Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002188.1

Orthogroup ID

OG0001360

Physical Location & Seq

Genomic Coordinates Forward (+)

15057 .. 15470

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002188.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atggccaatttcctctgctacgacgtctacgatctcgacctctctagggttaaagacgactcagagttgaagatgcttcttttacagaccacgagcaagtcggtgatcctcatcgaggacctggatcagttcttcgccgagaaatcaacggcggtcagcttctccggcatatcgaacttcatggacggcttgctcaactcgtgctacgccgaagagagagtcatggtgttcatgatgaacttgaaggaccaggtcgacctgaatttccttagaccgggtccgatcgacgtccacatccattttccttttgagtcggaaatcgcgatcgaagaccttgaaccgggagctttgaactgcgtcggagtggctgtccgtacagaaagcagtggagaagaagatcgagtgtggggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

137

Amino Acids

15.45

Weight (kDa)

4.22

Isoelectric Point (pI)

50.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46620
fragaria_vesca	FvH4_7g17220 FvH4_7g32500
malus_domestica	MD01G1085900.v1.1 MD01G1225700.v1.1 MD02G1229200.v1.1 MD07G1155000.v1.1 MD07G1296200.v1.1
prunus_persica	Prupe.2G193700_v2.0.a1 Prupe.2G315800_v2.0.a1
pyrus_communis	pycom01g23420 pycom07g15210 pycom07g26900
rosa_chinensis	RchiOBHm_Chr1g0360611 RchiOBHm_Chr1g0382341 RchiOBHm_Chr2g0086831 RchiOBHm_Chr2g0139501 RchiOBHm_Chr3g0458211 RchiOBHm_Chr3g0478421 RchiOBHm_Chr4g0427361
rosa_laevigata	RLG00000002572 RLG00000009827 RLG00000026185 RLG00000027795 RLG00000030781
rosa_multiflora	Rmu_sc0000110.1_g000040 Rmu_sc0001436.1_g000033 Rmu_sc0002188.1_g000003 Rmu_sc0002535.1_g000007 Rmu_sc0003020.1_g000016 Rmu_sc0003481.1_g000013 Rmu_sc0004697.1_g000002 Rmu_sc0007558.1_g000001 Rmu_sc0010192.1_g000001 Rmu_sc0015587.1_g000001 Rmu_sc0042341.1_g000002
rosa_roxburghii	Rroxscaffold_2G00093530 Rroxscaffold_4G00278180
rosa_rugosa	Rorug01G0280000 Rorug01G0433500 Rorug02G0149500 Rorug05G0571400
rosa_samantha	Rh1AG292200 Rh1BG257100 Rh1BG414500 Rh1CG274900 Rh1DG287000 Rh1DG446600 Rh5BG487600 Rh5CG511800
rosa_wichuraiana	Rw1G025870 Rw1G041280 Rw5G043520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	27, 291
AccI	GTMKAC	2 cut(s)	27, 255
AccII	CGCG	1 cut(s)	323
AciI	CCGC	1 cut(s)	152
AclWI	GGATC	2 cut(s)	100, 132
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	262
AcyI	GRCGYC	2 cut(s)	24, 288
AfaI	GTAC	1 cut(s)	376
AfiI	CCNNNNNNNGG	4 cut(s)	46, 115, 274, 340
AgsI	TTSAA	4 cut(s)	70, 244, 338, 352
AjnI	CCWGG	2 cut(s)	120, 249
AluBI	AGCT	2 cut(s)	159, 347
AluI	AGCT	2 cut(s)	159, 347
AlwI	GGATC	2 cut(s)	100, 132
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	262
ArsI	GACNNNNNNTTYG	2 cut(s)	204, 236
AspS9I	GGNCC	3 cut(s)	118, 247, 278
AsuC2I	CCSGG	2 cut(s)	276, 342
AsuHPI	GGTGA	1 cut(s)	115
AvaII	GGWCC	3 cut(s)	118, 247, 278
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	2 cut(s)	91, 199
BbsI	GAAGAC	1 cut(s)	336
BceAI	ACGGC	2 cut(s)	165, 202
BciT130I	CCWGG	2 cut(s)	122, 251
BcnI	CCSGG	2 cut(s)	276, 342
BfaI	CTAG	1 cut(s)	45
Bme1390I	CCNGG	4 cut(s)	122, 251, 276, 342
Bme18I	GGWCC	3 cut(s)	118, 247, 278
BmgT120I	GGNCC	3 cut(s)	118, 247, 278
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	4 cut(s)	122, 251, 276, 342
BmsI	GCATC	1 cut(s)	63
BpiI	GAAGAC	1 cut(s)	336
BpuMI	CCSGG	2 cut(s)	276, 342
BsaBI	GATNNNNATC	1 cut(s)	110
BsaHI	GRCGYC	2 cut(s)	24, 288
BsaXI	ACNNNNNCTCC	2 cut(s)	354, 384
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 115, 274, 340
Bse8I	GATNNNNATC	1 cut(s)	110
BseBI	CCWGG	2 cut(s)	122, 251
BseGI	GGATG	1 cut(s)	294
BseJI	GATNNNNATC	1 cut(s)	110
BseLI	CCNNNNNNNGG	4 cut(s)	46, 115, 274, 340
BseMII	CTCAG	1 cut(s)	75
Bsh1236I	CGCG	1 cut(s)	323
Bsh1285I	CGRYCG	2 cut(s)	285, 327
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	2 cut(s)	285, 327
BsiSI	CCGG	3 cut(s)	165, 275, 341
BslI	CCNNNNNNNGG	4 cut(s)	46, 115, 274, 340
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	6 cut(s)	31, 105, 124, 282, 324, 397
Bsp68I	TCGCGA	1 cut(s)	323
BspACI	CCGC	1 cut(s)	152
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	74
BspFNI	CGCG	1 cut(s)	323
BspHI	TCATGA	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	279
BspPI	GGATC	2 cut(s)	100, 132
BssMI	GATC	6 cut(s)	31, 105, 124, 282, 324, 397
BssNI	GRCGYC	2 cut(s)	24, 288
BssSI	CACGAG	2 cut(s)	91, 199
Bst2BI	CACGAG	2 cut(s)	91, 199
Bst2UI	CCWGG	2 cut(s)	122, 251
Bst6I	CTCTTC	1 cut(s)	207
BstACI	GRCGYC	2 cut(s)	24, 288
BstC8I	GCNNGC	1 cut(s)	191
BstDEI	CTNAG	2 cut(s)	61, 269
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstF5I	GGATG	1 cut(s)	294
BstFNI	CGCG	1 cut(s)	323
BstKTI	GATC	6 cut(s)	34, 108, 127, 285, 327, 400
BstMBI	GATC	6 cut(s)	31, 105, 124, 282, 324, 397
BstMCI	CGRYCG	2 cut(s)	285, 327
BstMWI	GCNNNNNNNGC	1 cut(s)	165
BstNI	CCWGG	2 cut(s)	122, 251
BstSCI	CCNGG	4 cut(s)	120, 249, 274, 340
BstUI	CGCG	1 cut(s)	323
BstV2I	GAAGAC	1 cut(s)	336
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	294
BtsI	GCAGTG	1 cut(s)	391
BtsIMutI	CAGTG	1 cut(s)	391
BtuMI	TCGCGA	1 cut(s)	323
Cac8I	GCNNGC	1 cut(s)	191
CciI	TCATGA	1 cut(s)	231
Cfr13I	GGNCC	3 cut(s)	118, 247, 278
CseI	GACGC	1 cut(s)	346
CsiI	ACCWGGT	1 cut(s)	249
Csp6I	GTAC	1 cut(s)	375
CviAII	CATG	3 cut(s)	181, 223, 232
CviJI	RGCY	5 cut(s)	5, 159, 189, 347, 368
CviKI_1	RGCY	5 cut(s)	5, 159, 189, 347, 368
CviQI	GTAC	1 cut(s)	375
DdeI	CTNAG	2 cut(s)	61, 269
DpnI	GATC	6 cut(s)	33, 107, 126, 284, 326, 399
DpnII	GATC	6 cut(s)	31, 105, 124, 282, 324, 397
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco47I	GGWCC	3 cut(s)	118, 247, 278
EcoNI	CCTNNNNNAGG	1 cut(s)	113
EcoO109I	RGGNCCY	1 cut(s)	118
EcoRII	CCWGG	2 cut(s)	120, 249
FaeI	CATG	3 cut(s)	184, 226, 235
FaiI	YATR	4 cut(s)	170, 182, 224, 233
FatI	CATG	3 cut(s)	180, 222, 231
FblI	GTMKAC	2 cut(s)	27, 255
FokI	GGATG	1 cut(s)	281
FspBI	CTAG	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	165, 275, 341
HgaI	GACGC	1 cut(s)	346
Hin1I	GRCGYC	2 cut(s)	24, 288
Hin1II	CATG	3 cut(s)	184, 226, 235
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	3 cut(s)	59, 219, 311
HpaII	CCGG	3 cut(s)	165, 275, 341
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	3 cut(s)	28, 256, 292
Hpy188I	TCNGA	4 cut(s)	64, 282, 316, 362
Hpy188III	TCNNGA	3 cut(s)	35, 232, 322
Hpy8I	GTNNAC	3 cut(s)	28, 256, 292
Hpy99I	CGWCG	3 cut(s)	26, 290, 362
HpyAV	CCTTC	1 cut(s)	238
HpyCH4IV	ACGT	2 cut(s)	24, 288
HpyF10VI	GCNNNNNNNGC	1 cut(s)	165
HpyF3I	CTNAG	2 cut(s)	61, 269
HpySE526I	ACGT	2 cut(s)	24, 288
Hsp92I	GRCGYC	2 cut(s)	24, 288
Hsp92II	CATG	3 cut(s)	184, 226, 235
Kzo9I	GATC	6 cut(s)	31, 105, 124, 282, 324, 397
LmnI	GCTCC	1 cut(s)	344
LpnPI	CCDG	8 cut(s)	107, 134, 178, 236, 263, 272, 288, 354
LweI	GCATC	1 cut(s)	63
MabI	ACCWGGT	1 cut(s)	249
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	2 cut(s)	24, 288
MalI	GATC	6 cut(s)	33, 107, 126, 284, 326, 399
MboI	GATC	6 cut(s)	31, 105, 124, 282, 324, 397
MboII	GAAGA	6 cut(s)	82, 124, 224, 341, 404, 407
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	7, 262
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	53, 228, 320
MmeI	TCCRAC	2 cut(s)	294, 340
MnlI	CCTC	4 cut(s)	23, 50, 109, 119
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	51
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	3 cut(s)	165, 275, 341
MspR9I	CCNGG	4 cut(s)	122, 251, 276, 342
MvaI	CCWGG	2 cut(s)	122, 251
MvnI	CGCG	1 cut(s)	323
MwoI	GCNNNNNNNGC	1 cut(s)	165
NciI	CCSGG	2 cut(s)	276, 342
NdeII	GATC	6 cut(s)	31, 105, 124, 282, 324, 397
NlaIII	CATG	3 cut(s)	184, 226, 235
NlaIV	GGNNCC	1 cut(s)	279
NmeAIII	GCCGAG	1 cut(s)	163
NruI	TCGCGA	1 cut(s)	323
PagI	TCATGA	1 cut(s)	231
PcsI	WCGNNNNNNNCGW	2 cut(s)	27, 320
PflFI	GACNNNGTC	2 cut(s)	251, 276
Ple19I	CGATCG	2 cut(s)	285, 327
PleI	GAGTC	3 cut(s)	53, 227, 319
PpsI	GAGTC	3 cut(s)	53, 227, 319
PpuMI	RGGWCCY	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	118
Psp6I	CCWGG	2 cut(s)	120, 249
PspGI	CCWGG	2 cut(s)	120, 249
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	3 cut(s)	118, 247, 278
PspPPI	RGGWCCY	1 cut(s)	118
PsyI	GACNNNGTC	2 cut(s)	251, 276
PvuI	CGATCG	2 cut(s)	285, 327
RruI	TCGCGA	1 cut(s)	323
RsaI	GTAC	1 cut(s)	376
RsaNI	GTAC	1 cut(s)	375
SalI	GTCGAC	1 cut(s)	254
SaqAI	TTAA	1 cut(s)	51
Sau3AI	GATC	6 cut(s)	31, 105, 124, 282, 324, 397
Sau96I	GGNCC	3 cut(s)	118, 247, 278
SchI	GAGTC	3 cut(s)	53, 228, 320
ScrFI	CCNGG	4 cut(s)	122, 251, 276, 342
SetI	ASST	9 cut(s)	27, 42, 123, 161, 255, 261, 291, 336, 349
SexAI	ACCWGGT	1 cut(s)	249
SfaNI	GCATC	1 cut(s)	63
SinI	GGWCC	3 cut(s)	118, 247, 278
Sse9I	AATT	2 cut(s)	7, 262
SsiI	CCGC	1 cut(s)	152
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	4 cut(s)	120, 249, 274, 340
TaiI	ACGT	2 cut(s)	27, 291
TaqI	TCGA	7 cut(s)	36, 114, 173, 255, 285, 327, 400
TasI	AATT	2 cut(s)	7, 262
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	1 cut(s)	391
TspDTI	ATGAA	3 cut(s)	169, 220, 251
TspGWI	ACGGA	1 cut(s)	362
TspRI	CASTG	1 cut(s)	391
Tth111I	GACNNNGTC	2 cut(s)	251, 276
VpaK11BI	GGWCC	3 cut(s)	118, 247, 278
XagI	CCTNNNNNAGG	1 cut(s)	113
XapI	RAATTY	1 cut(s)	262
XmiI	GTMKAC	2 cut(s)	27, 255
XspI	CTAG	1 cut(s)	45
ZraI	GACGTC	2 cut(s)	25, 289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.