Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002535.1

Orthogroup ID

OG0001360

Physical Location & Seq

Genomic Coordinates Forward (+)

35383 .. 36294

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002535.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atgcatgccataaaagatcaaatgaaaattgacattaacggcgtgcatcttatgcacgccgtaaaagactataccagaaagggtattcacggcatgcccactcagtgcccgactttacttctctcctccttgaatcagctctgctggaatttggtgttgaaggttcagaaagccgataagcggcggattctgcggtcgtatttgcagcacatccacgtcgtcgccgacgagctggaccagcggaagcgagatttacgactgtacatgaacgtcgatgactccgccatggtcggcgacgacttccgcaacgcgcggtggaggactgtgtcgttcacgcacccatctacactggagatgattgccatggaagccgatctcaaatcgaagatcaagtccgatttggagtcgtttctcaaagccaagcactttatcgccgccatggccaatttcctcggctacgacgtctacgatctcgacatctctaaggttaaagacgactcggagttgaagatgcttcttttacagaccacaagcaagtcggtgatcctcatcgagcacctagatcggttcttcgccgagaaatcgacgactgtcagcttctcctgcatatcgaacttcatggacggcttgcttaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

212

Amino Acids

24.42

Weight (kDa)

8.36

Isoelectric Point (pI)

42.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46620
fragaria_vesca	FvH4_7g17220 FvH4_7g32500
malus_domestica	MD01G1085900.v1.1 MD01G1225700.v1.1 MD02G1229200.v1.1 MD07G1155000.v1.1 MD07G1296200.v1.1
prunus_persica	Prupe.2G193700_v2.0.a1 Prupe.2G315800_v2.0.a1
pyrus_communis	pycom01g23420 pycom07g15210 pycom07g26900
rosa_chinensis	RchiOBHm_Chr1g0360611 RchiOBHm_Chr1g0382341 RchiOBHm_Chr2g0086831 RchiOBHm_Chr2g0139501 RchiOBHm_Chr3g0458211 RchiOBHm_Chr3g0478421 RchiOBHm_Chr4g0427361
rosa_laevigata	RLG00000002572 RLG00000009827 RLG00000026185 RLG00000027795 RLG00000030781
rosa_multiflora	Rmu_sc0000110.1_g000040 Rmu_sc0001436.1_g000033 Rmu_sc0002188.1_g000003 Rmu_sc0002535.1_g000007 Rmu_sc0003020.1_g000016 Rmu_sc0003481.1_g000013 Rmu_sc0004697.1_g000002 Rmu_sc0007558.1_g000001 Rmu_sc0010192.1_g000001 Rmu_sc0015587.1_g000001 Rmu_sc0042341.1_g000002
rosa_roxburghii	Rroxscaffold_2G00093530 Rroxscaffold_4G00278180
rosa_rugosa	Rorug01G0280000 Rorug01G0433500 Rorug02G0149500 Rorug05G0571400
rosa_samantha	Rh1AG292200 Rh1BG257100 Rh1BG414500 Rh1CG274900 Rh1DG287000 Rh1DG446600 Rh5BG487600 Rh5CG511800
rosa_wichuraiana	Rw1G025870 Rw1G041280 Rw5G043520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	465
AccI	GTMKAC	1 cut(s)	465
AccII	CGCG	2 cut(s)	311, 313
AciI	CCGC	8 cut(s)	181, 184, 193, 241, 282, 304, 313, 435
AclWI	GGATC	1 cut(s)	538
AcoI	YGGCCR	1 cut(s)	441
AcsI	RAATTY	1 cut(s)	148
AcyI	GRCGYC	1 cut(s)	462
AdeI	CACNNNGTG	1 cut(s)	105
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	180
AgsI	TTSAA	3 cut(s)	133, 160, 508
AjiI	CACGTC	1 cut(s)	217
AluBI	AGCT	3 cut(s)	139, 232, 597
AluI	AGCT	3 cut(s)	139, 232, 597
Alw21I	GWGCWC	1 cut(s)	558
AlwI	GGATC	1 cut(s)	538
AoxI	GGCC	1 cut(s)	441
ApeKI	GCWGC	1 cut(s)	205
ApoI	RAATTY	1 cut(s)	148
ArsI	GACNNNNNNTTYG	2 cut(s)	377, 409
AspLEI	GCGC	1 cut(s)	313
AspS9I	GGNCC	1 cut(s)	235
AsuHPI	GGTGA	1 cut(s)	553
AvaII	GGWCC	1 cut(s)	235
BaeGI	GKGCMC	1 cut(s)	110
BalI	TGGCCA	1 cut(s)	443
Bbv12I	GWGCWC	1 cut(s)	558
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	1 cut(s)	349
BceAI	ACGGC	3 cut(s)	44, 55, 106
BcgI	CGANNNNNNTGC	2 cut(s)	545, 579
BfaI	CTAG	2 cut(s)	560, 637
BglI	GCCNNNNNGGC	1 cut(s)	440
BisI	GCNGC	3 cut(s)	182, 206, 435
BlsI	GCNGC	3 cut(s)	183, 207, 436
Bme18I	GGWCC	1 cut(s)	235
BmgBI	CACGTC	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	235
BmsI	GCATC	2 cut(s)	55, 501
BoxI	GACNNNNGTC	1 cut(s)	590
BpmI	CTGGAG	1 cut(s)	371
BsaBI	GATNNNNATC	1 cut(s)	548
BsaHI	GRCGYC	1 cut(s)	462
BsaJI	CCNNGG	4 cut(s)	285, 363, 438, 451
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse1I	ACTGG	1 cut(s)	354
Bse8I	GATNNNNATC	1 cut(s)	548
BseDI	CCNNGG	4 cut(s)	285, 363, 438, 451
BseGI	GGATG	1 cut(s)	210
BseJI	GATNNNNATC	1 cut(s)	548
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	116
BseNI	ACTGG	1 cut(s)	354
BseRI	GAGGAG	1 cut(s)	115
BseSI	GKGCMC	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	217
Bsh1236I	CGCG	2 cut(s)	311, 313
Bsh1285I	CGRYCG	1 cut(s)	197
BshFI	GGCC	1 cut(s)	443
BsiEI	CGRYCG	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	558
BslI	CCNNNNNNNGG	1 cut(s)	180
BsnI	GGCC	1 cut(s)	443
Bsp1286I	GDGCHC	2 cut(s)	110, 558
Bsp1407I	TGTACA	1 cut(s)	261
Bsp143I	GATC	6 cut(s)	16, 373, 387, 469, 543, 562
Bsp19I	CCATGG	3 cut(s)	285, 363, 438
BspACI	CCGC	8 cut(s)	181, 184, 193, 241, 282, 304, 313, 435
BspANI	GGCC	1 cut(s)	443
BspCNI	CTCAG	1 cut(s)	115
BspFNI	CGCG	2 cut(s)	311, 313
BspPI	GGATC	1 cut(s)	538
BsrGI	TGTACA	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	354
BssECI	CCNNGG	4 cut(s)	285, 363, 438, 451
BssMI	GATC	6 cut(s)	16, 373, 387, 469, 543, 562
BssNI	GRCGYC	1 cut(s)	462
BssT1I	CCWWGG	3 cut(s)	285, 363, 438
Bst4CI	ACNGT	3 cut(s)	261, 325, 592
BstACI	GRCGYC	1 cut(s)	462
BstAPI	GCANNNNNTGC	1 cut(s)	52
BstAUI	TGTACA	1 cut(s)	261
BstC8I	GCNNGC	5 cut(s)	6, 44, 57, 95, 629
BstDEI	CTNAG	2 cut(s)	102, 483
BstDSI	CCRYGG	3 cut(s)	285, 363, 438
BstF5I	GGATG	1 cut(s)	210
BstFNI	CGCG	2 cut(s)	311, 313
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	6 cut(s)	19, 376, 390, 472, 546, 565
BstMBI	GATC	6 cut(s)	16, 373, 387, 469, 543, 562
BstMCI	CGRYCG	1 cut(s)	197
BstMWI	GCNNNNNNNGC	6 cut(s)	52, 190, 238, 368, 440, 603
BstNSI	RCATGY	2 cut(s)	8, 97
BstPAI	GACNNNNGTC	1 cut(s)	590
BstSLI	GKGCMC	1 cut(s)	110
BstUI	CGCG	2 cut(s)	311, 313
BstV1I	GCAGC	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	443
BtgI	CCRYGG	3 cut(s)	285, 363, 438
BtrI	CACGTC	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	210
BtsIMutI	CAGTG	2 cut(s)	110, 347
Cac8I	GCNNGC	5 cut(s)	6, 44, 57, 95, 629
CfoI	GCGC	1 cut(s)	313
Cfr13I	GGNCC	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	7 cut(s)	5, 94, 265, 286, 364, 439, 619
CviJI	RGCY	9 cut(s)	139, 173, 232, 371, 419, 443, 456, 597, 627
CviKI_1	RGCY	9 cut(s)	139, 173, 232, 371, 419, 443, 456, 597, 627
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	2 cut(s)	102, 483
DpnI	GATC	6 cut(s)	18, 375, 389, 471, 545, 564
DpnII	GATC	6 cut(s)	16, 373, 387, 469, 543, 562
DraIII	CACNNNGTG	1 cut(s)	105
EaeI	YGGCCR	1 cut(s)	441
EciI	GGCGGA	2 cut(s)	199, 271
Eco130I	CCWWGG	3 cut(s)	285, 363, 438
Eco47I	GGWCC	1 cut(s)	235
EcoT14I	CCWWGG	3 cut(s)	285, 363, 438
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	3 cut(s)	285, 363, 438
FaeI	CATG	7 cut(s)	8, 97, 268, 289, 367, 442, 622
FatI	CATG	7 cut(s)	4, 93, 264, 285, 363, 438, 618
FblI	GTMKAC	1 cut(s)	465
Fnu4HI	GCNGC	3 cut(s)	182, 206, 435
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	3 cut(s)	182, 206, 435
FspBI	CTAG	2 cut(s)	560, 637
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	3 cut(s)	182, 206, 435
GsuI	CTGGAG	1 cut(s)	371
HaeIII	GGCC	1 cut(s)	443
HhaI	GCGC	1 cut(s)	313
Hin1I	GRCGYC	1 cut(s)	462
Hin1II	CATG	7 cut(s)	8, 97, 268, 289, 367, 442, 622
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HinfI	GANTC	5 cut(s)	133, 187, 278, 404, 497
HphI	GGTGA	1 cut(s)	553
Hpy166II	GTNNAC	2 cut(s)	333, 466
Hpy188I	TCNGA	3 cut(s)	168, 397, 502
Hpy188III	TCNNGA	1 cut(s)	473
Hpy8I	GTNNAC	2 cut(s)	333, 466
Hpy99I	CGWCG	7 cut(s)	221, 224, 230, 275, 299, 464, 589
HpyAV	CCTTC	1 cut(s)	154
HpyCH4III	ACNGT	3 cut(s)	261, 325, 592
HpyCH4IV	ACGT	3 cut(s)	216, 270, 462
HpyCH4V	TGCA	5 cut(s)	4, 46, 55, 205, 606
HpyF10VI	GCNNNNNNNGC	6 cut(s)	52, 190, 238, 368, 440, 603
HpyF3I	CTNAG	2 cut(s)	102, 483
HpySE526I	ACGT	3 cut(s)	216, 270, 462
Hsp92I	GRCGYC	1 cut(s)	462
Hsp92II	CATG	7 cut(s)	8, 97, 268, 289, 367, 442, 622
HspAI	GCGC	1 cut(s)	311
Kzo9I	GATC	6 cut(s)	16, 373, 387, 469, 543, 562
LpnPI	CCDG	6 cut(s)	88, 130, 218, 251, 335, 616
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	2 cut(s)	55, 501
MaeI	CTAG	2 cut(s)	560, 637
MaeII	ACGT	3 cut(s)	216, 270, 462
MalI	GATC	6 cut(s)	18, 375, 389, 471, 545, 564
MboI	GATC	6 cut(s)	16, 373, 387, 469, 543, 562
MboII	GAAGA	3 cut(s)	397, 520, 562
MhlI	GDGCHC	2 cut(s)	110, 558
MlsI	TGGCCA	1 cut(s)	443
MluCI	AATT	3 cut(s)	27, 148, 445
MluNI	TGGCCA	1 cut(s)	443
MlyI	GAGTC	3 cut(s)	272, 413, 491
MnlI	CCTC	4 cut(s)	136, 312, 461, 557
Mox20I	TGGCCA	1 cut(s)	443
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	443
MseI	TTAA	3 cut(s)	36, 489, 633
Msp20I	TGGCCA	1 cut(s)	443
MspA1I	CMGCKG	1 cut(s)	241
MvnI	CGCG	2 cut(s)	311, 313
MwoI	GCNNNNNNNGC	6 cut(s)	52, 190, 238, 368, 440, 603
NcoI	CCATGG	3 cut(s)	285, 363, 438
NdeII	GATC	6 cut(s)	16, 373, 387, 469, 543, 562
NlaIII	CATG	7 cut(s)	8, 97, 268, 289, 367, 442, 622
NmeAIII	GCCGAG	2 cut(s)	432, 601
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	8, 97
PaeI	GCATGC	2 cut(s)	8, 97
PcsI	WCGNNNNNNNCGW	4 cut(s)	222, 225, 459, 465
PfeI	GAWTC	2 cut(s)	133, 187
PflFI	GACNNNGTC	1 cut(s)	325
PkrI	GCNGC	3 cut(s)	183, 207, 436
PleI	GAGTC	3 cut(s)	272, 412, 491
PpsI	GAGTC	3 cut(s)	272, 412, 491
PshAI	GACNNNNGTC	1 cut(s)	590
PspPI	GGNCC	1 cut(s)	235
PsyI	GACNNNGTC	1 cut(s)	325
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SaqAI	TTAA	3 cut(s)	36, 489, 633
SatI	GCNGC	3 cut(s)	182, 206, 435
Sau3AI	GATC	6 cut(s)	16, 373, 387, 469, 543, 562
Sau96I	GGNCC	1 cut(s)	235
SchI	GAGTC	3 cut(s)	272, 413, 491
SduI	GDGCHC	2 cut(s)	110, 558
SetI	ASST	9 cut(s)	141, 165, 219, 234, 273, 465, 489, 561, 599
SfaNI	GCATC	2 cut(s)	55, 501
SinI	GGWCC	1 cut(s)	235
SphI	GCATGC	2 cut(s)	8, 97
Sse9I	AATT	3 cut(s)	27, 148, 445
SsiI	CCGC	8 cut(s)	181, 184, 193, 241, 282, 304, 313, 435
SspMI	CTAG	2 cut(s)	560, 637
StyI	CCWWGG	3 cut(s)	285, 363, 438
TaaI	ACNGT	3 cut(s)	261, 325, 592
TaiI	ACGT	3 cut(s)	219, 273, 465
TaqI	TCGA	6 cut(s)	273, 383, 474, 552, 584, 611
TasI	AATT	3 cut(s)	27, 148, 445
TatI	WGTACW	1 cut(s)	261
TauI	GCSGC	2 cut(s)	184, 437
TfiI	GAWTC	2 cut(s)	133, 187
Tru1I	TTAA	3 cut(s)	36, 489, 633
Tru9I	TTAA	3 cut(s)	36, 489, 633
TscAI	CASTG	2 cut(s)	110, 354
TseI	GCWGC	1 cut(s)	205
TspDTI	ATGAA	3 cut(s)	38, 281, 607
TspRI	CASTG	2 cut(s)	110, 354
Tth111I	GACNNNGTC	1 cut(s)	325
VpaK11BI	GGWCC	1 cut(s)	235
XapI	RAATTY	1 cut(s)	148
XceI	RCATGY	2 cut(s)	8, 97
XmiI	GTMKAC	1 cut(s)	465
XspI	CTAG	2 cut(s)	560, 637
ZraI	GACGTC	1 cut(s)	463
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.