Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042341.1

Orthogroup ID

OG0001360

Physical Location & Seq

Genomic Coordinates Reverse (-)

3341 .. 3817

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042341.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atgacaagccttcatctcatagagaatcagctgtgctgcaaggtcaccgtttatctcaactcattgacctccattgaggactccgatttggagtcgtttctcaaagccaagcagtattacaaccgcctcggccgcatctggaagcgaagcttcttgctttacggcccctcctgcaccgggaaatccagcttcgtcgccgccatggccaatttcctcggctacgacgtctacgatctcgacctctccagggttaaagacgactcggagttgaagatgcttcttttacagaccacgagcaagacggtgatcctcaacgaggacctggatcggttcttcgccgagaaattgacgacggtcaacttctccggcatatcgaacttcatggacagcttgctcaaatcgtgttgcgctgaagagagagtcatgacgaggttgatgagattcagagcctctgcgcattcgttgtgctgggtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

158

Amino Acids

18.13

Weight (kDa)

7.57

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46620
fragaria_vesca	FvH4_7g17220 FvH4_7g32500
malus_domestica	MD01G1085900.v1.1 MD01G1225700.v1.1 MD02G1229200.v1.1 MD07G1155000.v1.1 MD07G1296200.v1.1
prunus_persica	Prupe.2G193700_v2.0.a1 Prupe.2G315800_v2.0.a1
pyrus_communis	pycom01g23420 pycom07g15210 pycom07g26900
rosa_chinensis	RchiOBHm_Chr1g0360611 RchiOBHm_Chr1g0382341 RchiOBHm_Chr2g0086831 RchiOBHm_Chr2g0139501 RchiOBHm_Chr3g0458211 RchiOBHm_Chr3g0478421 RchiOBHm_Chr4g0427361
rosa_laevigata	RLG00000002572 RLG00000009827 RLG00000026185 RLG00000027795 RLG00000030781
rosa_multiflora	Rmu_sc0000110.1_g000040 Rmu_sc0001436.1_g000033 Rmu_sc0002188.1_g000003 Rmu_sc0002535.1_g000007 Rmu_sc0003020.1_g000016 Rmu_sc0003481.1_g000013 Rmu_sc0004697.1_g000002 Rmu_sc0007558.1_g000001 Rmu_sc0010192.1_g000001 Rmu_sc0015587.1_g000001 Rmu_sc0042341.1_g000002
rosa_roxburghii	Rroxscaffold_2G00093530 Rroxscaffold_4G00278180
rosa_rugosa	Rorug01G0280000 Rorug01G0433500 Rorug02G0149500 Rorug05G0571400
rosa_samantha	Rh1AG292200 Rh1BG257100 Rh1BG414500 Rh1CG274900 Rh1DG287000 Rh1DG446600 Rh5BG487600 Rh5CG511800
rosa_wichuraiana	Rw1G025870 Rw1G041280 Rw5G043520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	228
Acc16I	TGCGCA	1 cut(s)	456
AccI	GTMKAC	1 cut(s)	228
AciI	CCGC	3 cut(s)	124, 133, 198
AclWI	GGATC	2 cut(s)	301, 333
AcoI	YGGCCR	2 cut(s)	130, 204
AcuI	CTGAAG	1 cut(s)	432
AcyI	GRCGYC	1 cut(s)	225
AfiI	CCNNNNNNNGG	3 cut(s)	177, 247, 316
AgsI	TTSAA	1 cut(s)	271
AjnI	CCWGG	2 cut(s)	245, 321
AluBI	AGCT	4 cut(s)	31, 150, 189, 390
AluI	AGCT	4 cut(s)	31, 150, 189, 390
AlwI	GGATC	2 cut(s)	301, 333
AoxI	GGCC	3 cut(s)	130, 163, 204
ApeKI	GCWGC	1 cut(s)	36
AspLEI	GCGC	2 cut(s)	410, 457
AspS9I	GGNCC	2 cut(s)	164, 319
AsuC2I	CCSGG	1 cut(s)	178
AsuHPI	GGTGA	2 cut(s)	37, 316
AvaII	GGWCC	1 cut(s)	319
BalI	TGGCCA	1 cut(s)	206
BauI	CACGAG	1 cut(s)	292
BbvI	GCAGC	1 cut(s)	23
BceAI	ACGGC	1 cut(s)	178
BciT130I	CCWGG	2 cut(s)	247, 323
BcnI	CCSGG	1 cut(s)	178
BglI	GCCNNNNNGGC	1 cut(s)	203
BisI	GCNGC	3 cut(s)	37, 133, 198
BlsI	GCNGC	3 cut(s)	38, 134, 199
Bme1390I	CCNGG	3 cut(s)	178, 247, 323
Bme18I	GGWCC	1 cut(s)	319
BmgT120I	GGNCC	2 cut(s)	164, 319
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	3 cut(s)	178, 247, 323
BmsI	GCATC	2 cut(s)	144, 264
BoxI	GACNNNNGTC	1 cut(s)	353
BpmI	CTGGAG	1 cut(s)	229
BpuMI	CCSGG	1 cut(s)	178
BsaHI	GRCGYC	1 cut(s)	225
BsaJI	CCNNGG	4 cut(s)	127, 201, 214, 246
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	3 cut(s)	177, 247, 316
BseBI	CCWGG	2 cut(s)	247, 323
BseDI	CCNNGG	4 cut(s)	127, 201, 214, 246
BseLI	CCNNNNNNNGG	3 cut(s)	177, 247, 316
BseX3I	CGGCCG	1 cut(s)	130
BseXI	GCAGC	1 cut(s)	23
BseYI	CCCAGC	1 cut(s)	468
BsgI	GTGCAG	1 cut(s)	157
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	3 cut(s)	132, 165, 206
BsiEI	CGRYCG	1 cut(s)	133
BsiSI	CCGG	2 cut(s)	177, 366
BslI	CCNNNNNNNGG	3 cut(s)	177, 247, 316
BsmI	GAATGC	1 cut(s)	457
BsnI	GGCC	3 cut(s)	132, 165, 206
Bsp143I	GATC	3 cut(s)	232, 306, 325
Bsp19I	CCATGG	1 cut(s)	201
BspACI	CCGC	3 cut(s)	124, 133, 198
BspANI	GGCC	3 cut(s)	132, 165, 206
BspHI	TCATGA	1 cut(s)	423
BspLI	GGNNCC	1 cut(s)	166
BspPI	GGATC	2 cut(s)	301, 333
BssECI	CCNNGG	4 cut(s)	127, 201, 214, 246
BssMI	GATC	3 cut(s)	232, 306, 325
BssNI	GRCGYC	1 cut(s)	225
BssSI	CACGAG	1 cut(s)	292
BssT1I	CCWWGG	1 cut(s)	201
Bst2BI	CACGAG	1 cut(s)	292
Bst2UI	CCWGG	2 cut(s)	247, 323
Bst4CI	ACNGT	3 cut(s)	49, 304, 355
Bst6I	CTCTTC	1 cut(s)	408
BstACI	GRCGYC	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	392
BstDSI	CCRYGG	1 cut(s)	201
BstEII	GGTNACC	1 cut(s)	43
BstENI	CCTNNNNNAGG	1 cut(s)	314
BstHHI	GCGC	2 cut(s)	410, 457
BstKTI	GATC	3 cut(s)	235, 309, 328
BstMBI	GATC	3 cut(s)	232, 306, 325
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	3 cut(s)	132, 171, 203
BstNI	CCWGG	2 cut(s)	247, 323
BstPAI	GACNNNNGTC	1 cut(s)	353
BstPI	GGTNACC	1 cut(s)	43
BstSCI	CCNGG	3 cut(s)	176, 245, 321
BstV1I	GCAGC	1 cut(s)	23
BstZI	CGGCCG	1 cut(s)	130
BsuRI	GGCC	3 cut(s)	132, 165, 206
BtgI	CCRYGG	1 cut(s)	201
Cac8I	GCNNGC	1 cut(s)	392
CciI	TCATGA	1 cut(s)	423
CfoI	GCGC	2 cut(s)	410, 457
Cfr13I	GGNCC	2 cut(s)	164, 319
CviAII	CATG	3 cut(s)	202, 382, 424
DpnI	GATC	3 cut(s)	234, 308, 327
DpnII	GATC	3 cut(s)	232, 306, 325
EaeI	YGGCCR	2 cut(s)	130, 204
EagI	CGGCCG	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
EclXI	CGGCCG	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	319
Eco52I	CGGCCG	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	432
Eco91I	GGTNACC	1 cut(s)	43
EcoNI	CCTNNNNNAGG	1 cut(s)	314
EcoO109I	RGGNCCY	1 cut(s)	319
EcoO65I	GGTNACC	1 cut(s)	43
EcoRII	CCWGG	2 cut(s)	245, 321
EcoT14I	CCWWGG	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	3 cut(s)	205, 385, 427
FaiI	YATR	6 cut(s)	20, 203, 371, 383, 425, 475
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FatI	CATG	3 cut(s)	201, 381, 423
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	3 cut(s)	37, 133, 198
Fsp4HI	GCNGC	3 cut(s)	37, 133, 198
FspI	TGCGCA	1 cut(s)	456
GlaI	GCGC	2 cut(s)	409, 456
GluI	GCNGC	3 cut(s)	37, 133, 198
GsaI	CCCAGC	1 cut(s)	472
GsuI	CTGGAG	1 cut(s)	229
HaeIII	GGCC	3 cut(s)	132, 165, 206
HapII	CCGG	2 cut(s)	177, 366
HhaI	GCGC	2 cut(s)	410, 457
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	3 cut(s)	205, 385, 427
Hin6I	GCGC	2 cut(s)	408, 455
HinP1I	GCGC	2 cut(s)	408, 455
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HindIII	AAGCTT	1 cut(s)	148
HinfI	GANTC	6 cut(s)	25, 80, 92, 260, 420, 441
HpaII	CCGG	2 cut(s)	177, 366
HphI	GGTGA	2 cut(s)	37, 316
Hpy166II	GTNNAC	2 cut(s)	229, 358
Hpy188I	TCNGA	3 cut(s)	85, 265, 446
Hpy188III	TCNNGA	3 cut(s)	139, 236, 424
Hpy8I	GTNNAC	2 cut(s)	229, 358
Hpy99I	CGWCG	3 cut(s)	197, 227, 355
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	3 cut(s)	49, 304, 355
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	2 cut(s)	39, 174
HpyF10VI	GCNNNNNNNGC	3 cut(s)	132, 171, 203
HpySE526I	ACGT	1 cut(s)	225
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	3 cut(s)	205, 385, 427
HspAI	GCGC	2 cut(s)	408, 455
Kzo9I	GATC	3 cut(s)	232, 306, 325
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	2 cut(s)	144, 264
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	3 cut(s)	234, 308, 327
MboI	GATC	3 cut(s)	232, 306, 325
MboII	GAAGA	3 cut(s)	283, 325, 425
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	2 cut(s)	208, 344
MluNI	TGGCCA	1 cut(s)	206
MlyI	GAGTC	4 cut(s)	74, 101, 254, 429
Mox20I	TGGCCA	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	206
MseI	TTAA	1 cut(s)	252
Msp20I	TGGCCA	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	31
MspI	CCGG	2 cut(s)	177, 366
MspR9I	CCNGG	3 cut(s)	178, 247, 323
Mva1269I	GAATGC	1 cut(s)	457
MvaI	CCWGG	2 cut(s)	247, 323
MwoI	GCNNNNNNNGC	3 cut(s)	132, 171, 203
NciI	CCSGG	1 cut(s)	178
NcoI	CCATGG	1 cut(s)	201
NdeII	GATC	3 cut(s)	232, 306, 325
NlaIII	CATG	3 cut(s)	205, 385, 427
NlaIV	GGNNCC	1 cut(s)	166
NmeAIII	GCCGAG	3 cut(s)	108, 195, 364
NmuCI	GTSAC	1 cut(s)	43
NsbI	TGCGCA	1 cut(s)	456
PagI	TCATGA	1 cut(s)	423
PcsI	WCGNNNNNNNCGW	2 cut(s)	222, 228
PctI	GAATGC	1 cut(s)	457
PfeI	GAWTC	2 cut(s)	25, 441
PkrI	GCNGC	3 cut(s)	38, 134, 199
PleI	GAGTC	4 cut(s)	74, 100, 254, 428
PpsI	GAGTC	4 cut(s)	74, 100, 254, 428
PpuMI	RGGWCCY	1 cut(s)	319
PshAI	GACNNNNGTC	1 cut(s)	353
Psp5II	RGGWCCY	1 cut(s)	319
Psp6I	CCWGG	2 cut(s)	245, 321
PspEI	GGTNACC	1 cut(s)	43
PspFI	CCCAGC	1 cut(s)	468
PspGI	CCWGG	2 cut(s)	245, 321
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	2 cut(s)	164, 319
PspPPI	RGGWCCY	1 cut(s)	319
PvuII	CAGCTG	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	3 cut(s)	37, 133, 198
Sau3AI	GATC	3 cut(s)	232, 306, 325
Sau96I	GGNCC	2 cut(s)	164, 319
SchI	GAGTC	4 cut(s)	74, 101, 254, 429
ScrFI	CCNGG	3 cut(s)	178, 247, 323
SfaNI	GCATC	2 cut(s)	144, 264
SinI	GGWCC	1 cut(s)	319
Sse9I	AATT	2 cut(s)	208, 344
SsiI	CCGC	3 cut(s)	124, 133, 198
StyD4I	CCNGG	3 cut(s)	176, 245, 321
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	3 cut(s)	49, 304, 355
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	2 cut(s)	237, 374
TasI	AATT	2 cut(s)	208, 344
TauI	GCSGC	2 cut(s)	135, 200
TfiI	GAWTC	2 cut(s)	25, 441
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	1 cut(s)	36
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	1 cut(s)	370
VpaK11BI	GGWCC	1 cut(s)	319
XagI	CCTNNNNNAGG	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	228
ZraI	GACGTC	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.