Rmu_sc0001436.1_g000033

Domain associated at C-terminal with AAA

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001436.1
Physical Location & Seq
Forward (+)
146919 .. 149891
2973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001436.1_g000033.1.cds

Sequence Viewer

Length: 1170 bp
atggttggacacgtgcaagttctcggatcctggtcaaatgattgttccgatttcagtacaaaaaaagcccaacgaaatcgtcctctagctcgaccccaaccagaccatcgaagacgactttctcgaggccaaggtcaggtggcaaagcgaagtaagggttccaataactattggaatttggtgttgaaggttcggaaagccgataagcggcggattctgcggccgtatttgcagcacattcacgtcgtcgccgacgagctggaccagcggaagcaagatttgctgctgtacatgaacgtcgacgactccgccacggccgacgacgacttctgcaacgctcggtggaggactgtgccgttcacgcacccatctacgctggagacgattgccatggaagctgatctcaaatcgaagatcaagtccgatttggagtcgtttctcaaagccaagcagtactacaacggactcggccacgtctggaagcgaagcttcttgctttacggcccctccggcactgggaaatccagctttatcgccaccatggccaatttcctcggctacgacgtctacgatctcgacctctctagggttaaagacgactcggagttgaagatgcttcttttacagaccacgagcaagtcggtgatcctcgtcgaggacgtggatcggttcttctccgagaaatcgtcggcgatcagcttctccggcatatcgaacttcatggacggcttgctcaactcgtgctacgccgaagagagagtcatggtgttcatgatgaactcgaaggaccaggtcgacccgaatttcctcagaccgggtcaaatcgacgtccacatccattttccattgtgtgatttcacggcgtttcggaacctagggatgagctatttggggcctacctctctcttccagactccgttgtcgaggaccaacccgccggtgctgcgcatctccggcgtcgatccactccccgatcttcaccttggcgcgacgttgagttctttcccagattcctgcgttcgatccactccgccgtctccttgccctcaacgagcgttcgatccactccgctgcgcgtcaccgacgttcgatccactctgccgttgctccgatatcgtatcctccaatgctaaatgcaggccggtggtagaggagaaaggagaaagatga

Protein Analysis

389

Amino Acids

43.91

Weight (kDa)

8.82

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 919
AatII GACGTC 2 cut(s) 567, 831
Acc16I TGCGCA 1 cut(s) 947
AccI GTMKAC 3 cut(s) 300, 567, 795
AccII CGCG 2 cut(s) 989, 1076
AciI CCGC 8 cut(s) 208, 211, 220, 268, 309, 935, 1031, 1069
AclWI GGATC 8 cut(s) 21, 34, 640, 672, 956, 1017, 1055, 1085
AcoI YGGCCR 4 cut(s) 221, 315, 469, 543
AcsI RAATTY 2 cut(s) 175, 802
AcvI CACGTG 1 cut(s) 13
AcyI GRCGYC 3 cut(s) 564, 828, 957
AfaI GTAC 3 cut(s) 58, 290, 455
AfiI CCNNNNNNNGG 6 cut(s) 136, 207, 516, 586, 655, 814
AflIII ACRYGT 1 cut(s) 10
AgsI TTSAA 2 cut(s) 187, 610
AjiI CACGTC 3 cut(s) 244, 475, 661
AjnI CCWGG 2 cut(s) 29, 789
AluBI AGCT 7 cut(s) 89, 259, 398, 489, 528, 699, 885
AluI AGCT 7 cut(s) 89, 259, 398, 489, 528, 699, 885
Alw26I GTCTC 2 cut(s) 374, 1041
AlwI GGATC 8 cut(s) 21, 34, 640, 672, 956, 1017, 1055, 1085
Ama87I CYCGRG 1 cut(s) 123
AoxI GGCC 8 cut(s) 127, 221, 315, 469, 502, 543, 893, 1139
ApeKI GCWGC 4 cut(s) 232, 283, 943, 1071
ApoI RAATTY 2 cut(s) 175, 802
ArsI GACNNNNNNTTYG 4 cut(s) 404, 436, 744, 776
AspA2I CCTAGG 1 cut(s) 874
AspLEI GCGC 3 cut(s) 948, 989, 1076
AspS9I GGNCC 5 cut(s) 262, 503, 787, 893, 927
AsuC2I CCSGG 1 cut(s) 816
AsuHPI GGTGA 3 cut(s) 655, 971, 1071
AvaI CYCGRG 1 cut(s) 123
AvaII GGWCC 3 cut(s) 262, 787, 927
AvrII CCTAGG 1 cut(s) 874
BalI TGGCCA 1 cut(s) 545
BamHI GGATCC 1 cut(s) 26
BauI CACGAG 2 cut(s) 631, 739
BbrPI CACGTG 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 118
BbvI GCAGC 4 cut(s) 244, 270, 930, 1058
BccI CCATC 2 cut(s) 114, 376
BceAI ACGGC 8 cut(s) 208, 330, 340, 517, 742, 876, 1018, 1086
BciT130I CCWGG 2 cut(s) 31, 791
BciVI GTATCC 1 cut(s) 1129
BcnI CCSGG 1 cut(s) 816
BcoDI GTCTC 2 cut(s) 374, 1041
BfaI CTAG 3 cut(s) 86, 585, 875
BfuI GTATCC 1 cut(s) 1129
BglI GCCNNNNNGGC 2 cut(s) 510, 542
BisI GCNGC 6 cut(s) 209, 221, 233, 284, 944, 1072
BlnI CCTAGG 1 cut(s) 874
BlsI GCNGC 6 cut(s) 210, 222, 234, 285, 945, 1073
BmcAI AGTACT 1 cut(s) 455
Bme1390I CCNGG 3 cut(s) 31, 791, 816
Bme18I GGWCC 3 cut(s) 262, 787, 927
BmeT110I CYCGRG 1 cut(s) 123
BmgBI CACGTC 3 cut(s) 244, 475, 661
BmgT120I GGNCC 5 cut(s) 262, 503, 787, 893, 927
BmiI GGNNCC 5 cut(s) 28, 160, 505, 872, 894
BmrFI CCNGG 3 cut(s) 31, 791, 816
BmrI ACTGGG 1 cut(s) 525
BmsI GCATC 2 cut(s) 603, 957
BmuI ACTGGG 1 cut(s) 525
BpiI GAAGAC 1 cut(s) 118
BpmI CTGGAG 1 cut(s) 398
BpuMI CCSGG 1 cut(s) 816
BsaAI YACGTR 1 cut(s) 13
BsaHI GRCGYC 3 cut(s) 564, 828, 957
BsaJI CCNNGG 7 cut(s) 130, 312, 390, 540, 553, 874, 982
BsaXI ACNNNNNCTCC 2 cut(s) 491, 521
Bsc4I CCNNNNNNNGG 6 cut(s) 136, 207, 516, 586, 655, 814
Bse118I RCCGGY 2 cut(s) 937, 1141
Bse1I ACTGG 1 cut(s) 520
BseBI CCWGG 2 cut(s) 31, 791
BseDI CCNNGG 7 cut(s) 130, 312, 390, 540, 553, 874, 982
BseGI GGATG 2 cut(s) 834, 885
BseLI CCNNNNNNNGG 6 cut(s) 136, 207, 516, 586, 655, 814
BseMII CTCAG 1 cut(s) 823
BseNI ACTGG 1 cut(s) 520
BseRI GAGGAG 1 cut(s) 1166
BseX3I CGGCCG 2 cut(s) 221, 315
BseXI GCAGC 4 cut(s) 244, 270, 930, 1058
Bsh1236I CGCG 2 cut(s) 989, 1076
Bsh1285I CGRYCG 2 cut(s) 224, 318
BshFI GGCC 8 cut(s) 129, 223, 317, 471, 504, 545, 895, 1141
BsiEI CGRYCG 2 cut(s) 224, 318
BsiHKCI CYCGRG 1 cut(s) 123
BsiSI CCGG 6 cut(s) 510, 705, 815, 938, 954, 1142
BslI CCNNNNNNNGG 6 cut(s) 136, 207, 516, 586, 655, 814
BsmAI GTCTC 2 cut(s) 374, 1041
BsmBI CGTCTC 2 cut(s) 374, 1041
BsnI GGCC 8 cut(s) 129, 223, 317, 471, 504, 545, 895, 1141
BsoBI CYCGRG 1 cut(s) 123
Bsp1407I TGTACA 1 cut(s) 288
Bsp19I CCATGG 2 cut(s) 390, 540
BspACI CCGC 8 cut(s) 208, 211, 220, 268, 309, 935, 1031, 1069
BspANI GGCC 8 cut(s) 129, 223, 317, 471, 504, 545, 895, 1141
BspCNI CTCAG 1 cut(s) 822
BspFNI CGCG 2 cut(s) 989, 1076
BspHI TCATGA 1 cut(s) 771
BspLI GGNNCC 5 cut(s) 28, 160, 505, 872, 894
BspPI GGATC 8 cut(s) 21, 34, 640, 672, 956, 1017, 1055, 1085
BsrFI RCCGGY 2 cut(s) 937, 1141
BsrGI TGTACA 1 cut(s) 288
BsrI ACTGG 1 cut(s) 520
BssAI RCCGGY 2 cut(s) 937, 1141
BssECI CCNNGG 7 cut(s) 130, 312, 390, 540, 553, 874, 982
BssNI GRCGYC 3 cut(s) 564, 828, 957
BssSI CACGAG 2 cut(s) 631, 739
BssT1I CCWWGG 5 cut(s) 130, 390, 540, 874, 982
Bst2BI CACGAG 2 cut(s) 631, 739
Bst2UI CCWGG 2 cut(s) 31, 791
Bst4CI ACNGT 1 cut(s) 352
Bst6I CTCTTC 2 cut(s) 747, 911
BstACI GRCGYC 3 cut(s) 564, 828, 957
BstAPI GCANNNNNTGC 1 cut(s) 280
BstAUI TGTACA 1 cut(s) 288
BstBAI YACGTR 1 cut(s) 13
BstC8I GCNNGC 2 cut(s) 731, 1139
BstDEI CTNAG 1 cut(s) 809
BstDSI CCRYGG 3 cut(s) 312, 390, 540
BstENI CCTNNNNNAGG 1 cut(s) 653
BstF5I GGATG 2 cut(s) 834, 885
BstFNI CGCG 2 cut(s) 989, 1076
BstHHI GCGC 3 cut(s) 948, 989, 1076
BstMAI GTCTC 2 cut(s) 374, 1041
BstMCI CGRYCG 2 cut(s) 224, 318
BstNI CCWGG 2 cut(s) 31, 791
BstSCI CCNGG 3 cut(s) 29, 789, 814
BstUI CGCG 2 cut(s) 989, 1076
BstV1I GCAGC 4 cut(s) 244, 270, 930, 1058
BstV2I GAAGAC 1 cut(s) 118
BstX2I RGATCY 1 cut(s) 26
BstYI RGATCY 1 cut(s) 26
BstZI CGGCCG 2 cut(s) 221, 315
BsuI GTATCC 1 cut(s) 1129
BsuRI GGCC 8 cut(s) 129, 223, 317, 471, 504, 545, 895, 1141
BtgI CCRYGG 3 cut(s) 312, 390, 540
BtrI CACGTC 3 cut(s) 244, 475, 661
BtsCI GGATG 2 cut(s) 834, 885
BtsIMutI CAGTG 1 cut(s) 513
Cac8I GCNNGC 2 cut(s) 731, 1139
CciI TCATGA 1 cut(s) 771
CfoI GCGC 3 cut(s) 948, 989, 1076
Cfr10I RCCGGY 2 cut(s) 937, 1141
Cfr13I GGNCC 5 cut(s) 262, 503, 787, 893, 927
CseI GACGC 2 cut(s) 946, 1065
CsiI ACCWGGT 1 cut(s) 789
Csp6I GTAC 3 cut(s) 57, 289, 454
CviAII CATG 6 cut(s) 292, 391, 541, 721, 763, 772
CviQI GTAC 3 cut(s) 57, 289, 454
DdeI CTNAG 1 cut(s) 809
DrdI GACNNNNNNGTC 1 cut(s) 919
DseDI GACNNNNNNGTC 1 cut(s) 919
EaeI YGGCCR 4 cut(s) 221, 315, 469, 543
EagI CGGCCG 2 cut(s) 221, 315
Eam1104I CTCTTC 2 cut(s) 747, 911
EarI CTCTTC 2 cut(s) 747, 911
EciI GGCGGA 3 cut(s) 226, 298, 1020
EclXI CGGCCG 2 cut(s) 221, 315
Eco130I CCWWGG 5 cut(s) 130, 390, 540, 874, 982
Eco32I GATATC 1 cut(s) 1114
Eco47I GGWCC 3 cut(s) 262, 787, 927
Eco52I CGGCCG 2 cut(s) 221, 315
Eco72I CACGTG 1 cut(s) 13
Eco88I CYCGRG 1 cut(s) 123
EcoNI CCTNNNNNAGG 1 cut(s) 653
EcoO109I RGGNCCY 1 cut(s) 893
EcoRII CCWGG 2 cut(s) 29, 789
EcoRV GATATC 1 cut(s) 1114
EcoT14I CCWWGG 5 cut(s) 130, 390, 540, 874, 982
ErhI CCWWGG 5 cut(s) 130, 390, 540, 874, 982
Esp3I CGTCTC 2 cut(s) 374, 1041
FaeI CATG 6 cut(s) 295, 394, 544, 724, 766, 775
FaiI YATR 7 cut(s) 293, 392, 542, 710, 722, 764, 773
FalI AAGNNNNNCTT 2 cut(s) 473, 505
FatI CATG 6 cut(s) 291, 390, 540, 720, 762, 771
FauI CCCGC 1 cut(s) 942
FblI GTMKAC 3 cut(s) 300, 567, 795
Fnu4HI GCNGC 6 cut(s) 209, 221, 233, 284, 944, 1072
FokI GGATG 2 cut(s) 821, 892
Fsp4HI GCNGC 6 cut(s) 209, 221, 233, 284, 944, 1072
FspBI CTAG 3 cut(s) 86, 585, 875
FspI TGCGCA 1 cut(s) 947
GlaI GCGC 3 cut(s) 947, 988, 1075
GluI GCNGC 6 cut(s) 209, 221, 233, 284, 944, 1072
GsuI CTGGAG 1 cut(s) 398
HaeIII GGCC 8 cut(s) 129, 223, 317, 471, 504, 545, 895, 1141
HapII CCGG 6 cut(s) 510, 705, 815, 938, 954, 1142
HgaI GACGC 2 cut(s) 946, 1065
HhaI GCGC 3 cut(s) 948, 989, 1076
Hin1I GRCGYC 3 cut(s) 564, 828, 957
Hin1II CATG 6 cut(s) 295, 394, 544, 724, 766, 775
Hin6I GCGC 3 cut(s) 946, 987, 1074
HinP1I GCGC 3 cut(s) 946, 987, 1074
HincII GTYRAC 2 cut(s) 301, 796
HindII GTYRAC 2 cut(s) 301, 796
HindIII AAGCTT 1 cut(s) 487
HinfI GANTC 8 cut(s) 214, 305, 431, 465, 599, 759, 913, 1010
HpaII CCGG 6 cut(s) 510, 705, 815, 938, 954, 1142
HphI GGTGA 3 cut(s) 655, 971, 1071
Hpy166II GTNNAC 5 cut(s) 301, 360, 568, 796, 832
Hpy188I TCNGA 9 cut(s) 26, 49, 195, 424, 604, 679, 812, 870, 1111
Hpy188III TCNNGA 5 cut(s) 123, 478, 575, 772, 910
Hpy8I GTNNAC 5 cut(s) 301, 360, 568, 796, 832
HpyAV CCTTC 2 cut(s) 181, 778
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4IV ACGT 9 cut(s) 12, 243, 297, 474, 564, 660, 828, 992, 1085
HpyCH4V TGCA 4 cut(s) 16, 232, 333, 1137
HpyF3I CTNAG 1 cut(s) 809
HpySE526I ACGT 9 cut(s) 12, 243, 297, 474, 564, 660, 828, 992, 1085
Hsp92I GRCGYC 3 cut(s) 564, 828, 957
Hsp92II CATG 6 cut(s) 295, 394, 544, 724, 766, 775
HspAI GCGC 3 cut(s) 946, 987, 1074
LmnI GCTCC 1 cut(s) 1112
Lsp1109I GCAGC 4 cut(s) 244, 270, 930, 1058
LweI GCATC 2 cut(s) 603, 957
MabI ACCWGGT 1 cut(s) 789
MaeI CTAG 3 cut(s) 86, 585, 875
MaeII ACGT 9 cut(s) 12, 243, 297, 474, 564, 660, 828, 992, 1085
MaeIII GTNAC 1 cut(s) 1077
MboII GAAGA 7 cut(s) 123, 424, 622, 664, 764, 898, 968
MflI RGATCY 1 cut(s) 26
MlsI TGGCCA 1 cut(s) 545
MluCI AATT 3 cut(s) 175, 547, 802
MluNI TGGCCA 1 cut(s) 545
MlyI GAGTC 6 cut(s) 299, 440, 459, 593, 768, 907
Mox20I TGGCCA 1 cut(s) 545
MscI TGGCCA 1 cut(s) 545
MseI TTAA 1 cut(s) 591
Msp20I TGGCCA 1 cut(s) 545
MspA1I CMGCKG 2 cut(s) 268, 1071
MspI CCGG 6 cut(s) 510, 705, 815, 938, 954, 1142
MspR9I CCNGG 3 cut(s) 31, 791, 816
MvaI CCWGG 2 cut(s) 31, 791
MvnI CGCG 2 cut(s) 989, 1076
NciI CCSGG 1 cut(s) 816
NcoI CCATGG 2 cut(s) 390, 540
NlaIII CATG 6 cut(s) 295, 394, 544, 724, 766, 775
NlaIV GGNNCC 5 cut(s) 28, 160, 505, 872, 894
NmeAIII GCCGAG 2 cut(s) 447, 534
NmuCI GTSAC 1 cut(s) 1077
NsbI TGCGCA 1 cut(s) 947
PaeR7I CTCGAG 1 cut(s) 123
PagI TCATGA 1 cut(s) 771
PcsI WCGNNNNNNNCGW 7 cut(s) 121, 249, 252, 380, 561, 567, 657
PfeI GAWTC 2 cut(s) 214, 1010
PflFI GACNNNGTC 2 cut(s) 791, 816
PkrI GCNGC 6 cut(s) 210, 222, 234, 285, 945, 1073
PleI GAGTC 6 cut(s) 299, 439, 459, 593, 767, 907
PmaCI CACGTG 1 cut(s) 13
PmlI CACGTG 1 cut(s) 13
PpsI GAGTC 6 cut(s) 299, 439, 459, 593, 767, 907
Ppu21I YACGTR 1 cut(s) 13
Psp6I CCWGG 2 cut(s) 29, 789
PspCI CACGTG 1 cut(s) 13
PspGI CCWGG 2 cut(s) 29, 789
PspN4I GGNNCC 5 cut(s) 28, 160, 505, 872, 894
PspPI GGNCC 5 cut(s) 262, 503, 787, 893, 927
PsuI RGATCY 1 cut(s) 26
PsyI GACNNNGTC 2 cut(s) 791, 816
RsaI GTAC 3 cut(s) 58, 290, 455
RsaNI GTAC 3 cut(s) 57, 289, 454
SalI GTCGAC 2 cut(s) 299, 794
SaqAI TTAA 1 cut(s) 591
SatI GCNGC 6 cut(s) 209, 221, 233, 284, 944, 1072
Sau96I GGNCC 5 cut(s) 262, 503, 787, 893, 927
ScaI AGTACT 1 cut(s) 455
SchI GAGTC 6 cut(s) 299, 440, 459, 593, 768, 907
ScrFI CCNGG 3 cut(s) 31, 791, 816
SexAI ACCWGGT 1 cut(s) 789
SfaNI GCATC 2 cut(s) 603, 957
Sfr274I CTCGAG 1 cut(s) 123
SgrAI CRCCGGYG 1 cut(s) 937
SgrDI CGTCGACG 1 cut(s) 299
SinI GGWCC 3 cut(s) 262, 787, 927
SlaI CTCGAG 1 cut(s) 123
SmlI CTYRAG 1 cut(s) 123
SmoI CTYRAG 1 cut(s) 123
Sse9I AATT 3 cut(s) 175, 547, 802
SsiI CCGC 8 cut(s) 208, 211, 220, 268, 309, 935, 1031, 1069
SspMI CTAG 3 cut(s) 86, 585, 875
StyD4I CCNGG 3 cut(s) 29, 789, 814
StyI CCWWGG 5 cut(s) 130, 390, 540, 874, 982
TaaI ACNGT 1 cut(s) 352
TaiI ACGT 9 cut(s) 15, 246, 300, 477, 567, 663, 831, 995, 1088
TasI AATT 3 cut(s) 175, 547, 802
TatI WGTACW 3 cut(s) 56, 288, 453
TauI GCSGC 2 cut(s) 211, 223
TfiI GAWTC 2 cut(s) 214, 1010
Tru1I TTAA 1 cut(s) 591
Tru9I TTAA 1 cut(s) 591
TscAI CASTG 1 cut(s) 520
TseFI GTSAC 1 cut(s) 1077
TseI GCWGC 4 cut(s) 232, 283, 943, 1071
Tsp45I GTSAC 1 cut(s) 1077
TspDTI ATGAA 4 cut(s) 308, 709, 760, 791
TspGWI ACGGA 2 cut(s) 477, 906
TspRI CASTG 1 cut(s) 520
Tth111I GACNNNGTC 2 cut(s) 791, 816
VpaK11BI GGWCC 3 cut(s) 262, 787, 927
XagI CCTNNNNNAGG 1 cut(s) 653
XapI RAATTY 2 cut(s) 175, 802
XhoI CTCGAG 1 cut(s) 123
XmaJI CCTAGG 1 cut(s) 874
XmiI GTMKAC 3 cut(s) 300, 567, 795
XspI CTAG 3 cut(s) 86, 585, 875
ZraI GACGTC 2 cut(s) 565, 829
ZrmI AGTACT 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.