Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010192.1

Orthogroup ID

OG0001360

Physical Location & Seq

Genomic Coordinates Reverse (-)

1492 .. 2028

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010192.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atgataagccttcatctcatggagaatcagctgtactgcaaggtcaccgtatatctcaactcattgacctccattgaggactctgatttggagtcgtttctcaaagccaagcagtattacaaccgactcagccgcgtccggaagagaagcttcttgctttacggcccctccggcaccaggaaatccagcttcgtagccaccatggccaatttcctcgactacgacgtctacgatctcgacctctctagggttaaagatgactcggagttgaagatgcttcttttacagactacgagcaagtcggtgatcctcattgaggacctggatcggttcttcgccaagaaaacgacggcggtcagcttctccggcacatcgaatttcatggacggcttgctcaaatcgtgctgcgtcgaagagagagttgatgagatttggagcctctgcactttcgttgtgctgggtataagattttggaaggaaaaaaaattctgggtatatatttgtttagtgatgggggctgaatgggaaaatgagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

178

Amino Acids

20.75

Weight (kDa)

5.95

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46620
fragaria_vesca	FvH4_7g17220 FvH4_7g32500
malus_domestica	MD01G1085900.v1.1 MD01G1225700.v1.1 MD02G1229200.v1.1 MD07G1155000.v1.1 MD07G1296200.v1.1
prunus_persica	Prupe.2G193700_v2.0.a1 Prupe.2G315800_v2.0.a1
pyrus_communis	pycom01g23420 pycom07g15210 pycom07g26900
rosa_chinensis	RchiOBHm_Chr1g0360611 RchiOBHm_Chr1g0382341 RchiOBHm_Chr2g0086831 RchiOBHm_Chr2g0139501 RchiOBHm_Chr3g0458211 RchiOBHm_Chr3g0478421 RchiOBHm_Chr4g0427361
rosa_laevigata	RLG00000002572 RLG00000009827 RLG00000026185 RLG00000027795 RLG00000030781
rosa_multiflora	Rmu_sc0000110.1_g000040 Rmu_sc0001436.1_g000033 Rmu_sc0002188.1_g000003 Rmu_sc0002535.1_g000007 Rmu_sc0003020.1_g000016 Rmu_sc0003481.1_g000013 Rmu_sc0004697.1_g000002 Rmu_sc0007558.1_g000001 Rmu_sc0010192.1_g000001 Rmu_sc0015587.1_g000001 Rmu_sc0042341.1_g000002
rosa_roxburghii	Rroxscaffold_2G00093530 Rroxscaffold_4G00278180
rosa_rugosa	Rorug01G0280000 Rorug01G0433500 Rorug02G0149500 Rorug05G0571400
rosa_samantha	Rh1AG292200 Rh1BG257100 Rh1BG414500 Rh1CG274900 Rh1DG287000 Rh1DG446600 Rh5BG487600 Rh5CG511800
rosa_wichuraiana	Rw1G025870 Rw1G041280 Rw5G043520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	224
AatII	GACGTC	1 cut(s)	228
AccB1I	GGYRCC	1 cut(s)	173
AccI	GTMKAC	1 cut(s)	228
AccII	CGCG	1 cut(s)	135
AccIII	TCCGGA	1 cut(s)	138
AciI	CCGC	2 cut(s)	133, 353
AclWI	GGATC	2 cut(s)	301, 333
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	2 cut(s)	376, 485
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	3 cut(s)	177, 247, 316
AgsI	TTSAA	1 cut(s)	271
AjnI	CCWGG	2 cut(s)	176, 321
AluBI	AGCT	4 cut(s)	31, 150, 189, 360
AluI	AGCT	4 cut(s)	31, 150, 189, 360
AlwI	GGATC	2 cut(s)	301, 333
Aor13HI	TCCGGA	1 cut(s)	138
AoxI	GGCC	2 cut(s)	163, 204
ApeKI	GCWGC	1 cut(s)	405
ApoI	RAATTY	2 cut(s)	376, 485
AspS9I	GGNCC	2 cut(s)	164, 319
AsuHPI	GGTGA	2 cut(s)	37, 316
AvaII	GGWCC	1 cut(s)	319
BalI	TGGCCA	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	173
BbvI	GCAGC	1 cut(s)	392
BccI	CCATC	1 cut(s)	505
BceAI	ACGGC	3 cut(s)	178, 366, 403
BciT130I	CCWGG	2 cut(s)	178, 323
BfaI	CTAG	1 cut(s)	246
BglI	GCCNNNNNGGC	2 cut(s)	171, 203
BisI	GCNGC	2 cut(s)	133, 406
BlsI	GCNGC	2 cut(s)	134, 407
Bme1390I	CCNGG	2 cut(s)	178, 323
Bme18I	GGWCC	1 cut(s)	319
BmgT120I	GGNCC	2 cut(s)	164, 319
BmiI	GGNNCC	3 cut(s)	166, 175, 437
BmrFI	CCNGG	2 cut(s)	178, 323
BmsI	GCATC	1 cut(s)	264
BoxI	GACNNNNGTC	1 cut(s)	353
BsaHI	GRCGYC	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	201
BsaWI	WCCGGW	1 cut(s)	138
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	3 cut(s)	177, 247, 316
BseAI	TCCGGA	1 cut(s)	138
BseBI	CCWGG	2 cut(s)	178, 323
BseDI	CCNNGG	1 cut(s)	201
BseLI	CCNNNNNNNGG	3 cut(s)	177, 247, 316
BseMII	CTCAG	1 cut(s)	142
BseXI	GCAGC	1 cut(s)	392
BseYI	CCCAGC	1 cut(s)	457
BsgI	GTGCAG	1 cut(s)	427
Bsh1236I	CGCG	1 cut(s)	135
BshFI	GGCC	2 cut(s)	165, 206
BshNI	GGYRCC	1 cut(s)	173
BsiSI	CCGG	3 cut(s)	139, 171, 366
BslI	CCNNNNNNNGG	3 cut(s)	177, 247, 316
BsnI	GGCC	2 cut(s)	165, 206
Bsp13I	TCCGGA	1 cut(s)	138
Bsp143I	GATC	3 cut(s)	232, 306, 325
Bsp19I	CCATGG	1 cut(s)	201
BspACI	CCGC	2 cut(s)	133, 353
BspANI	GGCC	2 cut(s)	165, 206
BspCNI	CTCAG	1 cut(s)	141
BspEI	TCCGGA	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	3 cut(s)	166, 175, 437
BspPI	GGATC	2 cut(s)	301, 333
BspT107I	GGYRCC	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	3 cut(s)	232, 306, 325
BssNI	GRCGYC	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	2 cut(s)	178, 323
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	2 cut(s)	137, 408
BstACI	GRCGYC	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	392
BstDEI	CTNAG	1 cut(s)	128
BstDSI	CCRYGG	1 cut(s)	201
BstEII	GGTNACC	1 cut(s)	43
BstENI	CCTNNNNNAGG	1 cut(s)	314
BstFNI	CGCG	1 cut(s)	135
BstKTI	GATC	3 cut(s)	235, 309, 328
BstMBI	GATC	3 cut(s)	232, 306, 325
BstMWI	GCNNNNNNNGC	3 cut(s)	171, 203, 366
BstNI	CCWGG	2 cut(s)	178, 323
BstPAI	GACNNNNGTC	1 cut(s)	353
BstPI	GGTNACC	1 cut(s)	43
BstSCI	CCNGG	2 cut(s)	176, 321
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	392
BsuRI	GGCC	2 cut(s)	165, 206
BtgI	CCRYGG	1 cut(s)	201
Cac8I	GCNNGC	1 cut(s)	392
Cfr13I	GGNCC	2 cut(s)	164, 319
CseI	GACGC	2 cut(s)	124, 397
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	3 cut(s)	19, 202, 382
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	3 cut(s)	234, 308, 327
DpnII	GATC	3 cut(s)	232, 306, 325
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	2 cut(s)	137, 408
EarI	CTCTTC	2 cut(s)	137, 408
Eco130I	CCWWGG	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	319
Eco91I	GGTNACC	1 cut(s)	43
EcoNI	CCTNNNNNAGG	1 cut(s)	314
EcoO109I	RGGNCCY	1 cut(s)	319
EcoO65I	GGTNACC	1 cut(s)	43
EcoRII	CCWGG	2 cut(s)	176, 321
EcoT14I	CCWWGG	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	3 cut(s)	22, 205, 385
FaiI	YATR	7 cut(s)	20, 52, 203, 383, 464, 496, 498
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FatI	CATG	3 cut(s)	18, 201, 381
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	2 cut(s)	133, 406
Fsp4HI	GCNGC	2 cut(s)	133, 406
FspBI	CTAG	1 cut(s)	246
GluI	GCNGC	2 cut(s)	133, 406
GsaI	CCCAGC	1 cut(s)	461
HaeIII	GGCC	2 cut(s)	165, 206
HapII	CCGG	3 cut(s)	139, 171, 366
HgaI	GACGC	2 cut(s)	124, 397
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	3 cut(s)	22, 205, 385
HindIII	AAGCTT	1 cut(s)	148
HinfI	GANTC	5 cut(s)	25, 80, 92, 126, 260
HpaII	CCGG	3 cut(s)	139, 171, 366
HphI	GGTGA	2 cut(s)	37, 316
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	2 cut(s)	85, 265
Hpy188III	TCNNGA	2 cut(s)	139, 236
Hpy8I	GTNNAC	1 cut(s)	229
Hpy99I	CGWCG	3 cut(s)	227, 352, 413
HpyAV	CCTTC	2 cut(s)	20, 469
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	2 cut(s)	39, 444
HpyF10VI	GCNNNNNNNGC	3 cut(s)	171, 203, 366
HpyF3I	CTNAG	1 cut(s)	128
HpySE526I	ACGT	1 cut(s)	225
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	3 cut(s)	22, 205, 385
Kpn2I	TCCGGA	1 cut(s)	138
Kzo9I	GATC	3 cut(s)	232, 306, 325
LmnI	GCTCC	1 cut(s)	435
Lsp1109I	GCAGC	1 cut(s)	392
LweI	GCATC	1 cut(s)	264
MaeI	CTAG	1 cut(s)	246
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	3 cut(s)	234, 308, 327
MboI	GATC	3 cut(s)	232, 306, 325
MboII	GAAGA	4 cut(s)	154, 283, 325, 425
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	3 cut(s)	208, 376, 485
MluNI	TGGCCA	1 cut(s)	206
MlyI	GAGTC	4 cut(s)	74, 101, 120, 254
MnlI	CCTC	8 cut(s)	70, 79, 178, 224, 251, 310, 320, 449
Mox20I	TGGCCA	1 cut(s)	206
MroI	TCCGGA	1 cut(s)	138
MscI	TGGCCA	1 cut(s)	206
MseI	TTAA	1 cut(s)	252
Msp20I	TGGCCA	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	31
MspI	CCGG	3 cut(s)	139, 171, 366
MspR9I	CCNGG	2 cut(s)	178, 323
MvaI	CCWGG	2 cut(s)	178, 323
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	3 cut(s)	171, 203, 366
NcoI	CCATGG	1 cut(s)	201
NdeII	GATC	3 cut(s)	232, 306, 325
NlaIII	CATG	3 cut(s)	22, 205, 385
NlaIV	GGNNCC	3 cut(s)	166, 175, 437
NmuCI	GTSAC	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	2 cut(s)	222, 228
PfeI	GAWTC	1 cut(s)	25
PkrI	GCNGC	2 cut(s)	134, 407
PleI	GAGTC	4 cut(s)	74, 100, 120, 254
PpsI	GAGTC	4 cut(s)	74, 100, 120, 254
PpuMI	RGGWCCY	1 cut(s)	319
PshAI	GACNNNNGTC	1 cut(s)	353
Psp5II	RGGWCCY	1 cut(s)	319
Psp6I	CCWGG	2 cut(s)	176, 321
PspEI	GGTNACC	1 cut(s)	43
PspFI	CCCAGC	1 cut(s)	457
PspGI	CCWGG	2 cut(s)	176, 321
PspN4I	GGNNCC	3 cut(s)	166, 175, 437
PspPI	GGNCC	2 cut(s)	164, 319
PspPPI	RGGWCCY	1 cut(s)	319
PvuII	CAGCTG	1 cut(s)	31
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	2 cut(s)	133, 406
Sau3AI	GATC	3 cut(s)	232, 306, 325
Sau96I	GGNCC	2 cut(s)	164, 319
SchI	GAGTC	4 cut(s)	74, 101, 120, 254
ScrFI	CCNGG	2 cut(s)	178, 323
SetI	ASST	9 cut(s)	33, 45, 71, 152, 191, 228, 243, 324, 362
SfaNI	GCATC	1 cut(s)	264
SinI	GGWCC	1 cut(s)	319
Sse9I	AATT	3 cut(s)	208, 376, 485
SsiI	CCGC	2 cut(s)	133, 353
SspMI	CTAG	1 cut(s)	246
StyD4I	CCNGG	2 cut(s)	176, 321
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	4 cut(s)	216, 237, 374, 411
TasI	AATT	3 cut(s)	208, 376, 485
TatI	WGTACW	1 cut(s)	33
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	1 cut(s)	405
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	1 cut(s)	370
VpaK11BI	GGWCC	1 cut(s)	319
XagI	CCTNNNNNAGG	1 cut(s)	314
XapI	RAATTY	2 cut(s)	376, 485
XmiI	GTMKAC	1 cut(s)	228
XspI	CTAG	1 cut(s)	246
ZraI	GACGTC	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.