Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001360

Physical Location & Seq

Genomic Coordinates Forward (+)

36517884 .. 36518494

Gene Structure 611 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002572

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGAGAATCAGCTGTACTGCAAGGTCACCGTTTATCTCAACTCATTGACCTCCATTGAGGACTCCCATTTAGAGTCGTTTCTCAAAGCCAAGCAGTATTACAACCGACTCGGCCGCGTCTGGAAGCGAAGCTTCTTGCTTTACGGCCCCTCCGGCACCGGGAAATCCAGCTTCGTCGCCGCTATGGCCAATTTCCTCGGCTACGACGTCTACGATCTCGACCTCTCTAGGGTTAAAGACGACTTGGAGTTGAAGATGCTTCTTTTACAGACCACGAGCAAGTCGGTGATCCTCATTGAGGACTTGGATCGGTTCTTCGCCGAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

110

Amino Acids

12.61

Weight (kDa)

6.56

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	46 - 108	7.1e-09	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46620
fragaria_vesca	FvH4_7g17220 FvH4_7g32500
malus_domestica	MD01G1085900.v1.1 MD01G1225700.v1.1 MD02G1229200.v1.1 MD07G1155000.v1.1 MD07G1296200.v1.1
prunus_persica	Prupe.2G193700_v2.0.a1 Prupe.2G315800_v2.0.a1
pyrus_communis	pycom01g23420 pycom07g15210 pycom07g26900
rosa_chinensis	RchiOBHm_Chr1g0360611 RchiOBHm_Chr1g0382341 RchiOBHm_Chr2g0086831 RchiOBHm_Chr2g0139501 RchiOBHm_Chr3g0458211 RchiOBHm_Chr3g0478421 RchiOBHm_Chr4g0427361
rosa_laevigata	RLG00000002572 RLG00000009827 RLG00000026185 RLG00000027795 RLG00000030781
rosa_multiflora	Rmu_sc0000110.1_g000040 Rmu_sc0001436.1_g000033 Rmu_sc0002188.1_g000003 Rmu_sc0002535.1_g000007 Rmu_sc0003020.1_g000016 Rmu_sc0003481.1_g000013 Rmu_sc0004697.1_g000002 Rmu_sc0007558.1_g000001 Rmu_sc0010192.1_g000001 Rmu_sc0015587.1_g000001 Rmu_sc0042341.1_g000002
rosa_roxburghii	Rroxscaffold_2G00093530 Rroxscaffold_4G00278180
rosa_rugosa	Rorug01G0280000 Rorug01G0433500 Rorug02G0149500 Rorug05G0571400
rosa_samantha	Rh1AG292200 Rh1BG257100 Rh1BG414500 Rh1CG274900 Rh1DG287000 Rh1DG446600 Rh5BG487600 Rh5CG511800
rosa_wichuraiana	Rw1G025870 Rw1G041280 Rw5G043520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	155
AccI	GTMKAC	1 cut(s)	210
AccII	CGCG	1 cut(s)	117
AciI	CCGC	2 cut(s)	115, 180
AclWI	GGATC	2 cut(s)	283, 315
AcoI	YGGCCR	2 cut(s)	112, 186
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	3 cut(s)	159, 229, 298
AgsI	TTSAA	1 cut(s)	253
AluBI	AGCT	3 cut(s)	13, 132, 171
AluI	AGCT	3 cut(s)	13, 132, 171
AlwI	GGATC	2 cut(s)	283, 315
AoxI	GGCC	3 cut(s)	112, 145, 186
AspS9I	GGNCC	1 cut(s)	146
AsuC2I	CCSGG	1 cut(s)	160
AsuHPI	GGTGA	2 cut(s)	19, 298
BalI	TGGCCA	1 cut(s)	188
BanI	GGYRCC	1 cut(s)	155
BauI	CACGAG	1 cut(s)	274
BceAI	ACGGC	1 cut(s)	160
BcnI	CCSGG	1 cut(s)	160
BfaI	CTAG	1 cut(s)	228
BglI	GCCNNNNNGGC	2 cut(s)	153, 185
BisI	GCNGC	2 cut(s)	115, 180
BlsI	GCNGC	2 cut(s)	116, 181
Bme1390I	CCNGG	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	2 cut(s)	148, 157
BmrFI	CCNGG	1 cut(s)	160
BmsI	GCATC	1 cut(s)	246
BpuMI	CCSGG	1 cut(s)	160
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	196
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	3 cut(s)	159, 229, 298
BseDI	CCNNGG	1 cut(s)	196
BseLI	CCNNNNNNNGG	3 cut(s)	159, 229, 298
BseX3I	CGGCCG	1 cut(s)	112
Bsh1236I	CGCG	1 cut(s)	117
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	3 cut(s)	114, 147, 188
BshNI	GGYRCC	1 cut(s)	155
BsiEI	CGRYCG	1 cut(s)	115
BsiSI	CCGG	2 cut(s)	153, 159
BslI	CCNNNNNNNGG	3 cut(s)	159, 229, 298
BsnI	GGCC	3 cut(s)	114, 147, 188
Bsp143I	GATC	3 cut(s)	214, 288, 307
BspACI	CCGC	2 cut(s)	115, 180
BspANI	GGCC	3 cut(s)	114, 147, 188
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	148, 157
BspPI	GGATC	2 cut(s)	283, 315
BspT107I	GGYRCC	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	3 cut(s)	214, 288, 307
BssNI	GRCGYC	1 cut(s)	207
BssSI	CACGAG	1 cut(s)	274
Bst2BI	CACGAG	1 cut(s)	274
Bst4CI	ACNGT	1 cut(s)	31
BstACI	GRCGYC	1 cut(s)	207
BstEII	GGTNACC	1 cut(s)	25
BstENI	CCTNNNNNAGG	1 cut(s)	296
BstFNI	CGCG	1 cut(s)	117
BstKTI	GATC	3 cut(s)	217, 291, 310
BstMBI	GATC	3 cut(s)	214, 288, 307
BstMCI	CGRYCG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	2 cut(s)	153, 185
BstPI	GGTNACC	1 cut(s)	25
BstSCI	CCNGG	1 cut(s)	158
BstUI	CGCG	1 cut(s)	117
BstZI	CGGCCG	1 cut(s)	112
BsuRI	GGCC	3 cut(s)	114, 147, 188
Cfr13I	GGNCC	1 cut(s)	146
CseI	GACGC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	16
CviJI	RGCY	8 cut(s)	13, 89, 114, 132, 147, 171, 188, 201
CviKI_1	RGCY	8 cut(s)	13, 89, 114, 132, 147, 171, 188, 201
CviQI	GTAC	1 cut(s)	16
DpnI	GATC	3 cut(s)	216, 290, 309
DpnII	GATC	3 cut(s)	214, 288, 307
EaeI	YGGCCR	2 cut(s)	112, 186
EagI	CGGCCG	1 cut(s)	112
EclXI	CGGCCG	1 cut(s)	112
Eco52I	CGGCCG	1 cut(s)	112
Eco91I	GGTNACC	1 cut(s)	25
EcoNI	CCTNNNNNAGG	1 cut(s)	296
EcoO65I	GGTNACC	1 cut(s)	25
FaiI	YATR	1 cut(s)	185
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	2 cut(s)	115, 180
Fsp4HI	GCNGC	2 cut(s)	115, 180
FspBI	CTAG	1 cut(s)	228
GluI	GCNGC	2 cut(s)	115, 180
HaeIII	GGCC	3 cut(s)	114, 147, 188
HapII	CCGG	2 cut(s)	153, 159
HgaI	GACGC	1 cut(s)	106
Hin1I	GRCGYC	1 cut(s)	207
HindIII	AAGCTT	1 cut(s)	130
HinfI	GANTC	4 cut(s)	7, 62, 74, 108
HpaII	CCGG	2 cut(s)	153, 159
HphI	GGTGA	2 cut(s)	19, 298
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188III	TCNNGA	2 cut(s)	121, 218
Hpy8I	GTNNAC	1 cut(s)	211
Hpy99I	CGWCG	2 cut(s)	179, 209
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	1 cut(s)	21
HpyF10VI	GCNNNNNNNGC	2 cut(s)	153, 185
HpySE526I	ACGT	1 cut(s)	207
Hsp92I	GRCGYC	1 cut(s)	207
Kzo9I	GATC	3 cut(s)	214, 288, 307
LpnPI	CCDG	4 cut(s)	106, 166, 172, 181
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	3 cut(s)	216, 290, 309
MboI	GATC	3 cut(s)	214, 288, 307
MboII	GAAGA	2 cut(s)	265, 307
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	1 cut(s)	190
MluNI	TGGCCA	1 cut(s)	188
MlyI	GAGTC	3 cut(s)	56, 83, 102
MnlI	CCTC	7 cut(s)	52, 61, 160, 206, 233, 292, 302
Mox20I	TGGCCA	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	1 cut(s)	234
Msp20I	TGGCCA	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	2 cut(s)	153, 159
MspR9I	CCNGG	1 cut(s)	160
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	2 cut(s)	153, 185
NciI	CCSGG	1 cut(s)	160
NdeII	GATC	3 cut(s)	214, 288, 307
NlaIV	GGNNCC	2 cut(s)	148, 157
NmeAIII	GCCGAG	2 cut(s)	90, 177
NmuCI	GTSAC	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	2 cut(s)	204, 210
PfeI	GAWTC	1 cut(s)	7
PkrI	GCNGC	2 cut(s)	116, 181
PleI	GAGTC	3 cut(s)	56, 82, 102
PpsI	GAGTC	3 cut(s)	56, 82, 102
PspEI	GGTNACC	1 cut(s)	25
PspN4I	GGNNCC	2 cut(s)	148, 157
PspPI	GGNCC	1 cut(s)	146
PvuII	CAGCTG	1 cut(s)	13
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	2 cut(s)	115, 180
Sau3AI	GATC	3 cut(s)	214, 288, 307
Sau96I	GGNCC	1 cut(s)	146
SchI	GAGTC	3 cut(s)	56, 83, 102
ScrFI	CCNGG	1 cut(s)	160
SetI	ASST	7 cut(s)	15, 27, 53, 134, 173, 210, 225
SfaNI	GCATC	1 cut(s)	246
Sse9I	AATT	1 cut(s)	190
SsiI	CCGC	2 cut(s)	115, 180
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	158
TaaI	ACNGT	1 cut(s)	31
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	1 cut(s)	219
TasI	AATT	1 cut(s)	190
TatI	WGTACW	1 cut(s)	15
TauI	GCSGC	2 cut(s)	117, 182
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TseFI	GTSAC	1 cut(s)	25
Tsp45I	GTSAC	1 cut(s)	25
XagI	CCTNNNNNAGG	1 cut(s)	296
XmiI	GTMKAC	1 cut(s)	210
XspI	CTAG	1 cut(s)	228
ZraI	GACGTC	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.