Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001360

Physical Location & Seq

Genomic Coordinates Reverse (-)

22479919 .. 22481367

Gene Structure 1449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1155000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGATTCTTTCCAATCCAATATTTCTTGTAATTGTAACAATCTGTATATTTGTAGCAATCCGTGTGGCGCTTTACAGAACTGGGCTGGTTTACATCGTGAAGAAATGGTGGCTGCGGTTCGAGGACTGCTTCCATGTCTACCAATCGTTCAAAGTCCCCAAATTCAACGAGAGCATGCAGGAGAATCAGCTCTACGGACGAGTCACCGACTATCTCAACTCGCTCACCTCCATTGAAGAATCGGATTTCACCAACCTCGTCACCGGGAAAAACCCCAATGAAATTGTGCTCCAGCTCGACCCCAATCAGACTATCGAGGACGATTTCCTCGGCGCCAAGGTCATATGGCAAACAGAAGGCAGCGGCGCCGGTGGGAGTAGGAACCTAGTGTTGAAGGTTCGGAAAGCTGATAAGCGGCGGATTCTGCGGCCCTATTTACAACACATCCACGTCGTCGCCGACGAGCTCGAGCAGAAGAAACGGGAGTTGAAGCTTTACATGAACGTCGACGCGCCCGACAGAGCGTGGAAGCCAGTCCCCTTCACTCACCCGTCGACCTTGGAGACCATATCAATGGAGTCCGACCTTAAATCGAAAGTCAAATCCGATTTGGAGTCGTTTCTCAAGGCTAAGCAGTACTATCACCGACTGGGTCGGGTCTGGAAACGGAGCTTTCTGCTATACGGGCCGTCGGGCACCGGAAAATCGAGCTTCGTCGCCGCCATGGCCAATTTTCTCGAGTACGACGTGTACGATCTGGATCTCTCGCGTGTCAAAGACGACTCGGAGCTGAAGATTCTGCTGTTGCAGACGACAACAAAATCGGTCATTGTGATCGAGGACTTGGACCGATATTTAGCCGAGAAACCCGCGGGTCTGAGCTTTTCGGGTATATCGAATTTCATGGACGGGCTGTTGAATTCATGCTGCGCCGAGGAGAGAGTCATGGTGTTCACGATGAATTCAAAAGACCACGTTGACCCGGCCTTTCTTCGACCGGGTCGGATCGACGTCCACATCCACTTTCCACTCTGCGATTTCGGAGCATTCAAAAATCTGGCGACGAGTTATCTCGGGGTGAAGGAGCACAAGCTCTTCCCGCAGGTGGAGGAGATTTTCCTAAGCGGGTCGAGTTTGAGTCCGGCGGAGATCGGCGAGTTGATGATCGCGAACCGCAACTCGCCGAGTCGGGCGATTAAGTCGGTCATCACGGCTTTGCAGACGGACGGCGATGGGAGGGGCGCGGGAGTGTTCGGAAGGCGGGTTGGGTTTGATACCGGGTCGAGAAAATCCGAATCGGTTGAACCCGGCGGGGCGATTTGTGGGGAAGGTGGTGTTCCTGCGGTTAGGGATATTAGGAAGTTGTATGGGTTCTTGAGGATGAAAAGCAGCAGGAGCCCCTCTCATTCTCAGTCGTTCGATGCGGATTCGGCGCACAGGGAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

483

Amino Acids

54.17

Weight (kDa)

8.34

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	31 - 117	4.6e-11	Domain associated at C-terminal with AAA
AAA	PF00004	226 - 344	3.2e-14	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	345 - 408	5e-11	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46620
fragaria_vesca	FvH4_7g17220 FvH4_7g32500
malus_domestica	MD01G1085900.v1.1 MD01G1225700.v1.1 MD02G1229200.v1.1 MD07G1155000.v1.1 MD07G1296200.v1.1
prunus_persica	Prupe.2G193700_v2.0.a1 Prupe.2G315800_v2.0.a1
pyrus_communis	pycom01g23420 pycom07g15210 pycom07g26900
rosa_chinensis	RchiOBHm_Chr1g0360611 RchiOBHm_Chr1g0382341 RchiOBHm_Chr2g0086831 RchiOBHm_Chr2g0139501 RchiOBHm_Chr3g0458211 RchiOBHm_Chr3g0478421 RchiOBHm_Chr4g0427361
rosa_laevigata	RLG00000002572 RLG00000009827 RLG00000026185 RLG00000027795 RLG00000030781
rosa_multiflora	Rmu_sc0000110.1_g000040 Rmu_sc0001436.1_g000033 Rmu_sc0002188.1_g000003 Rmu_sc0002535.1_g000007 Rmu_sc0003020.1_g000016 Rmu_sc0003481.1_g000013 Rmu_sc0004697.1_g000002 Rmu_sc0007558.1_g000001 Rmu_sc0010192.1_g000001 Rmu_sc0015587.1_g000001 Rmu_sc0042341.1_g000002
rosa_roxburghii	Rroxscaffold_2G00093530 Rroxscaffold_4G00278180
rosa_rugosa	Rorug01G0280000 Rorug01G0433500 Rorug02G0149500 Rorug05G0571400
rosa_samantha	Rh1AG292200 Rh1BG257100 Rh1BG414500 Rh1CG274900 Rh1DG287000 Rh1DG446600 Rh5BG487600 Rh5CG511800
rosa_wichuraiana	Rw1G025870 Rw1G041280 Rw5G043520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1093
AatII	GACGTC	1 cut(s)	1014
Acc36I	ACCTGC	1 cut(s)	1093
AccB1I	GGYRCC	3 cut(s)	332, 365, 695
AccI	GTMKAC	3 cut(s)	138, 507, 554
AccII	CGCG	5 cut(s)	512, 769, 872, 1169, 1244
AclWI	GGATC	2 cut(s)	768, 1013
AcoI	YGGCCR	1 cut(s)	726
AcsI	RAATTY	4 cut(s)	161, 898, 919, 961
AcuI	CTGAAG	1 cut(s)	812
AcyI	GRCGYC	3 cut(s)	333, 366, 1011
AfaI	GTAC	3 cut(s)	638, 743, 752
AfiI	CCNNNNNNNGG	1 cut(s)	1105
AflIII	ACRYGT	1 cut(s)	747
AgsI	TTSAA	9 cut(s)	151, 166, 236, 394, 490, 919, 966, 1051, 1304
AjiI	CACGTC	2 cut(s)	451, 748
Alw21I	GWGCWC	3 cut(s)	291, 468, 1089
Alw26I	GTCTC	1 cut(s)	557
AlwI	GGATC	2 cut(s)	768, 1013
Ama87I	CYCGRG	3 cut(s)	467, 737, 1073
AoxI	GGCC	4 cut(s)	428, 686, 726, 984
ApeKI	GCWGC	4 cut(s)	112, 360, 927, 1389
ApoI	RAATTY	4 cut(s)	161, 898, 919, 961
AspLEI	GCGC	7 cut(s)	70, 335, 368, 514, 932, 1244, 1435
AspS9I	GGNCC	3 cut(s)	429, 686, 847
AsuC2I	CCSGG	5 cut(s)	265, 983, 999, 1279, 1308
AsuHPI	GGTGA	7 cut(s)	196, 217, 241, 253, 539, 635, 1090
AvaI	CYCGRG	3 cut(s)	467, 737, 1073
AvaII	GGWCC	1 cut(s)	847
BaeGI	GKGCMC	1 cut(s)	698
BalI	TGGCCA	1 cut(s)	728
BanI	GGYRCC	3 cut(s)	332, 365, 695
BanII	GRGCYC	2 cut(s)	468, 1400
Bbv12I	GWGCWC	3 cut(s)	291, 468, 1089
BbvI	GCAGC	4 cut(s)	99, 372, 914, 1401
BccI	CCATC	1 cut(s)	1226
BceAI	ACGGC	3 cut(s)	673, 1227, 1243
BcnI	CCSGG	5 cut(s)	265, 983, 999, 1279, 1308
BcoDI	GTCTC	1 cut(s)	557
BfaI	CTAG	1 cut(s)	386
BfoI	RGCGCY	3 cut(s)	71, 336, 369
BfuAI	ACCTGC	1 cut(s)	1093
BglI	GCCNNNNNGGC	1 cut(s)	725
BisI	GCNGC	8 cut(s)	113, 361, 364, 416, 428, 720, 928, 1390
BlpI	GCTNAGC	1 cut(s)	630
BlsI	GCNGC	8 cut(s)	114, 362, 365, 417, 429, 721, 929, 1391
BmcAI	AGTACT	1 cut(s)	638
Bme1390I	CCNGG	5 cut(s)	265, 983, 999, 1279, 1308
Bme18I	GGWCC	1 cut(s)	847
BmeT110I	CYCGRG	3 cut(s)	467, 737, 1073
BmgBI	CACGTC	2 cut(s)	451, 748
BmgT120I	GGNCC	3 cut(s)	429, 686, 847
BmiI	GGNNCC	5 cut(s)	334, 367, 383, 697, 1397
BmrFI	CCNGG	5 cut(s)	265, 983, 999, 1279, 1308
BmrI	ACTGGG	2 cut(s)	90, 659
BmsI	GCATC	1 cut(s)	1411
BmuI	ACTGGG	2 cut(s)	90, 659
BplI	GAGNNNNNCTC	2 cut(s)	1387, 1419
BpmI	CTGGAG	1 cut(s)	275
Bpu10I	CCTNAGC	1 cut(s)	1121
Bpu1102I	GCTNAGC	1 cut(s)	630
BpuEI	CTTGAG	2 cut(s)	608, 1396
BpuMI	CCSGG	5 cut(s)	265, 983, 999, 1279, 1308
BsaBI	GATNNNNATC	1 cut(s)	759
BsaHI	GRCGYC	3 cut(s)	333, 366, 1011
BsaI	GGTCTC	1 cut(s)	557
BsaJI	CCNNGG	6 cut(s)	328, 336, 558, 723, 870, 933
BsaWI	WCCGGW	1 cut(s)	698
Bsc4I	CCNNNNNNNGG	1 cut(s)	1105
Bse118I	RCCGGY	1 cut(s)	368
Bse1I	ACTGG	3 cut(s)	85, 533, 654
Bse8I	GATNNNNATC	1 cut(s)	759
BseDI	CCNNGG	6 cut(s)	328, 336, 558, 723, 870, 933
BseGI	GGATG	3 cut(s)	444, 1017, 1386
BseJI	GATNNNNATC	1 cut(s)	759
BseLI	CCNNNNNNNGG	1 cut(s)	1105
BseMII	CTCAG	2 cut(s)	869, 1424
BseNI	ACTGG	3 cut(s)	85, 533, 654
BseRI	GAGGAG	2 cut(s)	950, 1124
BseSI	GKGCMC	1 cut(s)	698
BseXI	GCAGC	4 cut(s)	99, 372, 914, 1401
Bsh1236I	CGCG	5 cut(s)	512, 769, 872, 1169, 1244
Bsh1285I	CGRYCG	1 cut(s)	998
BshFI	GGCC	4 cut(s)	430, 688, 728, 986
BshNI	GGYRCC	3 cut(s)	332, 365, 695
BsiEI	CGRYCG	1 cut(s)	998
BsiHKAI	GWGCWC	3 cut(s)	291, 468, 1089
BsiHKCI	CYCGRG	3 cut(s)	467, 737, 1073
BsiSI	CCGG	8 cut(s)	264, 369, 699, 983, 998, 1142, 1278, 1308
BslFI	GGGAC	2 cut(s)	140, 521
BslI	CCNNNNNNNGG	1 cut(s)	1105
BsmAI	GTCTC	1 cut(s)	557
BsmFI	GGGAC	2 cut(s)	140, 521
BsmI	GAATGC	1 cut(s)	1046
BsnI	GGCC	4 cut(s)	430, 688, 728, 986
Bso31I	GGTCTC	1 cut(s)	557
BsoBI	CYCGRG	3 cut(s)	467, 737, 1073
Bsp1286I	GDGCHC	5 cut(s)	291, 468, 698, 1089, 1400
Bsp143I	GATC	6 cut(s)	754, 760, 834, 1005, 1149, 1164
Bsp1720I	GCTNAGC	1 cut(s)	630
Bsp19I	CCATGG	1 cut(s)	723
Bsp68I	TCGCGA	1 cut(s)	1169
BspANI	GGCC	4 cut(s)	430, 688, 728, 986
BspCNI	CTCAG	2 cut(s)	870, 1423
BspFNI	CGCG	5 cut(s)	512, 769, 872, 1169, 1244
BspLI	GGNNCC	5 cut(s)	334, 367, 383, 697, 1397
BspMI	ACCTGC	1 cut(s)	1093
BspPI	GGATC	2 cut(s)	768, 1013
BspQI	GCTCTTC	1 cut(s)	1100
BspT107I	GGYRCC	3 cut(s)	332, 365, 695
BspTNI	GGTCTC	1 cut(s)	557
BsrFI	RCCGGY	1 cut(s)	368
BsrI	ACTGG	3 cut(s)	85, 533, 654
BssAI	RCCGGY	1 cut(s)	368
BssECI	CCNNGG	6 cut(s)	328, 336, 558, 723, 870, 933
BssMI	GATC	6 cut(s)	754, 760, 834, 1005, 1149, 1164
BssNI	GRCGYC	3 cut(s)	333, 366, 1011
BssT1I	CCWWGG	3 cut(s)	336, 558, 723
Bst6I	CTCTTC	1 cut(s)	1100
BstACI	GRCGYC	3 cut(s)	333, 366, 1011
BstC8I	GCNNGC	1 cut(s)	176
BstDEI	CTNAG	4 cut(s)	630, 878, 1121, 1410
BstDSI	CCRYGG	2 cut(s)	723, 870
BstF5I	GGATG	3 cut(s)	444, 1017, 1386
BstFNI	CGCG	5 cut(s)	512, 769, 872, 1169, 1244
BstH2I	RGCGCY	3 cut(s)	71, 336, 369
BstHHI	GCGC	7 cut(s)	70, 335, 368, 514, 932, 1244, 1435
BstKTI	GATC	6 cut(s)	757, 763, 837, 1008, 1152, 1167
BstMAI	GTCTC	1 cut(s)	557
BstMBI	GATC	6 cut(s)	754, 760, 834, 1005, 1149, 1164
BstMCI	CGRYCG	1 cut(s)	998
BstMWI	GCNNNNNNNGC	6 cut(s)	424, 685, 725, 1099, 1395, 1430
BstNSI	RCATGY	1 cut(s)	178
BstSCI	CCNGG	5 cut(s)	263, 981, 997, 1277, 1306
BstSLI	GKGCMC	1 cut(s)	698
BstUI	CGCG	5 cut(s)	512, 769, 872, 1169, 1244
BstV1I	GCAGC	4 cut(s)	99, 372, 914, 1401
BstX2I	RGATCY	1 cut(s)	760
BstXI	CCANNNNNNTGG	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	760
BsuRI	GGCC	4 cut(s)	430, 688, 728, 986
BtgI	CCRYGG	2 cut(s)	723, 870
BtgZI	GCGATG	1 cut(s)	1245
BtrI	CACGTC	2 cut(s)	451, 748
BtsCI	GGATG	3 cut(s)	444, 1017, 1386
BtuMI	TCGCGA	1 cut(s)	1169
BveI	ACCTGC	1 cut(s)	1093
Cac8I	GCNNGC	1 cut(s)	176
CfoI	GCGC	7 cut(s)	70, 335, 368, 514, 932, 1244, 1435
Cfr10I	RCCGGY	1 cut(s)	368
Cfr13I	GGNCC	3 cut(s)	429, 686, 847
Cfr42I	CCGCGG	1 cut(s)	873
CseI	GACGC	1 cut(s)	518
Csp6I	GTAC	3 cut(s)	637, 742, 751
CspCI	CAANNNNNGTGG	2 cut(s)	45, 80
CviAII	CATG	7 cut(s)	134, 175, 499, 724, 904, 924, 946
CviQI	GTAC	3 cut(s)	637, 742, 751
DdeI	CTNAG	4 cut(s)	630, 878, 1121, 1410
DinI	GGCGCC	2 cut(s)	334, 367
DpnI	GATC	6 cut(s)	756, 762, 836, 1007, 1151, 1166
DpnII	GATC	6 cut(s)	754, 760, 834, 1005, 1149, 1164
EaeI	YGGCCR	1 cut(s)	726
Eam1104I	CTCTTC	1 cut(s)	1100
EarI	CTCTTC	1 cut(s)	1100
EciI	GGCGGA	2 cut(s)	433, 1160
Ecl136II	GAGCTC	1 cut(s)	466
Eco130I	CCWWGG	3 cut(s)	336, 558, 723
Eco24I	GRGCYC	2 cut(s)	468, 1400
Eco31I	GGTCTC	1 cut(s)	557
Eco47I	GGWCC	1 cut(s)	847
Eco53kI	GAGCTC	1 cut(s)	466
Eco57I	CTGAAG	1 cut(s)	812
Eco88I	CYCGRG	3 cut(s)	467, 737, 1073
EcoICRI	GAGCTC	1 cut(s)	466
EcoRI	GAATTC	2 cut(s)	919, 961
EcoT14I	CCWWGG	3 cut(s)	336, 558, 723
EcoT38I	GRGCYC	2 cut(s)	468, 1400
EgeI	GGCGCC	2 cut(s)	334, 367
EheI	GGCGCC	2 cut(s)	334, 367
ErhI	CCWWGG	3 cut(s)	336, 558, 723
FaeI	CATG	7 cut(s)	137, 178, 502, 727, 907, 927, 949
FaqI	GGGAC	2 cut(s)	140, 521
FatI	CATG	7 cut(s)	133, 174, 498, 723, 903, 923, 945
FauI	CCCGC	7 cut(s)	865, 877, 1107, 1118, 1237, 1254, 1304
FauNDI	CATATG	1 cut(s)	344
FblI	GTMKAC	3 cut(s)	138, 507, 554
Fnu4HI	GCNGC	8 cut(s)	113, 361, 364, 416, 428, 720, 928, 1390
FokI	GGATG	3 cut(s)	431, 1004, 1393
FriOI	GRGCYC	2 cut(s)	468, 1400
Fsp4HI	GCNGC	8 cut(s)	113, 361, 364, 416, 428, 720, 928, 1390
FspBI	CTAG	1 cut(s)	386
GlaI	GCGC	7 cut(s)	69, 334, 367, 513, 931, 1243, 1434
GluI	GCNGC	8 cut(s)	113, 361, 364, 416, 428, 720, 928, 1390
GsuI	CTGGAG	1 cut(s)	275
HaeII	RGCGCY	3 cut(s)	71, 336, 369
HaeIII	GGCC	4 cut(s)	430, 688, 728, 986
HapII	CCGG	8 cut(s)	264, 369, 699, 983, 998, 1142, 1278, 1308
HgaI	GACGC	1 cut(s)	518
HhaI	GCGC	7 cut(s)	70, 335, 368, 514, 932, 1244, 1435
Hin1I	GRCGYC	3 cut(s)	333, 366, 1011
Hin1II	CATG	7 cut(s)	137, 178, 502, 727, 907, 927, 949
Hin6I	GCGC	7 cut(s)	68, 333, 366, 512, 930, 1242, 1433
HinP1I	GCGC	7 cut(s)	68, 333, 366, 512, 930, 1242, 1433
HincII	GTYRAC	3 cut(s)	508, 555, 979
HindII	GTYRAC	3 cut(s)	508, 555, 979
HindIII	AAGCTT	1 cut(s)	491
HpaII	CCGG	8 cut(s)	264, 369, 699, 983, 998, 1142, 1278, 1308
HphI	GGTGA	7 cut(s)	196, 217, 241, 253, 539, 635, 1090
Hpy166II	GTNNAC	8 cut(s)	91, 139, 508, 555, 751, 954, 979, 1015
Hpy188III	TCNNGA	8 cut(s)	97, 661, 737, 758, 955, 1168, 1284, 1375
Hpy8I	GTNNAC	8 cut(s)	91, 139, 508, 555, 751, 954, 979, 1015
HpyAV	CCTTC	7 cut(s)	350, 388, 550, 1075, 1251, 1322, 1436
HpyCH4IV	ACGT	5 cut(s)	450, 504, 747, 975, 1011
HpyCH4V	TGCA	3 cut(s)	178, 808, 1219
HpyF10VI	GCNNNNNNNGC	6 cut(s)	424, 685, 725, 1099, 1395, 1430
HpyF3I	CTNAG	4 cut(s)	630, 878, 1121, 1410
HpySE526I	ACGT	5 cut(s)	450, 504, 747, 975, 1011
Hsp92I	GRCGYC	3 cut(s)	333, 366, 1011
Hsp92II	CATG	7 cut(s)	137, 178, 502, 727, 907, 927, 949
HspAI	GCGC	7 cut(s)	68, 333, 366, 512, 930, 1242, 1433
KasI	GGCGCC	2 cut(s)	332, 365
KspI	CCGCGG	1 cut(s)	873
Kzo9I	GATC	6 cut(s)	754, 760, 834, 1005, 1149, 1164
LguI	GCTCTTC	1 cut(s)	1100
LmnI	GCTCC	6 cut(s)	294, 669, 787, 1043, 1084, 1395
Lsp1109I	GCAGC	4 cut(s)	99, 372, 914, 1401
LweI	GCATC	1 cut(s)	1411
MaeI	CTAG	1 cut(s)	386
MaeII	ACGT	5 cut(s)	450, 504, 747, 975, 1011
MaeIII	GTNAC	3 cut(s)	34, 202, 259
MalI	GATC	6 cut(s)	756, 762, 836, 1007, 1151, 1166
MboI	GATC	6 cut(s)	754, 760, 834, 1005, 1149, 1164
MboII	GAAGA	6 cut(s)	112, 248, 487, 805, 983, 1087
MflI	RGATCY	1 cut(s)	760
MhlI	GDGCHC	5 cut(s)	291, 468, 698, 1089, 1400
MlsI	TGGCCA	1 cut(s)	728
MluCI	AATT	7 cut(s)	30, 161, 282, 730, 898, 919, 961
MluNI	TGGCCA	1 cut(s)	728
Mly113I	GGCGCC	2 cut(s)	333, 366
MlyI	GAGTC	7 cut(s)	210, 587, 623, 776, 951, 1147, 1195
MmeI	TCCRAC	2 cut(s)	606, 983
Mox20I	TGGCCA	1 cut(s)	728
MscI	TGGCCA	1 cut(s)	728
MseI	TTAA	2 cut(s)	588, 1197
MslI	CAYNNNNRTG	1 cut(s)	572
Msp20I	TGGCCA	1 cut(s)	728
MspA1I	CMGCKG	2 cut(s)	363, 872
MspI	CCGG	8 cut(s)	264, 369, 699, 983, 998, 1142, 1278, 1308
MspR9I	CCNGG	5 cut(s)	265, 983, 999, 1279, 1308
Mva1269I	GAATGC	1 cut(s)	1046
MvnI	CGCG	5 cut(s)	512, 769, 872, 1169, 1244
MwoI	GCNNNNNNNGC	6 cut(s)	424, 685, 725, 1099, 1395, 1430
NarI	GGCGCC	2 cut(s)	333, 366
NciI	CCSGG	5 cut(s)	265, 983, 999, 1279, 1308
NcoI	CCATGG	1 cut(s)	723
NdeI	CATATG	1 cut(s)	344
NdeII	GATC	6 cut(s)	754, 760, 834, 1005, 1149, 1164
NlaIII	CATG	7 cut(s)	137, 178, 502, 727, 907, 927, 949
NlaIV	GGNNCC	5 cut(s)	334, 367, 383, 697, 1397
NmeAIII	GCCGAG	4 cut(s)	309, 886, 958, 1209
NmuCI	GTSAC	2 cut(s)	202, 259
NruI	TCGCGA	1 cut(s)	1169
NspI	RCATGY	1 cut(s)	178
PaeI	GCATGC	1 cut(s)	178
PaeR7I	CTCGAG	2 cut(s)	467, 737
PaqCI	CACCTGC	1 cut(s)	1093
PciSI	GCTCTTC	1 cut(s)	1100
PcsI	WCGNNNNNNNCGW	6 cut(s)	456, 459, 513, 744, 750, 893
PctI	GAATGC	1 cut(s)	1046
PfeI	GAWTC	7 cut(s)	4, 184, 239, 421, 796, 1295, 1427
PflFI	GACNNNGTC	2 cut(s)	651, 999
PkrI	GCNGC	8 cut(s)	114, 362, 365, 417, 429, 721, 929, 1391
PleI	GAGTC	7 cut(s)	209, 586, 622, 776, 950, 1146, 1194
PluTI	GGCGCC	2 cut(s)	336, 369
PpsI	GAGTC	7 cut(s)	209, 586, 622, 776, 950, 1146, 1194
Psp124BI	GAGCTC	1 cut(s)	468
PspN4I	GGNNCC	5 cut(s)	334, 367, 383, 697, 1397
PspPI	GGNCC	3 cut(s)	429, 686, 847
PspXI	VCTCGAGB	1 cut(s)	467
PsuI	RGATCY	1 cut(s)	760
PsyI	GACNNNGTC	2 cut(s)	651, 999
RruI	TCGCGA	1 cut(s)	1169
RsaI	GTAC	3 cut(s)	638, 743, 752
RsaNI	GTAC	3 cut(s)	637, 742, 751
RseI	CAYNNNNRTG	1 cut(s)	572
SacI	GAGCTC	1 cut(s)	468
SacII	CCGCGG	1 cut(s)	873
SalI	GTCGAC	2 cut(s)	506, 553
SapI	GCTCTTC	1 cut(s)	1100
SaqAI	TTAA	2 cut(s)	588, 1197
SatI	GCNGC	8 cut(s)	113, 361, 364, 416, 428, 720, 928, 1390
Sau3AI	GATC	6 cut(s)	754, 760, 834, 1005, 1149, 1164
Sau96I	GGNCC	3 cut(s)	429, 686, 847
ScaI	AGTACT	1 cut(s)	638
SchI	GAGTC	7 cut(s)	210, 587, 623, 776, 951, 1147, 1195
ScrFI	CCNGG	5 cut(s)	265, 983, 999, 1279, 1308
SduI	GDGCHC	5 cut(s)	291, 468, 698, 1089, 1400
SfaNI	GCATC	1 cut(s)	1411
SfoI	GGCGCC	2 cut(s)	334, 367
Sfr274I	CTCGAG	2 cut(s)	467, 737
Sfr303I	CCGCGG	1 cut(s)	873
SgrAI	CRCCGGYG	1 cut(s)	368
SgrBI	CCGCGG	1 cut(s)	873
SgrDI	CGTCGACG	1 cut(s)	506
SinI	GGWCC	1 cut(s)	847
SlaI	CTCGAG	2 cut(s)	467, 737
SmiMI	CAYNNNNRTG	1 cut(s)	572
SmlI	CTYRAG	4 cut(s)	467, 623, 737, 1375
SmoI	CTYRAG	4 cut(s)	467, 623, 737, 1375
SphI	GCATGC	1 cut(s)	178
Sse9I	AATT	7 cut(s)	30, 161, 282, 730, 898, 919, 961
SspDI	GGCGCC	2 cut(s)	332, 365
SspI	AATATT	1 cut(s)	21
SspMI	CTAG	1 cut(s)	386
SstI	GAGCTC	1 cut(s)	468
StyD4I	CCNGG	5 cut(s)	263, 981, 997, 1277, 1306
StyI	CCWWGG	3 cut(s)	336, 558, 723
TaiI	ACGT	5 cut(s)	453, 507, 750, 978, 1014
TaqII	GACCGA	3 cut(s)	814, 864, 1192
TasI	AATT	7 cut(s)	30, 161, 282, 730, 898, 919, 961
TatI	WGTACW	1 cut(s)	636
TauI	GCSGC	4 cut(s)	366, 418, 430, 722
TfiI	GAWTC	7 cut(s)	4, 184, 239, 421, 796, 1295, 1427
Tru1I	TTAA	2 cut(s)	588, 1197
Tru9I	TTAA	2 cut(s)	588, 1197
TseFI	GTSAC	2 cut(s)	202, 259
TseI	GCWGC	4 cut(s)	112, 360, 927, 1389
Tsp45I	GTSAC	2 cut(s)	202, 259
TspDTI	ATGAA	6 cut(s)	294, 515, 892, 912, 974, 1397
TspGWI	ACGGA	4 cut(s)	50, 210, 682, 1238
Tth111I	GACNNNGTC	2 cut(s)	651, 999
VpaK11BI	GGWCC	1 cut(s)	847
XapI	RAATTY	4 cut(s)	161, 898, 919, 961
XceI	RCATGY	1 cut(s)	178
XhoI	CTCGAG	2 cut(s)	467, 737
XmiI	GTMKAC	3 cut(s)	138, 507, 554
XspI	CTAG	1 cut(s)	386
ZraI	GACGTC	1 cut(s)	1012
ZrmI	AGTACT	1 cut(s)	638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.