Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001360

Physical Location & Seq

Genomic Coordinates Reverse (-)

24187806 .. 24188198

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44360

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAACGTCGACGACGACTTCCGCAACACGCGGTGGAGGACCGTGCTGTTCACGCACCCATCTACGCTGGAGACGATTTCCTTGGAAGCCGATCTCAAATCGAAGATTAAGTCTGATTTGGAGTCGTTTCTCAAAGCCAAGCAGTACTACAACCGACTCGGCCGTGTCTGGAAGCGAAGCTTCTTGCTTTACGGCCCCTCCGGCACTGGGAAATCCAACTTTATCGCCACTATGGCCAATTTCCTCGGCTACGACGTCTACGATCTCGACCTCTGTAGGGTTAAAGATGACTCGGAGTTGAAGATGCTTATTTTACAGACCATGAGCAAGTCGGTGATCCTCATCGAGGACCTGGATCGGTTCTTCTCCGAGAAATCGACGACGGTCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

130

Amino Acids

15.08

Weight (kDa)

7.79

Isoelectric Point (pI)

39.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	62 - 125	7.3e-08	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46620
fragaria_vesca	FvH4_7g17220 FvH4_7g32500
malus_domestica	MD01G1085900.v1.1 MD01G1225700.v1.1 MD02G1229200.v1.1 MD07G1155000.v1.1 MD07G1296200.v1.1
prunus_persica	Prupe.2G193700_v2.0.a1 Prupe.2G315800_v2.0.a1
pyrus_communis	pycom01g23420 pycom07g15210 pycom07g26900
rosa_chinensis	RchiOBHm_Chr1g0360611 RchiOBHm_Chr1g0382341 RchiOBHm_Chr2g0086831 RchiOBHm_Chr2g0139501 RchiOBHm_Chr3g0458211 RchiOBHm_Chr3g0478421 RchiOBHm_Chr4g0427361
rosa_laevigata	RLG00000002572 RLG00000009827 RLG00000026185 RLG00000027795 RLG00000030781
rosa_multiflora	Rmu_sc0000110.1_g000040 Rmu_sc0001436.1_g000033 Rmu_sc0002188.1_g000003 Rmu_sc0002535.1_g000007 Rmu_sc0003020.1_g000016 Rmu_sc0003481.1_g000013 Rmu_sc0004697.1_g000002 Rmu_sc0007558.1_g000001 Rmu_sc0010192.1_g000001 Rmu_sc0015587.1_g000001 Rmu_sc0042341.1_g000002
rosa_roxburghii	Rroxscaffold_2G00093530 Rroxscaffold_4G00278180
rosa_rugosa	Rorug01G0280000 Rorug01G0433500 Rorug02G0149500 Rorug05G0571400
rosa_samantha	Rh1AG292200 Rh1BG257100 Rh1BG414500 Rh1CG274900 Rh1DG287000 Rh1DG446600 Rh5BG487600 Rh5CG511800
rosa_wichuraiana	Rw1G025870 Rw1G041280 Rw5G043520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	258
AccI	GTMKAC	2 cut(s)	9, 258
AccII	CGCG	1 cut(s)	31
AciI	CCGC	2 cut(s)	22, 31
AclWI	GGATC	2 cut(s)	331, 363
AcoI	YGGCCR	2 cut(s)	160, 234
AcyI	GRCGYC	1 cut(s)	255
AdeI	CACNNNGTG	1 cut(s)	33
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	3 cut(s)	207, 277, 346
AgsI	TTSAA	1 cut(s)	301
AjnI	CCWGG	1 cut(s)	351
AluBI	AGCT	2 cut(s)	180, 390
AluI	AGCT	2 cut(s)	180, 390
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	2 cut(s)	331, 363
AoxI	GGCC	3 cut(s)	160, 193, 234
ArsI	GACNNNNNNTTYG	2 cut(s)	95, 127
AspS9I	GGNCC	3 cut(s)	39, 194, 349
AsuHPI	GGTGA	1 cut(s)	346
AvaII	GGWCC	2 cut(s)	39, 349
BalI	TGGCCA	1 cut(s)	236
BccI	CCATC	1 cut(s)	67
BceAI	ACGGC	2 cut(s)	147, 208
BciT130I	CCWGG	1 cut(s)	353
BcoDI	GTCTC	1 cut(s)	65
BfmI	CTRYAG	1 cut(s)	274
BglI	GCCNNNNNGGC	2 cut(s)	201, 233
BmcAI	AGTACT	1 cut(s)	146
Bme1390I	CCNGG	1 cut(s)	353
Bme18I	GGWCC	2 cut(s)	39, 349
BmgT120I	GGNCC	3 cut(s)	39, 194, 349
BmiI	GGNNCC	1 cut(s)	196
BmrFI	CCNGG	1 cut(s)	353
BmrI	ACTGGG	1 cut(s)	216
BmsI	GCATC	1 cut(s)	294
BmuI	ACTGGG	1 cut(s)	216
BoxI	GACNNNNGTC	1 cut(s)	383
BpmI	CTGGAG	1 cut(s)	89
BsaBI	GATNNNNATC	1 cut(s)	341
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	2 cut(s)	81, 244
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	3 cut(s)	207, 277, 346
Bse1I	ACTGG	1 cut(s)	211
Bse8I	GATNNNNATC	1 cut(s)	341
BseBI	CCWGG	1 cut(s)	353
BseDI	CCNNGG	2 cut(s)	81, 244
BseJI	GATNNNNATC	1 cut(s)	341
BseLI	CCNNNNNNNGG	3 cut(s)	207, 277, 346
BseNI	ACTGG	1 cut(s)	211
BseX3I	CGGCCG	1 cut(s)	160
Bsh1236I	CGCG	1 cut(s)	31
Bsh1285I	CGRYCG	1 cut(s)	163
BshFI	GGCC	3 cut(s)	162, 195, 236
BsiEI	CGRYCG	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	201
BslI	CCNNNNNNNGG	3 cut(s)	207, 277, 346
BsmAI	GTCTC	1 cut(s)	65
BsmBI	CGTCTC	1 cut(s)	65
BsnI	GGCC	3 cut(s)	162, 195, 236
Bsp143I	GATC	4 cut(s)	91, 262, 336, 355
BspACI	CCGC	2 cut(s)	22, 31
BspANI	GGCC	3 cut(s)	162, 195, 236
BspFNI	CGCG	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	196
BspPI	GGATC	2 cut(s)	331, 363
BsrI	ACTGG	1 cut(s)	211
BssECI	CCNNGG	2 cut(s)	81, 244
BssMI	GATC	4 cut(s)	91, 262, 336, 355
BssNI	GRCGYC	1 cut(s)	255
BssT1I	CCWWGG	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	353
Bst4CI	ACNGT	2 cut(s)	43, 385
BstACI	GRCGYC	1 cut(s)	255
BstENI	CCTNNNNNAGG	1 cut(s)	344
BstFNI	CGCG	1 cut(s)	31
BstKTI	GATC	4 cut(s)	94, 265, 339, 358
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	4 cut(s)	91, 262, 336, 355
BstMCI	CGRYCG	1 cut(s)	163
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 201, 233
BstNI	CCWGG	1 cut(s)	353
BstPAI	GACNNNNGTC	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	351
BstSFI	CTRYAG	1 cut(s)	274
BstUI	CGCG	1 cut(s)	31
BstZI	CGGCCG	1 cut(s)	160
BsuRI	GGCC	3 cut(s)	162, 195, 236
BtsIMutI	CAGTG	1 cut(s)	204
Cfr13I	GGNCC	3 cut(s)	39, 194, 349
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	1 cut(s)	322
CviJI	RGCY	8 cut(s)	89, 137, 162, 180, 195, 236, 249, 390
CviKI_1	RGCY	8 cut(s)	89, 137, 162, 180, 195, 236, 249, 390
CviQI	GTAC	1 cut(s)	145
DpnI	GATC	4 cut(s)	93, 264, 338, 357
DpnII	GATC	4 cut(s)	91, 262, 336, 355
DraIII	CACNNNGTG	1 cut(s)	33
EaeI	YGGCCR	2 cut(s)	160, 234
EagI	CGGCCG	1 cut(s)	160
EclXI	CGGCCG	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	81
Eco47I	GGWCC	2 cut(s)	39, 349
Eco52I	CGGCCG	1 cut(s)	160
EcoNI	CCTNNNNNAGG	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	349
EcoRII	CCWGG	1 cut(s)	351
EcoT14I	CCWWGG	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	81
Esp3I	CGTCTC	1 cut(s)	65
FaeI	CATG	1 cut(s)	325
FaiI	YATR	2 cut(s)	233, 323
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FatI	CATG	1 cut(s)	321
FblI	GTMKAC	2 cut(s)	9, 258
GsuI	CTGGAG	1 cut(s)	89
HaeIII	GGCC	3 cut(s)	162, 195, 236
HapII	CCGG	1 cut(s)	201
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	1 cut(s)	325
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HindIII	AAGCTT	1 cut(s)	178
HinfI	GANTC	3 cut(s)	122, 156, 290
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	3 cut(s)	10, 51, 259
Hpy188I	TCNGA	3 cut(s)	115, 295, 370
Hpy188III	TCNNGA	2 cut(s)	169, 266
Hpy8I	GTNNAC	3 cut(s)	10, 51, 259
Hpy99I	CGWCG	6 cut(s)	11, 14, 17, 257, 382, 385
HpyCH4III	ACNGT	2 cut(s)	43, 385
HpyCH4IV	ACGT	2 cut(s)	6, 255
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 201, 233
HpySE526I	ACGT	2 cut(s)	6, 255
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	1 cut(s)	325
Kzo9I	GATC	4 cut(s)	91, 262, 336, 355
LpnPI	CCDG	6 cut(s)	53, 154, 192, 214, 338, 365
LweI	GCATC	1 cut(s)	294
MaeII	ACGT	2 cut(s)	6, 255
MalI	GATC	4 cut(s)	93, 264, 338, 357
MboI	GATC	4 cut(s)	91, 262, 336, 355
MboII	GAAGA	3 cut(s)	115, 313, 355
MlsI	TGGCCA	1 cut(s)	236
MluCI	AATT	1 cut(s)	238
MluNI	TGGCCA	1 cut(s)	236
MlyI	GAGTC	3 cut(s)	131, 150, 284
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	6 cut(s)	30, 208, 254, 281, 340, 350
Mox20I	TGGCCA	1 cut(s)	236
MscI	TGGCCA	1 cut(s)	236
MseI	TTAA	2 cut(s)	108, 282
Msp20I	TGGCCA	1 cut(s)	236
MspA1I	CMGCKG	1 cut(s)	390
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	1 cut(s)	353
MvaI	CCWGG	1 cut(s)	353
MvnI	CGCG	1 cut(s)	31
MwoI	GCNNNNNNNGC	3 cut(s)	52, 201, 233
NdeII	GATC	4 cut(s)	91, 262, 336, 355
NlaIII	CATG	1 cut(s)	325
NlaIV	GGNNCC	1 cut(s)	196
NmeAIII	GCCGAG	2 cut(s)	138, 225
PcsI	WCGNNNNNNNCGW	4 cut(s)	12, 71, 252, 258
PleI	GAGTC	3 cut(s)	130, 150, 284
PpsI	GAGTC	3 cut(s)	130, 150, 284
PpuMI	RGGWCCY	1 cut(s)	349
PshAI	GACNNNNGTC	1 cut(s)	383
Psp5II	RGGWCCY	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	351
PspGI	CCWGG	1 cut(s)	351
PspN4I	GGNNCC	1 cut(s)	196
PspPI	GGNCC	3 cut(s)	39, 194, 349
PspPPI	RGGWCCY	1 cut(s)	349
PvuII	CAGCTG	1 cut(s)	390
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SalI	GTCGAC	1 cut(s)	8
SaqAI	TTAA	2 cut(s)	108, 282
Sau3AI	GATC	4 cut(s)	91, 262, 336, 355
Sau96I	GGNCC	3 cut(s)	39, 194, 349
ScaI	AGTACT	1 cut(s)	146
SchI	GAGTC	3 cut(s)	131, 150, 284
ScrFI	CCNGG	1 cut(s)	353
SetI	ASST	6 cut(s)	9, 182, 258, 273, 354, 392
SfaNI	GCATC	1 cut(s)	294
SfcI	CTRYAG	1 cut(s)	274
SgrDI	CGTCGACG	1 cut(s)	8
SinI	GGWCC	2 cut(s)	39, 349
Sse9I	AATT	1 cut(s)	238
SsiI	CCGC	2 cut(s)	22, 31
StyD4I	CCNGG	1 cut(s)	351
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	2 cut(s)	43, 385
TaiI	ACGT	2 cut(s)	9, 258
TaqI	TCGA	5 cut(s)	9, 101, 267, 345, 377
TasI	AATT	1 cut(s)	238
TatI	WGTACW	1 cut(s)	144
Tru1I	TTAA	2 cut(s)	108, 282
Tru9I	TTAA	2 cut(s)	108, 282
TscAI	CASTG	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	211
VpaK11BI	GGWCC	2 cut(s)	39, 349
XagI	CCTNNNNNAGG	1 cut(s)	344
XmiI	GTMKAC	2 cut(s)	9, 258
ZraI	GACGTC	1 cut(s)	256
ZrmI	AGTACT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.