Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001360

Physical Location & Seq

Genomic Coordinates Reverse (-)

27244101 .. 27244968

Gene Structure 868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1229200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAACGCTGAGCTGAAGAATAAAATTCGGTCCGATCTCGAAAATTTCCGCGTATGGAAGTGGAGTTTTTTGCTCTACGACCCCTCTGGCACCGGAAAAACCAGCTTCGTCGCCGCCATGGCGAGGTTCCTGAGCTACGACGGGTACGACGTCGACATGTCCAAAGTCGCCGACGACTCCGATCTGAAAATGCTTCTCCTCCAAACGACGCCGAAGTCGCTGATCGTGATGGAGGATCTGGACCGTTTCTGGACGGAGAAATTCATGGCTCGCAGTATGCTTCTTGAAATTGGAAAAAATGAGGAGAGAAACTCACCATCTGGAATTAAGTTTGCAACGCTACACGAGCGAGGATCTAAGTTGCATTTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

125

Amino Acids

14.33

Weight (kDa)

6.74

Isoelectric Point (pI)

37.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	24 - 87	8.1e-06	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46620
fragaria_vesca	FvH4_7g17220 FvH4_7g32500
malus_domestica	MD01G1085900.v1.1 MD01G1225700.v1.1 MD02G1229200.v1.1 MD07G1155000.v1.1 MD07G1296200.v1.1
prunus_persica	Prupe.2G193700_v2.0.a1 Prupe.2G315800_v2.0.a1
pyrus_communis	pycom01g23420 pycom07g15210 pycom07g26900
rosa_chinensis	RchiOBHm_Chr1g0360611 RchiOBHm_Chr1g0382341 RchiOBHm_Chr2g0086831 RchiOBHm_Chr2g0139501 RchiOBHm_Chr3g0458211 RchiOBHm_Chr3g0478421 RchiOBHm_Chr4g0427361
rosa_laevigata	RLG00000002572 RLG00000009827 RLG00000026185 RLG00000027795 RLG00000030781
rosa_multiflora	Rmu_sc0000110.1_g000040 Rmu_sc0001436.1_g000033 Rmu_sc0002188.1_g000003 Rmu_sc0002535.1_g000007 Rmu_sc0003020.1_g000016 Rmu_sc0003481.1_g000013 Rmu_sc0004697.1_g000002 Rmu_sc0007558.1_g000001 Rmu_sc0010192.1_g000001 Rmu_sc0015587.1_g000001 Rmu_sc0042341.1_g000002
rosa_roxburghii	Rroxscaffold_2G00093530 Rroxscaffold_4G00278180
rosa_rugosa	Rorug01G0280000 Rorug01G0433500 Rorug02G0149500 Rorug05G0571400
rosa_samantha	Rh1AG292200 Rh1BG257100 Rh1BG414500 Rh1CG274900 Rh1DG287000 Rh1DG446600 Rh5BG487600 Rh5CG511800
rosa_wichuraiana	Rw1G025870 Rw1G041280 Rw5G043520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	214
AatII	GACGTC	1 cut(s)	153
AccB1I	GGYRCC	1 cut(s)	89
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	1 cut(s)	51
AciI	CCGC	2 cut(s)	49, 114
AclWI	GGATC	2 cut(s)	243, 361
AcsI	RAATTY	3 cut(s)	24, 43, 260
AcuI	CTGAAG	1 cut(s)	35
AcyI	GRCGYC	2 cut(s)	150, 209
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	1 cut(s)	123
AflIII	ACRYGT	1 cut(s)	156
AgsI	TTSAA	1 cut(s)	287
AluBI	AGCT	3 cut(s)	13, 105, 135
AluI	AGCT	3 cut(s)	13, 105, 135
AlwI	GGATC	2 cut(s)	243, 361
ApoI	RAATTY	3 cut(s)	24, 43, 260
AspS9I	GGNCC	2 cut(s)	30, 241
AsuHPI	GGTGA	1 cut(s)	306
AvaII	GGWCC	2 cut(s)	30, 241
BanI	GGYRCC	1 cut(s)	89
BauI	CACGAG	1 cut(s)	344
BccI	CCATC	2 cut(s)	223, 325
BglI	GCCNNNNNGGC	1 cut(s)	119
BisI	GCNGC	1 cut(s)	114
BlpI	GCTNAGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	115
Bme18I	GGWCC	2 cut(s)	30, 241
BmgT120I	GGNCC	2 cut(s)	30, 241
BmiI	GGNNCC	2 cut(s)	91, 128
BplI	GAGNNNNNCTC	2 cut(s)	296, 328
Bpu10I	CCTNAGC	1 cut(s)	131
Bpu1102I	GCTNAGC	1 cut(s)	9
BsaHI	GRCGYC	2 cut(s)	150, 209
BsaJI	CCNNGG	1 cut(s)	117
BsaWI	WCCGGW	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	122
BseRI	GAGGAG	2 cut(s)	188, 317
Bsh1236I	CGCG	1 cut(s)	51
BshNI	GGYRCC	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	93
BslI	CCNNNNNNNGG	1 cut(s)	123
Bsp143I	GATC	5 cut(s)	34, 181, 222, 235, 353
Bsp1720I	GCTNAGC	1 cut(s)	9
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	2 cut(s)	49, 114
BspCNI	CTCAG	1 cut(s)	123
BspFNI	CGCG	1 cut(s)	51
BspLI	GGNNCC	2 cut(s)	91, 128
BspPI	GGATC	2 cut(s)	243, 361
BspT107I	GGYRCC	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	5 cut(s)	34, 181, 222, 235, 353
BssNI	GRCGYC	2 cut(s)	150, 209
BssSI	CACGAG	1 cut(s)	344
BssT1I	CCWWGG	1 cut(s)	117
Bst2BI	CACGAG	1 cut(s)	344
Bst4CI	ACNGT	1 cut(s)	245
BstACI	GRCGYC	2 cut(s)	150, 209
BstC8I	GCNNGC	1 cut(s)	271
BstDEI	CTNAG	3 cut(s)	9, 131, 357
BstDSI	CCRYGG	1 cut(s)	117
BstFNI	CGCG	1 cut(s)	51
BstKTI	GATC	5 cut(s)	37, 184, 225, 238, 356
BstMBI	GATC	5 cut(s)	34, 181, 222, 235, 353
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 217, 346
BstNSI	RCATGY	1 cut(s)	160
BstUI	CGCG	1 cut(s)	51
BstX2I	RGATCY	2 cut(s)	235, 353
BstYI	RGATCY	2 cut(s)	235, 353
BtgI	CCRYGG	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	271
Cfr13I	GGNCC	2 cut(s)	30, 241
CpoI	CGGWCCG	1 cut(s)	30
CseI	GACGC	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	145
CspI	CGGWCCG	1 cut(s)	30
CviAII	CATG	3 cut(s)	118, 157, 265
CviJI	RGCY	4 cut(s)	13, 105, 135, 269
CviKI_1	RGCY	4 cut(s)	13, 105, 135, 269
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	3 cut(s)	9, 131, 357
DpnI	GATC	5 cut(s)	36, 183, 224, 237, 355
DpnII	GATC	5 cut(s)	34, 181, 222, 235, 353
DrdI	GACNNNNNNGTC	1 cut(s)	214
DseDI	GACNNNNNNGTC	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	117
Eco47I	GGWCC	2 cut(s)	30, 241
Eco57I	CTGAAG	1 cut(s)	35
EcoT14I	CCWWGG	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	3 cut(s)	121, 160, 268
FaiI	YATR	5 cut(s)	55, 119, 158, 266, 278
FatI	CATG	3 cut(s)	117, 156, 264
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	114
GluI	GCNGC	1 cut(s)	114
HapII	CCGG	1 cut(s)	93
HgaI	GACGC	1 cut(s)	217
Hin1I	GRCGYC	2 cut(s)	150, 209
Hin1II	CATG	3 cut(s)	121, 160, 268
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	1 cut(s)	176
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	1 cut(s)	306
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	3 cut(s)	34, 181, 186
Hpy188III	TCNNGA	7 cut(s)	38, 130, 226, 239, 250, 284, 321
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	6 cut(s)	113, 143, 152, 155, 176, 211
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	2 cut(s)	335, 364
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 217, 346
HpyF3I	CTNAG	3 cut(s)	9, 131, 357
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	2 cut(s)	150, 209
Hsp92II	CATG	3 cut(s)	121, 160, 268
Kzo9I	GATC	5 cut(s)	34, 181, 222, 235, 353
LpnPI	CCDG	7 cut(s)	72, 106, 115, 143, 224, 235, 306
MaeII	ACGT	1 cut(s)	150
MalI	GATC	5 cut(s)	36, 183, 224, 237, 355
MboI	GATC	5 cut(s)	34, 181, 222, 235, 353
MboII	GAAGA	1 cut(s)	28
MflI	RGATCY	2 cut(s)	235, 353
MluCI	AATT	5 cut(s)	24, 43, 260, 288, 324
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	6 cut(s)	94, 117, 209, 226, 295, 344
MseI	TTAA	1 cut(s)	327
MspI	CCGG	1 cut(s)	93
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	3 cut(s)	119, 217, 346
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	5 cut(s)	34, 181, 222, 235, 353
NlaIII	CATG	3 cut(s)	121, 160, 268
NlaIV	GGNNCC	2 cut(s)	91, 128
NspI	RCATGY	1 cut(s)	160
PciI	ACATGT	1 cut(s)	156
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 147
PkrI	GCNGC	1 cut(s)	115
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
PscI	ACATGT	1 cut(s)	156
PspN4I	GGNNCC	2 cut(s)	91, 128
PspPI	GGNCC	2 cut(s)	30, 241
PsuI	RGATCY	2 cut(s)	235, 353
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
Rsr2I	CGGWCCG	1 cut(s)	30
RsrII	CGGWCCG	1 cut(s)	30
SalI	GTCGAC	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	1 cut(s)	114
Sau3AI	GATC	5 cut(s)	34, 181, 222, 235, 353
Sau96I	GGNCC	2 cut(s)	30, 241
SchI	GAGTC	1 cut(s)	170
SetI	ASST	5 cut(s)	15, 107, 128, 137, 153
SinI	GGWCC	2 cut(s)	30, 241
Sse9I	AATT	5 cut(s)	24, 43, 260, 288, 324
SsiI	CCGC	2 cut(s)	49, 114
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	245
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	2 cut(s)	39, 153
TaqII	GACCGA	1 cut(s)	18
TasI	AATT	5 cut(s)	24, 43, 260, 288, 324
TauI	GCSGC	1 cut(s)	116
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TspDTI	ATGAA	2 cut(s)	17, 253
TspGWI	ACGGA	1 cut(s)	269
VpaK11BI	GGWCC	2 cut(s)	30, 241
XapI	RAATTY	3 cut(s)	24, 43, 260
XceI	RCATGY	1 cut(s)	160
XmiI	GTMKAC	1 cut(s)	153
ZraI	GACGTC	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.