Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015587.1

Orthogroup ID

OG0001360

Physical Location & Seq

Genomic Coordinates Reverse (-)

545 .. 1206

Gene Structure 662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015587.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgaacatcgatgactccgccatggccggcgacgacttccgcaacgcgcggtggaggactgtgccgttcacgcacccatctacactggagatgattgccatggaagccgatctcaaatcgaagatcaagtccgatttggagtcatttctcaaagccaagcagtactacaaccgactcggccgcaccacgagcaagtcggtgatcctcatcgaggacctggagcagttcttcgccaagaaatcaacggcggtcagcttctccggcatatcgaacttcatggacggcttgctcaacgcgtgctacgccgaagagagagtcatggtgttcatgatgaacttgaaggaccaggtcgacctgaatttccttaggccgggtccgatcgacgtccacatccattttccttttgagtcggaaatcgcgatcgaagaccttgaaccgggagctttgaactgcgtcggagtggctgtccgtacaaaaagcggtggagaagaagatcgagtgtggggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

169

Amino Acids

19.05

Weight (kDa)

4.99

Isoelectric Point (pI)

45.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46620
fragaria_vesca	FvH4_7g17220 FvH4_7g32500
malus_domestica	MD01G1085900.v1.1 MD01G1225700.v1.1 MD02G1229200.v1.1 MD07G1155000.v1.1 MD07G1296200.v1.1
prunus_persica	Prupe.2G193700_v2.0.a1 Prupe.2G315800_v2.0.a1
pyrus_communis	pycom01g23420 pycom07g15210 pycom07g26900
rosa_chinensis	RchiOBHm_Chr1g0360611 RchiOBHm_Chr1g0382341 RchiOBHm_Chr2g0086831 RchiOBHm_Chr2g0139501 RchiOBHm_Chr3g0458211 RchiOBHm_Chr3g0478421 RchiOBHm_Chr4g0427361
rosa_laevigata	RLG00000002572 RLG00000009827 RLG00000026185 RLG00000027795 RLG00000030781
rosa_multiflora	Rmu_sc0000110.1_g000040 Rmu_sc0001436.1_g000033 Rmu_sc0002188.1_g000003 Rmu_sc0002535.1_g000007 Rmu_sc0003020.1_g000016 Rmu_sc0003481.1_g000013 Rmu_sc0004697.1_g000002 Rmu_sc0007558.1_g000001 Rmu_sc0010192.1_g000001 Rmu_sc0015587.1_g000001 Rmu_sc0042341.1_g000002
rosa_roxburghii	Rroxscaffold_2G00093530 Rroxscaffold_4G00278180
rosa_rugosa	Rorug01G0280000 Rorug01G0433500 Rorug02G0149500 Rorug05G0571400
rosa_samantha	Rh1AG292200 Rh1BG257100 Rh1BG414500 Rh1CG274900 Rh1DG287000 Rh1DG446600 Rh5BG487600 Rh5CG511800
rosa_wichuraiana	Rw1G025870 Rw1G041280 Rw5G043520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	387
AccI	GTMKAC	1 cut(s)	351
AccII	CGCG	4 cut(s)	47, 49, 296, 419
AciI	CCGC	6 cut(s)	18, 40, 49, 181, 248, 480
AclWI	GGATC	1 cut(s)	196
AcoI	YGGCCR	2 cut(s)	24, 178
AcsI	RAATTY	1 cut(s)	358
AcyI	GRCGYC	1 cut(s)	384
AfaI	GTAC	2 cut(s)	164, 472
AfiI	CCNNNNNNNGG	3 cut(s)	211, 370, 436
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	3 cut(s)	340, 434, 448
AjnI	CCWGG	2 cut(s)	216, 345
AluBI	AGCT	2 cut(s)	255, 443
AluI	AGCT	2 cut(s)	255, 443
AlwI	GGATC	1 cut(s)	196
AoxI	GGCC	3 cut(s)	24, 178, 368
ApoI	RAATTY	1 cut(s)	358
ArsI	GACNNNNNNTTYG	4 cut(s)	113, 145, 300, 332
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	3 cut(s)	214, 343, 374
AsuC2I	CCSGG	2 cut(s)	372, 438
AsuHPI	GGTGA	1 cut(s)	211
AvaII	GGWCC	3 cut(s)	214, 343, 374
AxyI	CCTNAGG	1 cut(s)	365
BauI	CACGAG	1 cut(s)	187
BbsI	GAAGAC	1 cut(s)	432
BccI	CCATC	1 cut(s)	85
BceAI	ACGGC	3 cut(s)	49, 261, 298
BciT130I	CCWGG	2 cut(s)	218, 347
BcnI	CCSGG	2 cut(s)	372, 438
BisI	GCNGC	1 cut(s)	181
BlsI	GCNGC	1 cut(s)	182
BmcAI	AGTACT	1 cut(s)	164
Bme1390I	CCNGG	4 cut(s)	218, 347, 372, 438
Bme18I	GGWCC	3 cut(s)	214, 343, 374
BmgT120I	GGNCC	3 cut(s)	214, 343, 374
BmiI	GGNNCC	1 cut(s)	375
BmrFI	CCNGG	4 cut(s)	218, 347, 372, 438
BpiI	GAAGAC	1 cut(s)	432
BpmI	CTGGAG	2 cut(s)	107, 239
BpuMI	CCSGG	2 cut(s)	372, 438
Bsa29I	ATCGAT	1 cut(s)	9
BsaBI	GATNNNNATC	1 cut(s)	206
BsaHI	GRCGYC	1 cut(s)	384
BsaJI	CCNNGG	2 cut(s)	21, 99
BsaXI	ACNNNNNCTCC	2 cut(s)	450, 480
Bsc4I	CCNNNNNNNGG	3 cut(s)	211, 370, 436
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	90
Bse21I	CCTNAGG	1 cut(s)	365
Bse8I	GATNNNNATC	1 cut(s)	206
BseBI	CCWGG	2 cut(s)	218, 347
BseCI	ATCGAT	1 cut(s)	9
BseDI	CCNNGG	2 cut(s)	21, 99
BseGI	GGATG	1 cut(s)	390
BseJI	GATNNNNATC	1 cut(s)	206
BseLI	CCNNNNNNNGG	3 cut(s)	211, 370, 436
BseNI	ACTGG	1 cut(s)	90
BseX3I	CGGCCG	1 cut(s)	178
Bsh1236I	CGCG	4 cut(s)	47, 49, 296, 419
Bsh1285I	CGRYCG	3 cut(s)	181, 381, 423
BshFI	GGCC	3 cut(s)	26, 180, 370
BshVI	ATCGAT	1 cut(s)	9
BsiEI	CGRYCG	3 cut(s)	181, 381, 423
BsiSI	CCGG	4 cut(s)	27, 261, 371, 437
BslI	CCNNNNNNNGG	3 cut(s)	211, 370, 436
BsnI	GGCC	3 cut(s)	26, 180, 370
Bsp143I	GATC	6 cut(s)	109, 123, 201, 378, 420, 493
Bsp19I	CCATGG	2 cut(s)	21, 99
Bsp68I	TCGCGA	1 cut(s)	419
BspACI	CCGC	6 cut(s)	18, 40, 49, 181, 248, 480
BspANI	GGCC	3 cut(s)	26, 180, 370
BspDI	ATCGAT	1 cut(s)	9
BspFNI	CGCG	4 cut(s)	47, 49, 296, 419
BspHI	TCATGA	1 cut(s)	327
BspLI	GGNNCC	1 cut(s)	375
BspPI	GGATC	1 cut(s)	196
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	90
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	2 cut(s)	21, 99
BssMI	GATC	6 cut(s)	109, 123, 201, 378, 420, 493
BssNI	GRCGYC	1 cut(s)	384
BssSI	CACGAG	1 cut(s)	187
BssT1I	CCWWGG	2 cut(s)	21, 99
Bst2BI	CACGAG	1 cut(s)	187
Bst2UI	CCWGG	2 cut(s)	218, 347
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	303
BstACI	GRCGYC	1 cut(s)	384
BstC8I	GCNNGC	3 cut(s)	28, 287, 298
BstDEI	CTNAG	1 cut(s)	365
BstDSI	CCRYGG	2 cut(s)	21, 99
BstENI	CCTNNNNNAGG	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	390
BstFNI	CGCG	4 cut(s)	47, 49, 296, 419
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	6 cut(s)	112, 126, 204, 381, 423, 496
BstMBI	GATC	6 cut(s)	109, 123, 201, 378, 420, 493
BstMCI	CGRYCG	3 cut(s)	181, 381, 423
BstMWI	GCNNNNNNNGC	5 cut(s)	70, 104, 189, 261, 302
BstNI	CCWGG	2 cut(s)	218, 347
BstSCI	CCNGG	4 cut(s)	216, 345, 370, 436
BstUI	CGCG	4 cut(s)	47, 49, 296, 419
BstV2I	GAAGAC	1 cut(s)	432
BstZI	CGGCCG	1 cut(s)	178
Bsu15I	ATCGAT	1 cut(s)	9
Bsu36I	CCTNAGG	1 cut(s)	365
BsuRI	GGCC	3 cut(s)	26, 180, 370
BsuTUI	ATCGAT	1 cut(s)	9
BtgI	CCRYGG	2 cut(s)	21, 99
BtsCI	GGATG	1 cut(s)	390
BtsIMutI	CAGTG	1 cut(s)	83
BtuMI	TCGCGA	1 cut(s)	419
Cac8I	GCNNGC	3 cut(s)	28, 287, 298
CciI	TCATGA	1 cut(s)	327
CfoI	GCGC	1 cut(s)	49
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	3 cut(s)	214, 343, 374
ClaI	ATCGAT	1 cut(s)	9
CseI	GACGC	1 cut(s)	442
CsiI	ACCWGGT	1 cut(s)	345
Csp6I	GTAC	2 cut(s)	163, 471
CviAII	CATG	5 cut(s)	22, 100, 277, 319, 328
CviJI	RGCY	9 cut(s)	26, 107, 155, 180, 255, 285, 370, 443, 464
CviKI_1	RGCY	9 cut(s)	26, 107, 155, 180, 255, 285, 370, 443, 464
CviQI	GTAC	2 cut(s)	163, 471
DdeI	CTNAG	1 cut(s)	365
DpnI	GATC	6 cut(s)	111, 125, 203, 380, 422, 495
DpnII	GATC	6 cut(s)	109, 123, 201, 378, 420, 493
EaeI	YGGCCR	2 cut(s)	24, 178
EagI	CGGCCG	1 cut(s)	178
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
EciI	GGCGGA	1 cut(s)	7
EclXI	CGGCCG	1 cut(s)	178
Eco130I	CCWWGG	2 cut(s)	21, 99
Eco47I	GGWCC	3 cut(s)	214, 343, 374
Eco52I	CGGCCG	1 cut(s)	178
Eco81I	CCTNAGG	1 cut(s)	365
EcoNI	CCTNNNNNAGG	1 cut(s)	209
EcoO109I	RGGNCCY	1 cut(s)	214
EcoRII	CCWGG	2 cut(s)	216, 345
EcoT14I	CCWWGG	2 cut(s)	21, 99
ErhI	CCWWGG	2 cut(s)	21, 99
FaeI	CATG	5 cut(s)	25, 103, 280, 322, 331
FaiI	YATR	6 cut(s)	23, 101, 266, 278, 320, 329
FatI	CATG	5 cut(s)	21, 99, 276, 318, 327
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	1 cut(s)	181
FokI	GGATG	1 cut(s)	377
Fsp4HI	GCNGC	1 cut(s)	181
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	181
GsuI	CTGGAG	2 cut(s)	107, 239
HaeIII	GGCC	3 cut(s)	26, 180, 370
HapII	CCGG	4 cut(s)	27, 261, 371, 437
HgaI	GACGC	1 cut(s)	442
HhaI	GCGC	1 cut(s)	49
Hin1I	GRCGYC	1 cut(s)	384
Hin1II	CATG	5 cut(s)	25, 103, 280, 322, 331
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	5 cut(s)	14, 140, 174, 315, 407
HpaII	CCGG	4 cut(s)	27, 261, 371, 437
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	3 cut(s)	69, 352, 388
Hpy188I	TCNGA	4 cut(s)	133, 378, 412, 458
Hpy188III	TCNNGA	2 cut(s)	328, 418
Hpy8I	GTNNAC	3 cut(s)	69, 352, 388
Hpy99I	CGWCG	3 cut(s)	35, 386, 458
HpyAV	CCTTC	1 cut(s)	334
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4IV	ACGT	1 cut(s)	384
HpyF10VI	GCNNNNNNNGC	5 cut(s)	70, 104, 189, 261, 302
HpyF3I	CTNAG	1 cut(s)	365
HpySE526I	ACGT	1 cut(s)	384
Hsp92I	GRCGYC	1 cut(s)	384
Hsp92II	CATG	5 cut(s)	25, 103, 280, 322, 331
HspAI	GCGC	1 cut(s)	47
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
Kzo9I	GATC	6 cut(s)	109, 123, 201, 378, 420, 493
LmnI	GCTCC	2 cut(s)	220, 440
MabI	ACCWGGT	1 cut(s)	345
MaeII	ACGT	1 cut(s)	384
MalI	GATC	6 cut(s)	111, 125, 203, 380, 422, 495
MboI	GATC	6 cut(s)	109, 123, 201, 378, 420, 493
MboII	GAAGA	6 cut(s)	133, 220, 320, 437, 500, 503
MluCI	AATT	1 cut(s)	358
MluI	ACGCGT	1 cut(s)	294
MlyI	GAGTC	5 cut(s)	8, 149, 168, 324, 416
MmeI	TCCRAC	2 cut(s)	390, 436
MnlI	CCTC	3 cut(s)	48, 205, 215
MroNI	GCCGGC	1 cut(s)	26
MspI	CCGG	4 cut(s)	27, 261, 371, 437
MspR9I	CCNGG	4 cut(s)	218, 347, 372, 438
MvaI	CCWGG	2 cut(s)	218, 347
MvnI	CGCG	4 cut(s)	47, 49, 296, 419
MwoI	GCNNNNNNNGC	5 cut(s)	70, 104, 189, 261, 302
NaeI	GCCGGC	1 cut(s)	28
NciI	CCSGG	2 cut(s)	372, 438
NcoI	CCATGG	2 cut(s)	21, 99
NdeII	GATC	6 cut(s)	109, 123, 201, 378, 420, 493
NgoMIV	GCCGGC	1 cut(s)	26
NlaIII	CATG	5 cut(s)	25, 103, 280, 322, 331
NlaIV	GGNNCC	1 cut(s)	375
NmeAIII	GCCGAG	1 cut(s)	156
NruI	TCGCGA	1 cut(s)	419
PagI	TCATGA	1 cut(s)	327
PcsI	WCGNNNNNNNCGW	1 cut(s)	416
PdiI	GCCGGC	1 cut(s)	28
PflFI	GACNNNGTC	1 cut(s)	347
PkrI	GCNGC	1 cut(s)	182
Ple19I	CGATCG	2 cut(s)	381, 423
PleI	GAGTC	5 cut(s)	8, 148, 168, 323, 415
PpsI	GAGTC	5 cut(s)	8, 148, 168, 323, 415
PpuMI	RGGWCCY	1 cut(s)	214
Psp5II	RGGWCCY	1 cut(s)	214
Psp6I	CCWGG	2 cut(s)	216, 345
PspGI	CCWGG	2 cut(s)	216, 345
PspN4I	GGNNCC	1 cut(s)	375
PspPI	GGNCC	3 cut(s)	214, 343, 374
PspPPI	RGGWCCY	1 cut(s)	214
PsyI	GACNNNGTC	1 cut(s)	347
PvuI	CGATCG	2 cut(s)	381, 423
RruI	TCGCGA	1 cut(s)	419
RsaI	GTAC	2 cut(s)	164, 472
RsaNI	GTAC	2 cut(s)	163, 471
SalI	GTCGAC	1 cut(s)	350
SatI	GCNGC	1 cut(s)	181
Sau3AI	GATC	6 cut(s)	109, 123, 201, 378, 420, 493
Sau96I	GGNCC	3 cut(s)	214, 343, 374
ScaI	AGTACT	1 cut(s)	164
SchI	GAGTC	5 cut(s)	8, 149, 168, 324, 416
ScrFI	CCNGG	4 cut(s)	218, 347, 372, 438
SetI	ASST	7 cut(s)	219, 257, 351, 357, 387, 432, 445
SexAI	ACCWGGT	1 cut(s)	345
SinI	GGWCC	3 cut(s)	214, 343, 374
Sse9I	AATT	1 cut(s)	358
SsiI	CCGC	6 cut(s)	18, 40, 49, 181, 248, 480
StyD4I	CCNGG	4 cut(s)	216, 345, 370, 436
StyI	CCWWGG	2 cut(s)	21, 99
TaaI	ACNGT	1 cut(s)	61
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	8 cut(s)	9, 119, 210, 269, 351, 381, 423, 496
TasI	AATT	1 cut(s)	358
TatI	WGTACW	1 cut(s)	162
TauI	GCSGC	1 cut(s)	183
TscAI	CASTG	1 cut(s)	90
TspDTI	ATGAA	4 cut(s)	17, 265, 316, 347
TspGWI	ACGGA	1 cut(s)	458
TspRI	CASTG	1 cut(s)	90
Tth111I	GACNNNGTC	1 cut(s)	347
VpaK11BI	GGWCC	3 cut(s)	214, 343, 374
XagI	CCTNNNNNAGG	1 cut(s)	209
XapI	RAATTY	1 cut(s)	358
XmiI	GTMKAC	1 cut(s)	351
ZraI	GACGTC	1 cut(s)	385
ZrmI	AGTACT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.