Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001360

Physical Location & Seq

Genomic Coordinates Forward (+)

14897085 .. 14897393

Gene Structure 309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00093530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGAACGTCGACGACTCCGCCACGGCCAGCGACGACTTCCGCAACGCGCGGTGGAGGACCGTGCCGTTCACGCACCCATCTACGCTGGAGACGATTGCCATGGAAACCGATCTCAAATCGAAGATCAAGTCCGATTTGGAGTCGTTTCTCAAAGCCAAGCAGTACTACAACCGACTCGGCCTCGTCTGGAAGCGCGAAGCTTCTTGCTTTACGGCCCCTCCGGCACCGGGAAATCCAGCTTTATCGCCGCCATGGCCAATTTCCTCTGCTACGACGTCTACGATCTCGGAGTTGAAGATCAAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

102

Amino Acids

11.36

Weight (kDa)

8.82

Isoelectric Point (pI)

44.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46620
fragaria_vesca	FvH4_7g17220 FvH4_7g32500
malus_domestica	MD01G1085900.v1.1 MD01G1225700.v1.1 MD02G1229200.v1.1 MD07G1155000.v1.1 MD07G1296200.v1.1
prunus_persica	Prupe.2G193700_v2.0.a1 Prupe.2G315800_v2.0.a1
pyrus_communis	pycom01g23420 pycom07g15210 pycom07g26900
rosa_chinensis	RchiOBHm_Chr1g0360611 RchiOBHm_Chr1g0382341 RchiOBHm_Chr2g0086831 RchiOBHm_Chr2g0139501 RchiOBHm_Chr3g0458211 RchiOBHm_Chr3g0478421 RchiOBHm_Chr4g0427361
rosa_laevigata	RLG00000002572 RLG00000009827 RLG00000026185 RLG00000027795 RLG00000030781
rosa_multiflora	Rmu_sc0000110.1_g000040 Rmu_sc0001436.1_g000033 Rmu_sc0002188.1_g000003 Rmu_sc0002535.1_g000007 Rmu_sc0003020.1_g000016 Rmu_sc0003481.1_g000013 Rmu_sc0004697.1_g000002 Rmu_sc0007558.1_g000001 Rmu_sc0010192.1_g000001 Rmu_sc0015587.1_g000001 Rmu_sc0042341.1_g000002
rosa_roxburghii	Rroxscaffold_2G00093530 Rroxscaffold_4G00278180
rosa_rugosa	Rorug01G0280000 Rorug01G0433500 Rorug02G0149500 Rorug05G0571400
rosa_samantha	Rh1AG292200 Rh1BG257100 Rh1BG414500 Rh1CG274900 Rh1DG287000 Rh1DG446600 Rh5BG487600 Rh5CG511800
rosa_wichuraiana	Rw1G025870 Rw1G041280 Rw5G043520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	278
AccB1I	GGYRCC	1 cut(s)	223
AccI	GTMKAC	2 cut(s)	9, 278
AccII	CGCG	3 cut(s)	47, 49, 195
AciI	CCGC	4 cut(s)	18, 40, 49, 248
AcoI	YGGCCR	2 cut(s)	24, 254
AcyI	GRCGYC	1 cut(s)	275
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	227
AgsI	TTSAA	1 cut(s)	295
AluBI	AGCT	3 cut(s)	200, 239, 304
AluI	AGCT	3 cut(s)	200, 239, 304
Alw26I	GTCTC	1 cut(s)	83
AoxI	GGCC	4 cut(s)	24, 178, 213, 254
ArsI	GACNNNNNNTTYG	2 cut(s)	113, 145
AspLEI	GCGC	2 cut(s)	49, 195
AspS9I	GGNCC	2 cut(s)	57, 214
AsuC2I	CCSGG	1 cut(s)	228
AvaII	GGWCC	1 cut(s)	57
BalI	TGGCCA	1 cut(s)	256
BanI	GGYRCC	1 cut(s)	223
BccI	CCATC	1 cut(s)	85
BceAI	ACGGC	3 cut(s)	39, 49, 228
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	83
BfmI	CTRYAG	1 cut(s)	305
BglI	GCCNNNNNGGC	2 cut(s)	221, 253
BisI	GCNGC	1 cut(s)	248
BlsI	GCNGC	1 cut(s)	249
BmcAI	AGTACT	1 cut(s)	164
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	2 cut(s)	57, 214
BmiI	GGNNCC	2 cut(s)	216, 225
BmrFI	CCNGG	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	107
BpuMI	CCSGG	1 cut(s)	228
BsaHI	GRCGYC	1 cut(s)	275
BsaJI	CCNNGG	3 cut(s)	21, 99, 251
BsaXI	ACNNNNNCTCC	2 cut(s)	202, 232
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
BseDI	CCNNGG	3 cut(s)	21, 99, 251
BseLI	CCNNNNNNNGG	1 cut(s)	227
Bsh1236I	CGCG	3 cut(s)	47, 49, 195
BshFI	GGCC	4 cut(s)	26, 180, 215, 256
BshNI	GGYRCC	1 cut(s)	223
BsiSI	CCGG	2 cut(s)	221, 227
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmAI	GTCTC	1 cut(s)	83
BsmBI	CGTCTC	1 cut(s)	83
BsnI	GGCC	4 cut(s)	26, 180, 215, 256
Bsp143I	GATC	4 cut(s)	109, 123, 282, 297
Bsp19I	CCATGG	2 cut(s)	99, 251
BspACI	CCGC	4 cut(s)	18, 40, 49, 248
BspANI	GGCC	4 cut(s)	26, 180, 215, 256
BspFNI	CGCG	3 cut(s)	47, 49, 195
BspLI	GGNNCC	2 cut(s)	216, 225
BspT107I	GGYRCC	1 cut(s)	223
BssECI	CCNNGG	3 cut(s)	21, 99, 251
BssMI	GATC	4 cut(s)	109, 123, 282, 297
BssNI	GRCGYC	1 cut(s)	275
BssT1I	CCWWGG	2 cut(s)	99, 251
Bst4CI	ACNGT	1 cut(s)	61
BstACI	GRCGYC	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	28
BstDSI	CCRYGG	3 cut(s)	21, 99, 251
BstFNI	CGCG	3 cut(s)	47, 49, 195
BstHHI	GCGC	2 cut(s)	49, 195
BstKTI	GATC	4 cut(s)	112, 126, 285, 300
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	4 cut(s)	109, 123, 282, 297
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 221, 253
BstSCI	CCNGG	1 cut(s)	226
BstSFI	CTRYAG	1 cut(s)	305
BstUI	CGCG	3 cut(s)	47, 49, 195
BsuRI	GGCC	4 cut(s)	26, 180, 215, 256
BtgI	CCRYGG	3 cut(s)	21, 99, 251
Cac8I	GCNNGC	1 cut(s)	28
CfoI	GCGC	2 cut(s)	49, 195
Cfr13I	GGNCC	2 cut(s)	57, 214
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	2 cut(s)	100, 252
CviJI	RGCY	8 cut(s)	26, 155, 180, 200, 215, 239, 256, 304
CviKI_1	RGCY	8 cut(s)	26, 155, 180, 200, 215, 239, 256, 304
CviQI	GTAC	1 cut(s)	163
DpnI	GATC	4 cut(s)	111, 125, 284, 299
DpnII	GATC	4 cut(s)	109, 123, 282, 297
EaeI	YGGCCR	2 cut(s)	24, 254
EciI	GGCGGA	1 cut(s)	7
Eco130I	CCWWGG	2 cut(s)	99, 251
Eco47I	GGWCC	1 cut(s)	57
EcoT14I	CCWWGG	2 cut(s)	99, 251
ErhI	CCWWGG	2 cut(s)	99, 251
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	2 cut(s)	103, 255
FaiI	YATR	2 cut(s)	101, 253
FatI	CATG	2 cut(s)	99, 251
FblI	GTMKAC	2 cut(s)	9, 278
Fnu4HI	GCNGC	1 cut(s)	248
Fsp4HI	GCNGC	1 cut(s)	248
GlaI	GCGC	2 cut(s)	48, 194
GluI	GCNGC	1 cut(s)	248
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	4 cut(s)	26, 180, 215, 256
HapII	CCGG	2 cut(s)	221, 227
HhaI	GCGC	2 cut(s)	49, 195
Hin1I	GRCGYC	1 cut(s)	275
Hin1II	CATG	2 cut(s)	103, 255
Hin6I	GCGC	2 cut(s)	47, 193
HinP1I	GCGC	2 cut(s)	47, 193
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HindIII	AAGCTT	1 cut(s)	198
HinfI	GANTC	3 cut(s)	14, 140, 174
HpaII	CCGG	2 cut(s)	221, 227
Hpy166II	GTNNAC	3 cut(s)	10, 69, 279
Hpy188I	TCNGA	2 cut(s)	133, 289
Hpy188III	TCNNGA	1 cut(s)	187
Hpy8I	GTNNAC	3 cut(s)	10, 69, 279
Hpy99I	CGWCG	4 cut(s)	11, 14, 35, 277
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4IV	ACGT	2 cut(s)	6, 275
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 221, 253
HpySE526I	ACGT	2 cut(s)	6, 275
Hsp92I	GRCGYC	1 cut(s)	275
Hsp92II	CATG	2 cut(s)	103, 255
HspAI	GCGC	2 cut(s)	47, 193
Kzo9I	GATC	4 cut(s)	109, 123, 282, 297
LpnPI	CCDG	6 cut(s)	40, 71, 172, 234, 240, 249
MaeII	ACGT	2 cut(s)	6, 275
MalI	GATC	4 cut(s)	111, 125, 284, 299
MboI	GATC	4 cut(s)	109, 123, 282, 297
MboII	GAAGA	2 cut(s)	133, 307
MlsI	TGGCCA	1 cut(s)	256
MluCI	AATT	1 cut(s)	258
MluNI	TGGCCA	1 cut(s)	256
MlyI	GAGTC	3 cut(s)	8, 149, 168
MnlI	CCTC	4 cut(s)	48, 191, 228, 274
Mox20I	TGGCCA	1 cut(s)	256
MscI	TGGCCA	1 cut(s)	256
Msp20I	TGGCCA	1 cut(s)	256
MspI	CCGG	2 cut(s)	221, 227
MspR9I	CCNGG	1 cut(s)	228
MvnI	CGCG	3 cut(s)	47, 49, 195
MwoI	GCNNNNNNNGC	3 cut(s)	70, 221, 253
NciI	CCSGG	1 cut(s)	228
NcoI	CCATGG	2 cut(s)	99, 251
NdeII	GATC	4 cut(s)	109, 123, 282, 297
NlaIII	CATG	2 cut(s)	103, 255
NlaIV	GGNNCC	2 cut(s)	216, 225
NmeAIII	GCCGAG	1 cut(s)	156
PcsI	WCGNNNNNNNCGW	2 cut(s)	89, 278
PkrI	GCNGC	1 cut(s)	249
PleI	GAGTC	3 cut(s)	8, 148, 168
PpsI	GAGTC	3 cut(s)	8, 148, 168
PspN4I	GGNNCC	2 cut(s)	216, 225
PspPI	GGNCC	2 cut(s)	57, 214
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SalI	GTCGAC	1 cut(s)	8
SatI	GCNGC	1 cut(s)	248
Sau3AI	GATC	4 cut(s)	109, 123, 282, 297
Sau96I	GGNCC	2 cut(s)	57, 214
ScaI	AGTACT	1 cut(s)	164
SchI	GAGTC	3 cut(s)	8, 149, 168
ScrFI	CCNGG	1 cut(s)	228
SetI	ASST	5 cut(s)	9, 202, 241, 278, 306
SfcI	CTRYAG	1 cut(s)	305
SgrDI	CGTCGACG	1 cut(s)	8
SinI	GGWCC	1 cut(s)	57
Sse9I	AATT	1 cut(s)	258
SsiI	CCGC	4 cut(s)	18, 40, 49, 248
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	2 cut(s)	99, 251
TaaI	ACNGT	1 cut(s)	61
TaiI	ACGT	2 cut(s)	9, 278
TaqI	TCGA	2 cut(s)	9, 119
TasI	AATT	1 cut(s)	258
TatI	WGTACW	1 cut(s)	162
TauI	GCSGC	1 cut(s)	250
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	57
XmiI	GTMKAC	2 cut(s)	9, 278
ZraI	GACGTC	1 cut(s)	276
ZrmI	AGTACT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.