAGCAAGTCAGTGATCCTCATCGAGGACCTGGATCGGTTCTTCGCCAAGAAATCGACGGCGGTCGGCTTCTCCGGCATATCGAACTTCATGGATGGCTTGCTAAACTCGTGCTGCGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

147

Amino Acids

16.29

Weight (kDa)

5.79

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	65 - 140	1.4e-06	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46620
fragaria_vesca	FvH4_7g17220 FvH4_7g32500
malus_domestica	MD01G1085900.v1.1 MD01G1225700.v1.1 MD02G1229200.v1.1 MD07G1155000.v1.1 MD07G1296200.v1.1
prunus_persica	Prupe.2G193700_v2.0.a1 Prupe.2G315800_v2.0.a1
pyrus_communis	pycom01g23420 pycom07g15210 pycom07g26900
rosa_chinensis	RchiOBHm_Chr1g0360611 RchiOBHm_Chr1g0382341 RchiOBHm_Chr2g0086831 RchiOBHm_Chr2g0139501 RchiOBHm_Chr3g0458211 RchiOBHm_Chr3g0478421 RchiOBHm_Chr4g0427361
rosa_laevigata	RLG00000002572 RLG00000009827 RLG00000026185 RLG00000027795 RLG00000030781
rosa_multiflora	Rmu_sc0000110.1_g000040 Rmu_sc0001436.1_g000033 Rmu_sc0002188.1_g000003 Rmu_sc0002535.1_g000007 Rmu_sc0003020.1_g000016 Rmu_sc0003481.1_g000013 Rmu_sc0004697.1_g000002 Rmu_sc0007558.1_g000001 Rmu_sc0010192.1_g000001 Rmu_sc0015587.1_g000001 Rmu_sc0042341.1_g000002
rosa_roxburghii	Rroxscaffold_2G00093530 Rroxscaffold_4G00278180
rosa_rugosa	Rorug01G0280000 Rorug01G0433500 Rorug02G0149500 Rorug05G0571400
rosa_samantha	Rh1AG292200 Rh1BG257100 Rh1BG414500 Rh1CG274900 Rh1DG287000 Rh1DG446600 Rh5BG487600 Rh5CG511800
rosa_wichuraiana	Rw1G025870 Rw1G041280 Rw5G043520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	255
AccI	GTMKAC	2 cut(s)	9, 255
AccII	CGCG	2 cut(s)	47, 49
AciI	CCGC	4 cut(s)	40, 49, 225, 380
AclWI	GGATC	2 cut(s)	328, 360
AcoI	YGGCCR	1 cut(s)	231
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	3 cut(s)	204, 274, 343
AgsI	TTSAA	1 cut(s)	298
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	1 cut(s)	216
AluI	AGCT	1 cut(s)	216
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	2 cut(s)	328, 360
AoxI	GGCC	2 cut(s)	57, 231
ApeKI	GCWGC	1 cut(s)	432
AspLEI	GCGC	2 cut(s)	49, 437
AspS9I	GGNCC	2 cut(s)	57, 346
AvaII	GGWCC	1 cut(s)	346
BalI	TGGCCA	1 cut(s)	233
BauI	CACGAG	2 cut(s)	319, 427
BbvI	GCAGC	1 cut(s)	419
BccI	CCATC	2 cut(s)	85, 407
BceAI	ACGGC	3 cut(s)	44, 49, 393
BciT130I	CCWGG	1 cut(s)	350
BcoDI	GTCTC	1 cut(s)	83
BfaI	CTAG	2 cut(s)	213, 273
BglI	GCCNNNNNGGC	1 cut(s)	230
BisI	GCNGC	2 cut(s)	225, 433
BlsI	GCNGC	2 cut(s)	226, 434
BmcAI	AGTACT	1 cut(s)	164
Bme1390I	CCNGG	1 cut(s)	350
Bme18I	GGWCC	1 cut(s)	346
BmgT120I	GGNCC	2 cut(s)	57, 346
BmrFI	CCNGG	1 cut(s)	350
BmrI	ACTGGG	1 cut(s)	213
BmsI	GCATC	2 cut(s)	82, 291
BmuI	ACTGGG	1 cut(s)	213
BoxI	GACNNNNGTC	1 cut(s)	380
BpmI	CTGGAG	1 cut(s)	107
BsaBI	GATNNNNATC	1 cut(s)	338
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	4 cut(s)	21, 99, 228, 241
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 274, 343
Bse1I	ACTGG	1 cut(s)	208
Bse8I	GATNNNNATC	1 cut(s)	338
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	4 cut(s)	21, 99, 228, 241
BseGI	GGATG	2 cut(s)	73, 418
BseJI	GATNNNNATC	1 cut(s)	338
BseLI	CCNNNNNNNGG	3 cut(s)	204, 274, 343
BseNI	ACTGG	1 cut(s)	208
BseRI	GAGGAG	1 cut(s)	7
BseXI	GCAGC	1 cut(s)	419
Bsh1236I	CGCG	2 cut(s)	47, 49
Bsh1285I	CGRYCG	2 cut(s)	27, 384
BshFI	GGCC	2 cut(s)	59, 233
BsiEI	CGRYCG	2 cut(s)	27, 384
BsiSI	CCGG	2 cut(s)	198, 393
BslI	CCNNNNNNNGG	3 cut(s)	204, 274, 343
BsmAI	GTCTC	1 cut(s)	83
BsnI	GGCC	2 cut(s)	59, 233
Bsp143I	GATC	5 cut(s)	109, 123, 259, 333, 352
Bsp19I	CCATGG	2 cut(s)	99, 228
BspACI	CCGC	4 cut(s)	40, 49, 225, 380
BspANI	GGCC	2 cut(s)	59, 233
BspFNI	CGCG	2 cut(s)	47, 49
BspPI	GGATC	2 cut(s)	328, 360
BsrI	ACTGG	1 cut(s)	208
BssECI	CCNNGG	4 cut(s)	21, 99, 228, 241
BssMI	GATC	5 cut(s)	109, 123, 259, 333, 352
BssNI	GRCGYC	1 cut(s)	252
BssSI	CACGAG	2 cut(s)	319, 427
BssT1I	CCWWGG	2 cut(s)	99, 228
Bst2BI	CACGAG	2 cut(s)	319, 427
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	1 cut(s)	25
BstACI	GRCGYC	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	419
BstDSI	CCRYGG	3 cut(s)	21, 99, 228
BstENI	CCTNNNNNAGG	1 cut(s)	341
BstF5I	GGATG	2 cut(s)	73, 418
BstFNI	CGCG	2 cut(s)	47, 49
BstHHI	GCGC	2 cut(s)	49, 437
BstKTI	GATC	5 cut(s)	112, 126, 262, 336, 355
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	5 cut(s)	109, 123, 259, 333, 352
BstMCI	CGRYCG	2 cut(s)	27, 384
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 104, 230, 393
BstNI	CCWGG	1 cut(s)	350
BstPAI	GACNNNNGTC	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	348
BstUI	CGCG	2 cut(s)	47, 49
BstV1I	GCAGC	1 cut(s)	419
BsuRI	GGCC	2 cut(s)	59, 233
BtgI	CCRYGG	3 cut(s)	21, 99, 228
BtsCI	GGATG	2 cut(s)	73, 418
BtsIMutI	CAGTG	2 cut(s)	201, 336
Cac8I	GCNNGC	1 cut(s)	419
CfoI	GCGC	2 cut(s)	49, 437
Cfr13I	GGNCC	2 cut(s)	57, 346
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	3 cut(s)	100, 229, 409
CviJI	RGCY	8 cut(s)	59, 107, 155, 216, 233, 246, 387, 417
CviKI_1	RGCY	8 cut(s)	59, 107, 155, 216, 233, 246, 387, 417
CviQI	GTAC	1 cut(s)	163
DpnI	GATC	5 cut(s)	111, 125, 261, 335, 354
DpnII	GATC	5 cut(s)	109, 123, 259, 333, 352
EaeI	YGGCCR	1 cut(s)	231
Eco130I	CCWWGG	2 cut(s)	99, 228
Eco47I	GGWCC	1 cut(s)	346
EcoNI	CCTNNNNNAGG	1 cut(s)	341
EcoO109I	RGGNCCY	1 cut(s)	346
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	2 cut(s)	99, 228
ErhI	CCWWGG	2 cut(s)	99, 228
FaeI	CATG	3 cut(s)	103, 232, 412
FaiI	YATR	4 cut(s)	101, 230, 398, 410
FatI	CATG	3 cut(s)	99, 228, 408
FblI	GTMKAC	2 cut(s)	9, 255
Fnu4HI	GCNGC	2 cut(s)	225, 433
FokI	GGATG	2 cut(s)	60, 425
Fsp4HI	GCNGC	2 cut(s)	225, 433
FspBI	CTAG	2 cut(s)	213, 273
GlaI	GCGC	2 cut(s)	48, 436
GluI	GCNGC	2 cut(s)	225, 433
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	2 cut(s)	59, 233
HapII	CCGG	2 cut(s)	198, 393
HhaI	GCGC	2 cut(s)	49, 437
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	3 cut(s)	103, 232, 412
Hin6I	GCGC	2 cut(s)	47, 435
HinP1I	GCGC	2 cut(s)	47, 435
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	1 cut(s)	140
HpaII	CCGG	2 cut(s)	198, 393
Hpy166II	GTNNAC	3 cut(s)	10, 69, 256
Hpy188I	TCNGA	1 cut(s)	188
Hpy188III	TCNNGA	1 cut(s)	263
Hpy8I	GTNNAC	3 cut(s)	10, 69, 256
Hpy99I	CGWCG	5 cut(s)	11, 35, 224, 254, 379
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	2 cut(s)	6, 252
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 104, 230, 393
HpySE526I	ACGT	2 cut(s)	6, 252
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	3 cut(s)	103, 232, 412
HspAI	GCGC	2 cut(s)	47, 435
Kzo9I	GATC	5 cut(s)	109, 123, 259, 333, 352
LpnPI	CCDG	6 cut(s)	71, 189, 211, 335, 362, 406
Lsp1109I	GCAGC	1 cut(s)	419
LweI	GCATC	2 cut(s)	82, 291
MaeI	CTAG	2 cut(s)	213, 273
MaeII	ACGT	2 cut(s)	6, 252
MalI	GATC	5 cut(s)	111, 125, 261, 335, 354
MboI	GATC	5 cut(s)	109, 123, 259, 333, 352
MboII	GAAGA	3 cut(s)	133, 310, 352
MfeI	CAATTG	1 cut(s)	93
MlsI	TGGCCA	1 cut(s)	233
MluCI	AATT	2 cut(s)	93, 235
MluNI	TGGCCA	1 cut(s)	233
MlyI	GAGTC	1 cut(s)	149
MnlI	CCTC	7 cut(s)	28, 48, 205, 251, 278, 337, 347
Mox20I	TGGCCA	1 cut(s)	233
MscI	TGGCCA	1 cut(s)	233
MseI	TTAA	1 cut(s)	279
Msp20I	TGGCCA	1 cut(s)	233
MspI	CCGG	2 cut(s)	198, 393
MspR9I	CCNGG	1 cut(s)	350
MunI	CAATTG	1 cut(s)	93
MvaI	CCWGG	1 cut(s)	350
MvnI	CGCG	2 cut(s)	47, 49
MwoI	GCNNNNNNNGC	4 cut(s)	70, 104, 230, 393
NcoI	CCATGG	2 cut(s)	99, 228
NdeII	GATC	5 cut(s)	109, 123, 259, 333, 352
NlaIII	CATG	3 cut(s)	103, 232, 412
NmeAIII	GCCGAG	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	2 cut(s)	249, 255
PkrI	GCNGC	2 cut(s)	226, 434
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PpuMI	RGGWCCY	1 cut(s)	346
PshAI	GACNNNNGTC	1 cut(s)	380
Psp5II	RGGWCCY	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PspPI	GGNCC	2 cut(s)	57, 346
PspPPI	RGGWCCY	1 cut(s)	346
PsrI	GAACNNNNNNTAC	1 cut(s)	28
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SalI	GTCGAC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	2 cut(s)	225, 433
Sau3AI	GATC	5 cut(s)	109, 123, 259, 333, 352
Sau96I	GGNCC	2 cut(s)	57, 346
ScaI	AGTACT	1 cut(s)	164
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	350
SetI	ASST	6 cut(s)	9, 174, 218, 255, 270, 351
SfaNI	GCATC	2 cut(s)	82, 291
SinI	GGWCC	1 cut(s)	346
Sse9I	AATT	2 cut(s)	93, 235
SsiI	CCGC	4 cut(s)	40, 49, 225, 380
SspMI	CTAG	2 cut(s)	213, 273
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	2 cut(s)	99, 228
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	2 cut(s)	9, 255
TaqI	TCGA	6 cut(s)	9, 119, 264, 342, 374, 401
TasI	AATT	2 cut(s)	93, 235
TatI	WGTACW	1 cut(s)	162
TauI	GCSGC	1 cut(s)	227
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	2 cut(s)	208, 336
TseI	GCWGC	1 cut(s)	432
TspDTI	ATGAA	2 cut(s)	17, 397
TspRI	CASTG	2 cut(s)	208, 336
VpaK11BI	GGWCC	1 cut(s)	346
XagI	CCTNNNNNAGG	1 cut(s)	341
XmiI	GTMKAC	2 cut(s)	9, 255
XspI	CTAG	2 cut(s)	213, 273
ZraI	GACGTC	1 cut(s)	253
ZrmI	AGTACT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.