Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001360

Physical Location & Seq

Genomic Coordinates Forward (+)

76382511 .. 76386473

Gene Structure 3963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G043520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGATGTTCTCTTATGTTTGTTTCCCATATTACCCTTCTTCTCCAAGCACTCAGTGCCCGACTTTGCTTCTCTCCTCTTTGAATCAGCTCTACTGCAAGGCCACCGTTTATCTCAACTCATTGACCTCCATGCTCGACCCCAACCAGACCATCGAAGATGACTTTCTCGGAGCGAAGGTCAGGTGGCAAAGCGAAGTAAGTAAGGGTTCCAATAACTACTGGAATTTGGTGTTGAAGGTTCGGAAAGCCGATAAGCGGCGGATTTTGCGGCCGTATTTGCAGCATATTCTGGACCAGCGGAAGCGAGATTTGCTGTTGTACATGAACGTCGACGACGCCGCCACGGCCGACGACGACTTCCGCAACGTACGGTGGAGGACCGTGCCGTTCACGCACCCATCTACGCTGGAGACTATTGCCATGGAAGCCGATCTCAAATCGAAGATCAAGTCCGATTTGGAGTCGTTTCTCAAAGCCAAGCAGTACAACAACCGACTCGGCCGCGTCTGGAAGCGAAGCTTCTTGCTTTACGGCCCCTCCGGCACTGGGAAATCCAGCTTTATCACCACCATGGCCAATTTCCTCAGCTACGACGTCTACGATCTCGACCTCTCTAAGGTTAAAGACAACTCGGAGTTGAAGATGCTTCTTTTACAGACCACGAGCAAGTTGGTGATCCTCATCGAGGAACTGGATCGGTTCTTCGCCGAGAAATCGACGGCGAGAGTCATGGTGTTCATTATGAACTCGAAGGACCAGGTCGACCCGAATTTCCTCAGACTGGGTCAAATCGACGTCCACGTCCATTTTCCGTTGTGTGATTTCACGGCGTTTCGGAACCTAGGGATGAGCTATTTGGGGGTGAAGGAGCACAATCTATCATTTTACCTCCAATCGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

300

Amino Acids

34.79

Weight (kDa)

8.98

Isoelectric Point (pI)

47.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	175 - 244	1.6e-08	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46620
fragaria_vesca	FvH4_7g17220 FvH4_7g32500
malus_domestica	MD01G1085900.v1.1 MD01G1225700.v1.1 MD02G1229200.v1.1 MD07G1155000.v1.1 MD07G1296200.v1.1
prunus_persica	Prupe.2G193700_v2.0.a1 Prupe.2G315800_v2.0.a1
pyrus_communis	pycom01g23420 pycom07g15210 pycom07g26900
rosa_chinensis	RchiOBHm_Chr1g0360611 RchiOBHm_Chr1g0382341 RchiOBHm_Chr2g0086831 RchiOBHm_Chr2g0139501 RchiOBHm_Chr3g0458211 RchiOBHm_Chr3g0478421 RchiOBHm_Chr4g0427361
rosa_laevigata	RLG00000002572 RLG00000009827 RLG00000026185 RLG00000027795 RLG00000030781
rosa_multiflora	Rmu_sc0000110.1_g000040 Rmu_sc0001436.1_g000033 Rmu_sc0002188.1_g000003 Rmu_sc0002535.1_g000007 Rmu_sc0003020.1_g000016 Rmu_sc0003481.1_g000013 Rmu_sc0004697.1_g000002 Rmu_sc0007558.1_g000001 Rmu_sc0010192.1_g000001 Rmu_sc0015587.1_g000001 Rmu_sc0042341.1_g000002
rosa_roxburghii	Rroxscaffold_2G00093530 Rroxscaffold_4G00278180
rosa_rugosa	Rorug01G0280000 Rorug01G0433500 Rorug02G0149500 Rorug05G0571400
rosa_samantha	Rh1AG292200 Rh1BG257100 Rh1BG414500 Rh1CG274900 Rh1DG287000 Rh1DG446600 Rh5BG487600 Rh5CG511800
rosa_wichuraiana	Rw1G025870 Rw1G041280 Rw5G043520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	800
AatII	GACGTC	2 cut(s)	597, 798
AccI	GTMKAC	3 cut(s)	330, 597, 762
AccII	CGCG	1 cut(s)	504
AciI	CCGC	7 cut(s)	256, 259, 268, 298, 339, 361, 502
AclWI	GGATC	2 cut(s)	670, 702
AcoI	YGGCCR	4 cut(s)	269, 345, 499, 573
AcsI	RAATTY	2 cut(s)	223, 769
AcyI	GRCGYC	3 cut(s)	336, 594, 795
AdeI	CACNNNGTG	1 cut(s)	54
AfaI	GTAC	3 cut(s)	320, 369, 485
AfiI	CCNNNNNNNGG	5 cut(s)	255, 546, 616, 685, 781
AgsI	TTSAA	3 cut(s)	82, 235, 640
AjiI	CACGTC	1 cut(s)	802
AjnI	CCWGG	1 cut(s)	756
AluBI	AGCT	5 cut(s)	88, 519, 558, 588, 852
AluI	AGCT	5 cut(s)	88, 519, 558, 588, 852
Alw21I	GWGCWC	1 cut(s)	873
Alw26I	GTCTC	1 cut(s)	404
AlwI	GGATC	2 cut(s)	670, 702
AoxI	GGCC	6 cut(s)	99, 269, 345, 499, 532, 573
ApeKI	GCWGC	1 cut(s)	280
ApoI	RAATTY	2 cut(s)	223, 769
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
AspA2I	CCTAGG	1 cut(s)	841
AspS9I	GGNCC	4 cut(s)	292, 378, 533, 754
AsuHPI	GGTGA	3 cut(s)	556, 685, 874
AvaII	GGWCC	3 cut(s)	292, 378, 754
AvrII	CCTAGG	1 cut(s)	841
BaeGI	GKGCMC	1 cut(s)	59
BalI	TGGCCA	1 cut(s)	575
BauI	CACGAG	1 cut(s)	661
Bbv12I	GWGCWC	1 cut(s)	873
BbvCI	CCTCAGC	1 cut(s)	584
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	2 cut(s)	158, 406
BceAI	ACGGC	6 cut(s)	256, 360, 370, 547, 735, 843
BciT130I	CCWGG	1 cut(s)	758
BcoDI	GTCTC	1 cut(s)	404
BfaI	CTAG	1 cut(s)	842
BglI	GCCNNNNNGGC	2 cut(s)	344, 540
BisI	GCNGC	5 cut(s)	257, 269, 281, 339, 502
BlnI	CCTAGG	1 cut(s)	841
BlsI	GCNGC	5 cut(s)	258, 270, 282, 340, 503
Bme1390I	CCNGG	1 cut(s)	758
Bme18I	GGWCC	3 cut(s)	292, 378, 754
BmgBI	CACGTC	1 cut(s)	802
BmgT120I	GGNCC	4 cut(s)	292, 378, 533, 754
BmiI	GGNNCC	3 cut(s)	208, 535, 839
BmrFI	CCNGG	1 cut(s)	758
BmrI	ACTGGG	2 cut(s)	555, 791
BmsI	GCATC	1 cut(s)	633
BmuI	ACTGGG	2 cut(s)	555, 791
BpmI	CTGGAG	1 cut(s)	428
Bpu10I	CCTNAGC	1 cut(s)	584
Bsa29I	ATCGAT	1 cut(s)	896
BsaBI	GATNNNNATC	1 cut(s)	680
BsaHI	GRCGYC	3 cut(s)	336, 594, 795
BsaJI	CCNNGG	4 cut(s)	342, 420, 570, 841
BsaXI	ACNNNNNCTCC	4 cut(s)	162, 192, 521, 551
Bsc4I	CCNNNNNNNGG	5 cut(s)	255, 546, 616, 685, 781
Bse1I	ACTGG	4 cut(s)	224, 550, 696, 786
Bse8I	GATNNNNATC	1 cut(s)	680
BseBI	CCWGG	1 cut(s)	758
BseCI	ATCGAT	1 cut(s)	896
BseDI	CCNNGG	4 cut(s)	342, 420, 570, 841
BseGI	GGATG	1 cut(s)	852
BseJI	GATNNNNATC	1 cut(s)	680
BseLI	CCNNNNNNNGG	5 cut(s)	255, 546, 616, 685, 781
BseMII	CTCAG	3 cut(s)	65, 598, 790
BseNI	ACTGG	4 cut(s)	224, 550, 696, 786
BseRI	GAGGAG	1 cut(s)	64
BseSI	GKGCMC	1 cut(s)	59
BseX3I	CGGCCG	3 cut(s)	269, 345, 499
BseXI	GCAGC	1 cut(s)	292
Bsh1236I	CGCG	1 cut(s)	504
Bsh1285I	CGRYCG	3 cut(s)	272, 348, 502
BshFI	GGCC	6 cut(s)	101, 271, 347, 501, 534, 575
BshVI	ATCGAT	1 cut(s)	896
BsiEI	CGRYCG	3 cut(s)	272, 348, 502
BsiHKAI	GWGCWC	1 cut(s)	873
BsiSI	CCGG	1 cut(s)	540
BsiWI	CGTACG	1 cut(s)	367
BslI	CCNNNNNNNGG	5 cut(s)	255, 546, 616, 685, 781
BsmAI	GTCTC	1 cut(s)	404
BsnI	GGCC	6 cut(s)	101, 271, 347, 501, 534, 575
Bsp1286I	GDGCHC	2 cut(s)	59, 873
Bsp1407I	TGTACA	1 cut(s)	318
Bsp143I	GATC	6 cut(s)	430, 444, 601, 675, 694, 897
Bsp19I	CCATGG	2 cut(s)	420, 570
BspACI	CCGC	7 cut(s)	256, 259, 268, 298, 339, 361, 502
BspANI	GGCC	6 cut(s)	101, 271, 347, 501, 534, 575
BspCNI	CTCAG	3 cut(s)	64, 597, 789
BspDI	ATCGAT	1 cut(s)	896
BspFNI	CGCG	1 cut(s)	504
BspLI	GGNNCC	3 cut(s)	208, 535, 839
BspPI	GGATC	2 cut(s)	670, 702
BsrGI	TGTACA	1 cut(s)	318
BsrI	ACTGG	4 cut(s)	224, 550, 696, 786
BssECI	CCNNGG	4 cut(s)	342, 420, 570, 841
BssMI	GATC	6 cut(s)	430, 444, 601, 675, 694, 897
BssNI	GRCGYC	3 cut(s)	336, 594, 795
BssSI	CACGAG	1 cut(s)	661
BssT1I	CCWWGG	3 cut(s)	420, 570, 841
Bst2BI	CACGAG	1 cut(s)	661
Bst2UI	CCWGG	1 cut(s)	758
Bst4CI	ACNGT	3 cut(s)	106, 372, 382
BstACI	GRCGYC	3 cut(s)	336, 594, 795
BstAPI	GCANNNNNTGC	1 cut(s)	54
BstAUI	TGTACA	1 cut(s)	318
BstDEI	CTNAG	4 cut(s)	51, 584, 615, 776
BstDSI	CCRYGG	3 cut(s)	342, 420, 570
BstENI	CCTNNNNNAGG	2 cut(s)	614, 683
BstF5I	GGATG	1 cut(s)	852
BstFNI	CGCG	1 cut(s)	504
BstKTI	GATC	6 cut(s)	433, 447, 604, 678, 697, 900
BstMAI	GTCTC	1 cut(s)	404
BstMBI	GATC	6 cut(s)	430, 444, 601, 675, 694, 897
BstMCI	CGRYCG	3 cut(s)	272, 348, 502
BstMWI	GCNNNNNNNGC	8 cut(s)	54, 265, 277, 310, 344, 391, 425, 540
BstNI	CCWGG	1 cut(s)	758
BstSCI	CCNGG	1 cut(s)	756
BstSLI	GKGCMC	1 cut(s)	59
BstUI	CGCG	1 cut(s)	504
BstV1I	GCAGC	1 cut(s)	292
BstZI	CGGCCG	3 cut(s)	269, 345, 499
Bsu15I	ATCGAT	1 cut(s)	896
BsuRI	GGCC	6 cut(s)	101, 271, 347, 501, 534, 575
BsuTUI	ATCGAT	1 cut(s)	896
BtgI	CCRYGG	3 cut(s)	342, 420, 570
BtrI	CACGTC	1 cut(s)	802
BtsCI	GGATG	1 cut(s)	852
BtsIMutI	CAGTG	2 cut(s)	59, 543
Cfr13I	GGNCC	4 cut(s)	292, 378, 533, 754
ClaI	ATCGAT	1 cut(s)	896
CseI	GACGC	2 cut(s)	344, 493
CsiI	ACCWGGT	1 cut(s)	756
Csp6I	GTAC	3 cut(s)	319, 368, 484
CviAII	CATG	5 cut(s)	130, 322, 421, 571, 730
CviQI	GTAC	3 cut(s)	319, 368, 484
DdeI	CTNAG	4 cut(s)	51, 584, 615, 776
DpnI	GATC	6 cut(s)	432, 446, 603, 677, 696, 899
DpnII	GATC	6 cut(s)	430, 444, 601, 675, 694, 897
DraIII	CACNNNGTG	1 cut(s)	54
DrdI	GACNNNNNNGTC	1 cut(s)	800
DseDI	GACNNNNNNGTC	1 cut(s)	800
EaeI	YGGCCR	4 cut(s)	269, 345, 499, 573
EagI	CGGCCG	3 cut(s)	269, 345, 499
EciI	GGCGGA	1 cut(s)	274
EclXI	CGGCCG	3 cut(s)	269, 345, 499
Eco130I	CCWWGG	3 cut(s)	420, 570, 841
Eco47I	GGWCC	3 cut(s)	292, 378, 754
Eco52I	CGGCCG	3 cut(s)	269, 345, 499
EcoNI	CCTNNNNNAGG	2 cut(s)	614, 683
EcoRII	CCWGG	1 cut(s)	756
EcoT14I	CCWWGG	3 cut(s)	420, 570, 841
ErhI	CCWWGG	3 cut(s)	420, 570, 841
FaeI	CATG	5 cut(s)	133, 325, 424, 574, 733
FaiI	YATR	9 cut(s)	15, 28, 131, 285, 323, 422, 572, 731, 743
FalI	AAGNNNNNCTT	2 cut(s)	503, 535
FatI	CATG	5 cut(s)	129, 321, 420, 570, 729
FblI	GTMKAC	3 cut(s)	330, 597, 762
Fnu4HI	GCNGC	5 cut(s)	257, 269, 281, 339, 502
FokI	GGATG	1 cut(s)	859
Fsp4HI	GCNGC	5 cut(s)	257, 269, 281, 339, 502
FspBI	CTAG	1 cut(s)	842
GluI	GCNGC	5 cut(s)	257, 269, 281, 339, 502
GsuI	CTGGAG	1 cut(s)	428
HaeIII	GGCC	6 cut(s)	101, 271, 347, 501, 534, 575
HapII	CCGG	1 cut(s)	540
HgaI	GACGC	2 cut(s)	344, 493
Hin1I	GRCGYC	3 cut(s)	336, 594, 795
Hin1II	CATG	5 cut(s)	133, 325, 424, 574, 733
HincII	GTYRAC	2 cut(s)	331, 763
HindII	GTYRAC	2 cut(s)	331, 763
HindIII	AAGCTT	1 cut(s)	517
HinfI	GANTC	4 cut(s)	82, 461, 495, 726
HpaII	CCGG	1 cut(s)	540
HphI	GGTGA	3 cut(s)	556, 685, 874
Hpy166II	GTNNAC	5 cut(s)	331, 390, 598, 763, 799
Hpy188I	TCNGA	6 cut(s)	170, 243, 454, 634, 779, 837
Hpy188III	TCNNGA	3 cut(s)	290, 508, 605
Hpy8I	GTNNAC	5 cut(s)	331, 390, 598, 763, 799
Hpy99I	CGWCG	8 cut(s)	332, 335, 338, 353, 356, 596, 721, 797
HpyAV	CCTTC	5 cut(s)	45, 169, 229, 745, 859
HpyCH4III	ACNGT	3 cut(s)	106, 372, 382
HpyCH4IV	ACGT	5 cut(s)	327, 366, 594, 795, 801
HpyCH4V	TGCA	2 cut(s)	96, 280
HpyF10VI	GCNNNNNNNGC	8 cut(s)	54, 265, 277, 310, 344, 391, 425, 540
HpyF3I	CTNAG	4 cut(s)	51, 584, 615, 776
HpySE526I	ACGT	5 cut(s)	327, 366, 594, 795, 801
Hsp92I	GRCGYC	3 cut(s)	336, 594, 795
Hsp92II	CATG	5 cut(s)	133, 325, 424, 574, 733
Kzo9I	GATC	6 cut(s)	430, 444, 601, 675, 694, 897
LmnI	GCTCC	2 cut(s)	170, 868
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	1 cut(s)	633
MabI	ACCWGGT	1 cut(s)	756
MaeI	CTAG	1 cut(s)	842
MaeII	ACGT	5 cut(s)	327, 366, 594, 795, 801
MalI	GATC	6 cut(s)	432, 446, 603, 677, 696, 899
MboI	GATC	6 cut(s)	430, 444, 601, 675, 694, 897
MboII	GAAGA	5 cut(s)	30, 167, 454, 652, 694
MhlI	GDGCHC	2 cut(s)	59, 873
MlsI	TGGCCA	1 cut(s)	575
MluCI	AATT	3 cut(s)	223, 577, 769
MluNI	TGGCCA	1 cut(s)	575
MlyI	GAGTC	3 cut(s)	470, 489, 735
Mox20I	TGGCCA	1 cut(s)	575
MscI	TGGCCA	1 cut(s)	575
MseI	TTAA	1 cut(s)	621
MslI	CAYNNNNRTG	1 cut(s)	569
Msp20I	TGGCCA	1 cut(s)	575
MspA1I	CMGCKG	1 cut(s)	298
MspI	CCGG	1 cut(s)	540
MspR9I	CCNGG	1 cut(s)	758
MvaI	CCWGG	1 cut(s)	758
MvnI	CGCG	1 cut(s)	504
MwoI	GCNNNNNNNGC	8 cut(s)	54, 265, 277, 310, 344, 391, 425, 540
NcoI	CCATGG	2 cut(s)	420, 570
NdeII	GATC	6 cut(s)	430, 444, 601, 675, 694, 897
NlaIII	CATG	5 cut(s)	133, 325, 424, 574, 733
NlaIV	GGNNCC	3 cut(s)	208, 535, 839
NmeAIII	GCCGAG	2 cut(s)	477, 733
PcsI	WCGNNNNNNNCGW	2 cut(s)	597, 798
PfeI	GAWTC	1 cut(s)	82
Pfl23II	CGTACG	1 cut(s)	367
PflFI	GACNNNGTC	2 cut(s)	758, 783
PkrI	GCNGC	5 cut(s)	258, 270, 282, 340, 503
PleI	GAGTC	3 cut(s)	469, 489, 734
PpsI	GAGTC	3 cut(s)	469, 489, 734
Psp6I	CCWGG	1 cut(s)	756
PspGI	CCWGG	1 cut(s)	756
PspLI	CGTACG	1 cut(s)	367
PspN4I	GGNNCC	3 cut(s)	208, 535, 839
PspPI	GGNCC	4 cut(s)	292, 378, 533, 754
PsyI	GACNNNGTC	2 cut(s)	758, 783
RsaI	GTAC	3 cut(s)	320, 369, 485
RsaNI	GTAC	3 cut(s)	319, 368, 484
RseI	CAYNNNNRTG	1 cut(s)	569
SalI	GTCGAC	2 cut(s)	329, 761
SaqAI	TTAA	1 cut(s)	621
SatI	GCNGC	5 cut(s)	257, 269, 281, 339, 502
Sau3AI	GATC	6 cut(s)	430, 444, 601, 675, 694, 897
Sau96I	GGNCC	4 cut(s)	292, 378, 533, 754
SchI	GAGTC	3 cut(s)	470, 489, 735
ScrFI	CCNGG	1 cut(s)	758
SduI	GDGCHC	2 cut(s)	59, 873
SexAI	ACCWGGT	1 cut(s)	756
SfaNI	GCATC	1 cut(s)	633
SgrDI	CGTCGACG	1 cut(s)	329
SinI	GGWCC	3 cut(s)	292, 378, 754
SmiMI	CAYNNNNRTG	1 cut(s)	569
Sse9I	AATT	3 cut(s)	223, 577, 769
SsiI	CCGC	7 cut(s)	256, 259, 268, 298, 339, 361, 502
SspMI	CTAG	1 cut(s)	842
StyD4I	CCNGG	1 cut(s)	756
StyI	CCWWGG	3 cut(s)	420, 570, 841
TaaI	ACNGT	3 cut(s)	106, 372, 382
TaiI	ACGT	5 cut(s)	330, 369, 597, 798, 804
TasI	AATT	3 cut(s)	223, 577, 769
TatI	WGTACW	2 cut(s)	318, 483
TauI	GCSGC	4 cut(s)	259, 271, 341, 504
TfiI	GAWTC	1 cut(s)	82
Tru1I	TTAA	1 cut(s)	621
Tru9I	TTAA	1 cut(s)	621
TscAI	CASTG	2 cut(s)	59, 550
TseI	GCWGC	1 cut(s)	280
TspDTI	ATGAA	3 cut(s)	338, 727, 758
TspGWI	ACGGA	1 cut(s)	801
TspRI	CASTG	2 cut(s)	59, 550
Tth111I	GACNNNGTC	2 cut(s)	758, 783
VpaK11BI	GGWCC	3 cut(s)	292, 378, 754
XagI	CCTNNNNNAGG	2 cut(s)	614, 683
XapI	RAATTY	2 cut(s)	223, 769
XcmI	CCANNNNNNNNNTGG	1 cut(s)	667
XmaJI	CCTAGG	1 cut(s)	841
XmiI	GTMKAC	3 cut(s)	330, 597, 762
XspI	CTAG	1 cut(s)	842
ZraI	GACGTC	2 cut(s)	595, 796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.