Domain associated at C-terminal with AAA
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| AAA_assoc | PF14363 | 31 - 118 | 5.8e-13 | Domain associated at C-terminal with AAA |
| AAA | PF00004 | 236 - 354 | 1.4e-16 | ATPase family associated with various cellular activities (AAA) |
| AAA_lid_At3g28540 | PF25568 | 355 - 418 | 3.8e-11 | At3g28540-like, AAA+ ATPase lid domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1044 |
| AccB1I | GGYRCC | 3 cut(s) | 154, 332, 725 |
| AccBSI | CCGCTC | 2 cut(s) | 1274, 1462 |
| AccI | GTMKAC | 1 cut(s) | 1008 |
| AccII | CGCG | 6 cut(s) | 551, 553, 687, 1199, 1221, 1223 |
| AccIII | TCCGGA | 1 cut(s) | 543 |
| AclWI | GGATC | 2 cut(s) | 853, 1043 |
| AcoI | YGGCCR | 5 cut(s) | 434, 682, 756, 1025, 1289 |
| AcsI | RAATTY | 4 cut(s) | 161, 388, 1015, 1432 |
| AcyI | GRCGYC | 2 cut(s) | 333, 1041 |
| AfaI | GTAC | 3 cut(s) | 140, 503, 713 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 391, 1298 |
| AgeI | ACCGGT | 1 cut(s) | 879 |
| AgsI | TTSAA | 6 cut(s) | 13, 151, 166, 236, 823, 1307 |
| AjiI | CACGTC | 1 cut(s) | 457 |
| AjnI | CCWGG | 1 cut(s) | 1002 |
| AleI | CACNNNNGTG | 1 cut(s) | 905 |
| Alw21I | GWGCWC | 2 cut(s) | 399, 1119 |
| Alw26I | GTCTC | 1 cut(s) | 587 |
| AlwI | GGATC | 2 cut(s) | 853, 1043 |
| Aor13HI | TCCGGA | 1 cut(s) | 543 |
| AoxI | GGCC | 7 cut(s) | 434, 560, 682, 715, 756, 1025, 1289 |
| ApeKI | GCWGC | 4 cut(s) | 381, 445, 957, 1425 |
| ApoI | RAATTY | 4 cut(s) | 161, 388, 1015, 1432 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 617, 649, 869, 901, 1084, 1116 |
| AsiGI | ACCGGT | 1 cut(s) | 879 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 285 |
| AspLEI | GCGC | 4 cut(s) | 335, 553, 962, 1223 |
| AspS9I | GGNCC | 4 cut(s) | 561, 716, 877, 1206 |
| AsuC2I | CCSGG | 7 cut(s) | 82, 1029, 1156, 1172, 1312, 1327, 1347 |
| AsuHPI | GGTGA | 6 cut(s) | 241, 253, 868, 919, 1120, 1352 |
| AvaII | GGWCC | 2 cut(s) | 877, 1206 |
| AxyI | CCTNAGG | 1 cut(s) | 1131 |
| BalI | TGGCCA | 1 cut(s) | 758 |
| BanI | GGYRCC | 3 cut(s) | 154, 332, 725 |
| BanII | GRGCYC | 1 cut(s) | 1172 |
| BauI | CACGAG | 1 cut(s) | 798 |
| BbsI | GAAGAC | 3 cut(s) | 243, 537, 876 |
| Bbv12I | GWGCWC | 2 cut(s) | 399, 1119 |
| BbvI | GCAGC | 4 cut(s) | 368, 457, 944, 1437 |
| BccI | CCATC | 2 cut(s) | 970, 1256 |
| BciT130I | CCWGG | 1 cut(s) | 1004 |
| BcnI | CCSGG | 7 cut(s) | 82, 1029, 1156, 1172, 1312, 1327, 1347 |
| BcoDI | GTCTC | 1 cut(s) | 587 |
| BfaI | CTAG | 2 cut(s) | 590, 1088 |
| BfoI | RGCGCY | 1 cut(s) | 336 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 723, 755 |
| Bme1390I | CCNGG | 8 cut(s) | 82, 1004, 1029, 1156, 1172, 1312, 1327, 1347 |
| Bme18I | GGWCC | 2 cut(s) | 877, 1206 |
| BmgBI | CACGTC | 1 cut(s) | 457 |
| BmgT120I | GGNCC | 4 cut(s) | 561, 716, 877, 1206 |
| BmiI | GGNNCC | 6 cut(s) | 156, 334, 520, 718, 727, 1085 |
| BmrFI | CCNGG | 8 cut(s) | 82, 1004, 1029, 1156, 1172, 1312, 1327, 1347 |
| BmsI | GCATC | 2 cut(s) | 816, 1438 |
| BpiI | GAAGAC | 3 cut(s) | 243, 537, 876 |
| BpmI | CTGGAG | 3 cut(s) | 275, 494, 821 |
| BpuEI | CTTGAG | 1 cut(s) | 1432 |
| BpuMI | CCSGG | 7 cut(s) | 82, 1029, 1156, 1172, 1312, 1327, 1347 |
| BsaBI | GATNNNNATC | 2 cut(s) | 789, 863 |
| BsaHI | GRCGYC | 2 cut(s) | 333, 1041 |
| BsaJI | CCNNGG | 7 cut(s) | 336, 603, 753, 766, 900, 1295, 1326 |
| BsaWI | WCCGGW | 4 cut(s) | 263, 543, 879, 917 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 506, 536, 704, 734 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 391, 1298 |
| Bse118I | RCCGGY | 3 cut(s) | 728, 879, 1451 |
| Bse1I | ACTGG | 1 cut(s) | 142 |
| Bse21I | CCTNAGG | 1 cut(s) | 1131 |
| Bse8I | GATNNNNATC | 2 cut(s) | 789, 863 |
| BseAI | TCCGGA | 1 cut(s) | 543 |
| BseBI | CCWGG | 1 cut(s) | 1004 |
| BseDI | CCNNGG | 7 cut(s) | 336, 603, 753, 766, 900, 1295, 1326 |
| BseGI | GGATG | 2 cut(s) | 450, 1422 |
| BseJI | GATNNNNATC | 2 cut(s) | 789, 863 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 391, 1298 |
| BseMII | CTCAG | 2 cut(s) | 1145, 1451 |
| BseNI | ACTGG | 1 cut(s) | 142 |
| BseRI | GAGGAG | 3 cut(s) | 511, 824, 1154 |
| BseX3I | CGGCCG | 4 cut(s) | 434, 682, 1025, 1289 |
| BseXI | GCAGC | 4 cut(s) | 368, 457, 944, 1437 |
| Bsh1236I | CGCG | 6 cut(s) | 551, 553, 687, 1199, 1221, 1223 |
| Bsh1285I | CGRYCG | 4 cut(s) | 437, 685, 1028, 1292 |
| BshFI | GGCC | 7 cut(s) | 436, 562, 684, 717, 758, 1027, 1291 |
| BshNI | GGYRCC | 3 cut(s) | 154, 332, 725 |
| BshTI | ACCGGT | 1 cut(s) | 879 |
| BsiEI | CGRYCG | 4 cut(s) | 437, 685, 1028, 1292 |
| BsiHKAI | GWGCWC | 2 cut(s) | 399, 1119 |
| BslFI | GGGAC | 1 cut(s) | 1343 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 391, 1298 |
| BsmAI | GTCTC | 1 cut(s) | 587 |
| BsmBI | CGTCTC | 1 cut(s) | 587 |
| BsmFI | GGGAC | 1 cut(s) | 1343 |
| BsnI | GGCC | 7 cut(s) | 436, 562, 684, 717, 758, 1027, 1291 |
| Bsp1286I | GDGCHC | 3 cut(s) | 399, 1119, 1172 |
| Bsp13I | TCCGGA | 1 cut(s) | 543 |
| Bsp1407I | TGTACA | 1 cut(s) | 501 |
| Bsp19I | CCATGG | 2 cut(s) | 603, 753 |
| Bsp68I | TCGCGA | 1 cut(s) | 1199 |
| BspANI | GGCC | 7 cut(s) | 436, 562, 684, 717, 758, 1027, 1291 |
| BspCNI | CTCAG | 2 cut(s) | 1144, 1450 |
| BspEI | TCCGGA | 1 cut(s) | 543 |
| BspFNI | CGCG | 6 cut(s) | 551, 553, 687, 1199, 1221, 1223 |
| BspLI | GGNNCC | 6 cut(s) | 156, 334, 520, 718, 727, 1085 |
| BspPI | GGATC | 2 cut(s) | 853, 1043 |
| BspT107I | GGYRCC | 3 cut(s) | 154, 332, 725 |
| BsrBI | CCGCTC | 2 cut(s) | 1274, 1462 |
| BsrFI | RCCGGY | 3 cut(s) | 728, 879, 1451 |
| BsrGI | TGTACA | 1 cut(s) | 501 |
| BsrI | ACTGG | 1 cut(s) | 142 |
| BssAI | RCCGGY | 3 cut(s) | 728, 879, 1451 |
| BssECI | CCNNGG | 7 cut(s) | 336, 603, 753, 766, 900, 1295, 1326 |
| BssNI | GRCGYC | 2 cut(s) | 333, 1041 |
| BssSI | CACGAG | 1 cut(s) | 798 |
| BssT1I | CCWWGG | 3 cut(s) | 336, 603, 753 |
| Bst2BI | CACGAG | 1 cut(s) | 798 |
| Bst2UI | CCWGG | 1 cut(s) | 1004 |
| Bst4CI | ACNGT | 1 cut(s) | 1381 |
| Bst6I | CTCTTC | 2 cut(s) | 689, 960 |
| BstACI | GRCGYC | 2 cut(s) | 333, 1041 |
| BstAUI | TGTACA | 1 cut(s) | 501 |
| BstC8I | GCNNGC | 3 cut(s) | 114, 944, 1187 |
| BstDEI | CTNAG | 2 cut(s) | 1131, 1437 |
| BstDSI | CCRYGG | 3 cut(s) | 603, 753, 900 |
| BstF5I | GGATG | 2 cut(s) | 450, 1422 |
| BstFNI | CGCG | 6 cut(s) | 551, 553, 687, 1199, 1221, 1223 |
| BstH2I | RGCGCY | 1 cut(s) | 336 |
| BstHHI | GCGC | 4 cut(s) | 335, 553, 962, 1223 |
| BstMAI | GTCTC | 1 cut(s) | 587 |
| BstMCI | CGRYCG | 4 cut(s) | 437, 685, 1028, 1292 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 442, 484, 493, 525, 559, 574, 723, 738, 755 |
| BstNI | CCWGG | 1 cut(s) | 1004 |
| BstSCI | CCNGG | 8 cut(s) | 80, 1002, 1027, 1154, 1170, 1310, 1325, 1345 |
| BstUI | CGCG | 6 cut(s) | 551, 553, 687, 1199, 1221, 1223 |
| BstV1I | GCAGC | 4 cut(s) | 368, 457, 944, 1437 |
| BstV2I | GAAGAC | 3 cut(s) | 243, 537, 876 |
| BstZI | CGGCCG | 4 cut(s) | 434, 682, 1025, 1289 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1131 |
| BsuRI | GGCC | 7 cut(s) | 436, 562, 684, 717, 758, 1027, 1291 |
| BtgI | CCRYGG | 3 cut(s) | 603, 753, 900 |
| BtgZI | GCGATG | 1 cut(s) | 1275 |
| BtrI | CACGTC | 1 cut(s) | 457 |
| BtsCI | GGATG | 2 cut(s) | 450, 1422 |
| BtuMI | TCGCGA | 1 cut(s) | 1199 |
| Cac8I | GCNNGC | 3 cut(s) | 114, 944, 1187 |
| CfoI | GCGC | 4 cut(s) | 335, 553, 962, 1223 |
| Cfr10I | RCCGGY | 3 cut(s) | 728, 879, 1451 |
| Cfr13I | GGNCC | 4 cut(s) | 561, 716, 877, 1206 |
| CseI | GACGC | 2 cut(s) | 595, 676 |
| CsiI | ACCWGGT | 1 cut(s) | 1002 |
| Csp6I | GTAC | 3 cut(s) | 139, 502, 712 |
| CspAI | ACCGGT | 1 cut(s) | 879 |
| CviAII | CATG | 7 cut(s) | 134, 343, 505, 604, 754, 934, 954 |
| CviQI | GTAC | 3 cut(s) | 139, 502, 712 |
| DdeI | CTNAG | 2 cut(s) | 1131, 1437 |
| DinI | GGCGCC | 1 cut(s) | 334 |
| EaeI | YGGCCR | 5 cut(s) | 434, 682, 756, 1025, 1289 |
| EagI | CGGCCG | 4 cut(s) | 434, 682, 1025, 1289 |
| Eam1104I | CTCTTC | 2 cut(s) | 689, 960 |
| EarI | CTCTTC | 2 cut(s) | 689, 960 |
| EciI | GGCGGA | 3 cut(s) | 428, 439, 1190 |
| EclXI | CGGCCG | 4 cut(s) | 434, 682, 1025, 1289 |
| Eco130I | CCWWGG | 3 cut(s) | 336, 603, 753 |
| Eco24I | GRGCYC | 1 cut(s) | 1172 |
| Eco47I | GGWCC | 2 cut(s) | 877, 1206 |
| Eco52I | CGGCCG | 4 cut(s) | 434, 682, 1025, 1289 |
| Eco81I | CCTNAGG | 1 cut(s) | 1131 |
| EcoRI | GAATTC | 2 cut(s) | 161, 1432 |
| EcoRII | CCWGG | 1 cut(s) | 1002 |
| EcoT14I | CCWWGG | 3 cut(s) | 336, 603, 753 |
| EcoT38I | GRGCYC | 1 cut(s) | 1172 |
| EgeI | GGCGCC | 1 cut(s) | 334 |
| EheI | GGCGCC | 1 cut(s) | 334 |
| ErhI | CCWWGG | 3 cut(s) | 336, 603, 753 |
| Esp3I | CGTCTC | 1 cut(s) | 587 |
| FaeI | CATG | 7 cut(s) | 137, 346, 508, 607, 757, 937, 957 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 686, 718, 725, 757 |
| FaqI | GGGAC | 1 cut(s) | 1343 |
| FatI | CATG | 7 cut(s) | 133, 342, 504, 603, 753, 933, 953 |
| FauI | CCCGC | 4 cut(s) | 105, 480, 1267, 1462 |
| FblI | GTMKAC | 1 cut(s) | 1008 |
| FokI | GGATG | 2 cut(s) | 437, 1429 |
| FriOI | GRGCYC | 1 cut(s) | 1172 |
| FspBI | CTAG | 2 cut(s) | 590, 1088 |
| GlaI | GCGC | 4 cut(s) | 334, 552, 961, 1222 |
| GsuI | CTGGAG | 3 cut(s) | 275, 494, 821 |
| HaeII | RGCGCY | 1 cut(s) | 336 |
| HaeIII | GGCC | 7 cut(s) | 436, 562, 684, 717, 758, 1027, 1291 |
| HgaI | GACGC | 2 cut(s) | 595, 676 |
| HhaI | GCGC | 4 cut(s) | 335, 553, 962, 1223 |
| Hin1I | GRCGYC | 2 cut(s) | 333, 1041 |
| Hin1II | CATG | 7 cut(s) | 137, 346, 508, 607, 757, 937, 957 |
| Hin6I | GCGC | 4 cut(s) | 333, 551, 960, 1221 |
| HinP1I | GCGC | 4 cut(s) | 333, 551, 960, 1221 |
| HincII | GTYRAC | 1 cut(s) | 1009 |
| HindII | GTYRAC | 1 cut(s) | 1009 |
| HindIII | AAGCTT | 2 cut(s) | 700, 1397 |
| HphI | GGTGA | 6 cut(s) | 241, 253, 868, 919, 1120, 1352 |
| Hpy166II | GTNNAC | 6 cut(s) | 139, 514, 573, 984, 1009, 1343 |
| Hpy188III | TCNNGA | 8 cut(s) | 544, 691, 788, 838, 985, 1198, 1317, 1411 |
| Hpy8I | GTNNAC | 6 cut(s) | 139, 514, 573, 984, 1009, 1343 |
| Hpy99I | CGWCG | 8 cut(s) | 461, 464, 539, 589, 749, 1043, 1096, 1259 |
| HpyAV | CCTTC | 3 cut(s) | 403, 1105, 1361 |
| HpyCH4III | ACNGT | 1 cut(s) | 1381 |
| HpyCH4IV | ACGT | 4 cut(s) | 456, 510, 1041, 1355 |
| HpyCH4V | TGCA | 4 cut(s) | 178, 198, 445, 1249 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 442, 484, 493, 525, 559, 574, 723, 738, 755 |
| HpyF3I | CTNAG | 2 cut(s) | 1131, 1437 |
| HpySE526I | ACGT | 4 cut(s) | 456, 510, 1041, 1355 |
| Hsp92I | GRCGYC | 2 cut(s) | 333, 1041 |
| Hsp92II | CATG | 7 cut(s) | 137, 346, 508, 607, 757, 937, 957 |
| HspAI | GCGC | 4 cut(s) | 333, 551, 960, 1221 |
| KasI | GGCGCC | 1 cut(s) | 332 |
| Kpn2I | TCCGGA | 1 cut(s) | 543 |
| LmnI | GCTCC | 5 cut(s) | 475, 524, 1114, 1271, 1459 |
| Lsp1109I | GCAGC | 4 cut(s) | 368, 457, 944, 1437 |
| LweI | GCATC | 2 cut(s) | 816, 1438 |
| MabI | ACCWGGT | 1 cut(s) | 1002 |
| MaeI | CTAG | 2 cut(s) | 590, 1088 |
| MaeII | ACGT | 4 cut(s) | 456, 510, 1041, 1355 |
| MaeIII | GTNAC | 4 cut(s) | 202, 259, 1064, 1351 |
| MbiI | CCGCTC | 2 cut(s) | 1274, 1462 |
| MhlI | GDGCHC | 3 cut(s) | 399, 1119, 1172 |
| MlsI | TGGCCA | 1 cut(s) | 758 |
| MluCI | AATT | 5 cut(s) | 161, 388, 760, 1015, 1432 |
| MluNI | TGGCCA | 1 cut(s) | 758 |
| Mly113I | GGCGCC | 1 cut(s) | 333 |
| MlyI | GAGTC | 5 cut(s) | 233, 653, 672, 806, 1343 |
| MmeI | TCCRAC | 1 cut(s) | 1013 |
| Mox20I | TGGCCA | 1 cut(s) | 758 |
| MroI | TCCGGA | 1 cut(s) | 543 |
| MroXI | GAANNNNTTC | 1 cut(s) | 285 |
| MscI | TGGCCA | 1 cut(s) | 758 |
| MslI | CAYNNNNRTG | 2 cut(s) | 509, 905 |
| Msp20I | TGGCCA | 1 cut(s) | 758 |
| MspA1I | CMGCKG | 1 cut(s) | 1469 |
| MspR9I | CCNGG | 8 cut(s) | 82, 1004, 1029, 1156, 1172, 1312, 1327, 1347 |
| MvaI | CCWGG | 1 cut(s) | 1004 |
| MvnI | CGCG | 6 cut(s) | 551, 553, 687, 1199, 1221, 1223 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 442, 484, 493, 525, 559, 574, 723, 738, 755 |
| NarI | GGCGCC | 1 cut(s) | 333 |
| NciI | CCSGG | 7 cut(s) | 82, 1029, 1156, 1172, 1312, 1327, 1347 |
| NcoI | CCATGG | 2 cut(s) | 603, 753 |
| NlaIII | CATG | 7 cut(s) | 137, 346, 508, 607, 757, 937, 957 |
| NlaIV | GGNNCC | 6 cut(s) | 156, 334, 520, 718, 727, 1085 |
| NmeAIII | GCCGAG | 5 cut(s) | 660, 747, 916, 1239, 1320 |
| NmuCI | GTSAC | 4 cut(s) | 202, 259, 1064, 1351 |
| NruI | TCGCGA | 1 cut(s) | 1199 |
| OliI | CACNNNNGTG | 1 cut(s) | 905 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 465, 581, 593, 780, 992 |
| PdmI | GAANNNNTTC | 1 cut(s) | 285 |
| PfeI | GAWTC | 5 cut(s) | 4, 58, 184, 304, 1201 |
| PflFI | GACNNNGTC | 2 cut(s) | 850, 1004 |
| PinAI | ACCGGT | 1 cut(s) | 879 |
| PleI | GAGTC | 5 cut(s) | 233, 652, 672, 806, 1342 |
| PluTI | GGCGCC | 1 cut(s) | 336 |
| PpsI | GAGTC | 5 cut(s) | 233, 652, 672, 806, 1342 |
| Psp6I | CCWGG | 1 cut(s) | 1002 |
| PspGI | CCWGG | 1 cut(s) | 1002 |
| PspN4I | GGNNCC | 6 cut(s) | 156, 334, 520, 718, 727, 1085 |
| PspPI | GGNCC | 4 cut(s) | 561, 716, 877, 1206 |
| PsyI | GACNNNGTC | 2 cut(s) | 850, 1004 |
| RruI | TCGCGA | 1 cut(s) | 1199 |
| RsaI | GTAC | 3 cut(s) | 140, 503, 713 |
| RsaNI | GTAC | 3 cut(s) | 139, 502, 712 |
| RseI | CAYNNNNRTG | 2 cut(s) | 509, 905 |
| SalI | GTCGAC | 1 cut(s) | 1007 |
| Sau96I | GGNCC | 4 cut(s) | 561, 716, 877, 1206 |
| SchI | GAGTC | 5 cut(s) | 233, 653, 672, 806, 1343 |
| ScrFI | CCNGG | 8 cut(s) | 82, 1004, 1029, 1156, 1172, 1312, 1327, 1347 |
| SduI | GDGCHC | 3 cut(s) | 399, 1119, 1172 |
| SexAI | ACCWGGT | 1 cut(s) | 1002 |
| SfaNI | GCATC | 2 cut(s) | 816, 1438 |
| SfoI | GGCGCC | 1 cut(s) | 334 |
| SinI | GGWCC | 2 cut(s) | 877, 1206 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 509, 905 |
| SmlI | CTYRAG | 1 cut(s) | 1411 |
| SmoI | CTYRAG | 1 cut(s) | 1411 |
| Sse9I | AATT | 5 cut(s) | 161, 388, 760, 1015, 1432 |
| SspDI | GGCGCC | 1 cut(s) | 332 |
| SspMI | CTAG | 2 cut(s) | 590, 1088 |
| StyD4I | CCNGG | 8 cut(s) | 80, 1002, 1027, 1154, 1170, 1310, 1325, 1345 |
| StyI | CCWWGG | 3 cut(s) | 336, 603, 753 |
| TaaI | ACNGT | 1 cut(s) | 1381 |
| TaiI | ACGT | 4 cut(s) | 459, 513, 1044, 1358 |
| TaqII | GACCGA | 1 cut(s) | 1222 |
| TasI | AATT | 5 cut(s) | 161, 388, 760, 1015, 1432 |
| TatI | WGTACW | 1 cut(s) | 501 |
| TauI | GCSGC | 6 cut(s) | 424, 499, 687, 752, 1221, 1294 |
| TfiI | GAWTC | 5 cut(s) | 4, 58, 184, 304, 1201 |
| TseFI | GTSAC | 4 cut(s) | 202, 259, 1064, 1351 |
| TseI | GCWGC | 4 cut(s) | 381, 445, 957, 1425 |
| Tsp45I | GTSAC | 4 cut(s) | 202, 259, 1064, 1351 |
| TspDTI | ATGAA | 5 cut(s) | 82, 521, 922, 1004, 1040 |
| TspGWI | ACGGA | 2 cut(s) | 496, 1047 |
| Tth111I | GACNNNGTC | 2 cut(s) | 850, 1004 |
| VpaK11BI | GGWCC | 2 cut(s) | 877, 1206 |
| XapI | RAATTY | 4 cut(s) | 161, 388, 1015, 1432 |
| XmiI | GTMKAC | 1 cut(s) | 1008 |
| XmnI | GAANNNNTTC | 1 cut(s) | 285 |
| XspI | CTAG | 2 cut(s) | 590, 1088 |
| ZraI | GACGTC | 1 cut(s) | 1042 |