Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001360

Physical Location & Seq

Genomic Coordinates Forward (+)

1266092 .. 1271432

Gene Structure 5341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00278180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1572 bp

ATGGTCCGGTTCATGGGTGTCGTCTACTTCCTCCTCTTCCTCATACCTCTGTTCTATGTTCTCAGGTTCTTGTCCAGAACATCTCTACTTCACATGGTCGTGAAATCATGGCAATCCTTAATCGACAGGTTTCATGTTTACCAGTTCTACAAGGTCCCCCAGTTCAACCACAACTTCCAAGAGAACCAGCTCTACAGGAAAATCTCTGTCTACCTTAACTCCCTCCCCAACATTGAAGACTCCGACTTCACCAACCTTTTCTCCGGTTCCAAATCCAACGACATATTCTTCCAACACGACAACAACCACTCCGTACACGACACCTTCCTCAGCGCCAAGGTTTCCTGGACCAACGAGAAATCCGATGTCGACGGAATCAGGTCCTACGTTTTGAGAATCAAGAAAACCGACAAGAAACGTGTTTTCCGGCAGTACTTCCAGCACATACTGACCGTGTCCGACGAAATTGAACAACGGAATAAAGACATCAAGCTGTACATGAATCTCGCAACGGAAAACGAACGGTGGAGATCGGTTCCCTTCACCCACCCGGCAACCTTAGACACGGTCGTCATGGACATGGAGCTCAAGAACAAGGTCCGGTCTGATCTCGAACAATTCTTAAAGTCCAAGCAATACTACCACAGACTCGGTCGTGTCTGGAAACGAAGCTTCTTACTCTACGGTCCTTCCGGGACCGGAAAAACCAACTTCATCGCCGCCATGGCCAGGTTCCTGTCGTACGACGTATACGACATCGACATGTCCAAAGTCTCCGATGATTCCGATCTGAAAATGCTCCTCTTACAAACCTCGCCCAAGTCGTTAATTGTCGTGGAAGATCTCGACCGTTTCTTGTCGGAGAAATCAACGGCTGTGAGCCTCTCGGGATTGCTGAACTTCATGGACGGAATCGTCTCCAGCTGCGGCGAGGAGAGAGTGTTGGTGTTCACGATGAACGGAAAAGAACACGTGGACAAGTTGGTCATGCGGCCGGGTCGGGTCGACGTCCATATCCATTTCCCGCTCTGTGATTTTTCGGCTTTCAAAAGCTTGGCCAACACGTACTTAGGGGTGAAAGAGCACAAGCTGTTTCCTCAGGTGGAGGAGATTTTCCAGAGCGGCGGGAGTTTAAGTCCGGCGGAGATCGGAGAGATCATGATATCGAATCGGAGCTCGCCGAGTCGGGCGTTGAAGTCGGTTATATCGGCGCTGCAGACGGACGTGGATAACAAGACGACGGTGAAGGTGGCGCAGGCGTTGACGAGTAGCGGGTCGGGTCGGTCGGTGGACGAGTCGGGTGAGCCCGGGACGGTGTTTTGTAGGGAGAGTGTTCACACGGTGAGGGAGTTCAGGAAGTTGTATGGGCTTTTGAGATTGGGGAGTAGGAGAAAGGAGGAGCCGCCGGTGGTGCCGTTGGATAGGAGTTCGTCGGAAAAAGAAGGATCACGGCATGAAAGGATGATCGTCTTTAAGAAGATTATGAGAAAAAACAAGCAAAGATGCAAGTATACAACCTTCTACCGATTCAAACTTGGGGACAAATACGATGAGATGCTAAAGAACGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

523

Amino Acids

60.61

Weight (kDa)

9.4

Isoelectric Point (pI)

45.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	28 - 118	3e-10	Domain associated at C-terminal with AAA
AAA	PF00004	226 - 343	2.1e-14	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	344 - 409	6.5e-13	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46620
fragaria_vesca	FvH4_7g17220 FvH4_7g32500
malus_domestica	MD01G1085900.v1.1 MD01G1225700.v1.1 MD02G1229200.v1.1 MD07G1155000.v1.1 MD07G1296200.v1.1
prunus_persica	Prupe.2G193700_v2.0.a1 Prupe.2G315800_v2.0.a1
pyrus_communis	pycom01g23420 pycom07g15210 pycom07g26900
rosa_chinensis	RchiOBHm_Chr1g0360611 RchiOBHm_Chr1g0382341 RchiOBHm_Chr2g0086831 RchiOBHm_Chr2g0139501 RchiOBHm_Chr3g0458211 RchiOBHm_Chr3g0478421 RchiOBHm_Chr4g0427361
rosa_laevigata	RLG00000002572 RLG00000009827 RLG00000026185 RLG00000027795 RLG00000030781
rosa_multiflora	Rmu_sc0000110.1_g000040 Rmu_sc0001436.1_g000033 Rmu_sc0002188.1_g000003 Rmu_sc0002535.1_g000007 Rmu_sc0003020.1_g000016 Rmu_sc0003481.1_g000013 Rmu_sc0004697.1_g000002 Rmu_sc0007558.1_g000001 Rmu_sc0010192.1_g000001 Rmu_sc0015587.1_g000001 Rmu_sc0042341.1_g000002
rosa_roxburghii	Rroxscaffold_2G00093530 Rroxscaffold_4G00278180
rosa_rugosa	Rorug01G0280000 Rorug01G0433500 Rorug02G0149500 Rorug05G0571400
rosa_samantha	Rh1AG292200 Rh1BG257100 Rh1BG414500 Rh1CG274900 Rh1DG287000 Rh1DG446600 Rh5BG487600 Rh5CG511800
rosa_wichuraiana	Rw1G025870 Rw1G041280 Rw5G043520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	569, 914, 983
AatII	GACGTC	1 cut(s)	1011
AccB1I	GGYRCC	1 cut(s)	1411
AccBSI	CCGCTC	2 cut(s)	1027, 1122
AccI	GTMKAC	6 cut(s)	24, 210, 369, 750, 1005, 1511
AciI	CCGC	9 cut(s)	720, 927, 991, 1025, 1122, 1125, 1142, 1272, 1403
AclI	AACGTT	1 cut(s)	1566
AclWI	GGATC	1 cut(s)	1453
AcoI	YGGCCR	3 cut(s)	726, 992, 1056
AcvI	CACGTG	1 cut(s)	973
AcyI	GRCGYC	1 cut(s)	1008
AdeI	CACNNNGTG	1 cut(s)	1342
AfaI	GTAC	5 cut(s)	315, 434, 497, 743, 1067
AfiI	CCNNNNNNNGG	2 cut(s)	13, 729
AflIII	ACRYGT	4 cut(s)	418, 762, 970, 1062
AgsI	TTSAA	6 cut(s)	166, 236, 470, 1048, 1195, 1531
AjiI	CACGTC	1 cut(s)	1225
AjnI	CCWGG	2 cut(s)	344, 728
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AluBI	AGCT	8 cut(s)	190, 493, 586, 672, 924, 1053, 1090, 1176
AluI	AGCT	8 cut(s)	190, 493, 586, 672, 924, 1053, 1090, 1176
Alw21I	GWGCWC	3 cut(s)	588, 1086, 1178
Alw26I	GTCTC	2 cut(s)	778, 922
AlwI	GGATC	1 cut(s)	1453
Ama87I	CYCGRG	2 cut(s)	886, 1307
AoxI	GGCC	3 cut(s)	726, 992, 1056
ApeKI	GCWGC	2 cut(s)	924, 1213
AspLEI	GCGC	3 cut(s)	335, 1213, 1255
AspS9I	GGNCC	7 cut(s)	4, 154, 348, 381, 598, 686, 696
AsuC2I	CCSGG	5 cut(s)	551, 694, 996, 1308, 1309
AsuHPI	GGTGA	6 cut(s)	241, 535, 1087, 1255, 1313, 1354
AvaI	CYCGRG	2 cut(s)	886, 1307
AvaII	GGWCC	7 cut(s)	4, 154, 348, 381, 598, 686, 696
AxyI	CCTNAGG	1 cut(s)	1098
BalI	TGGCCA	2 cut(s)	728, 1058
BanI	GGYRCC	1 cut(s)	1411
BanII	GRGCYC	3 cut(s)	588, 1178, 1308
BarI	GAAGNNNNNNTAC	2 cut(s)	1502, 1534
BbrPI	CACGTG	1 cut(s)	973
BbsI	GAAGAC	1 cut(s)	243
Bbv12I	GWGCWC	3 cut(s)	588, 1086, 1178
BbvCI	CCTCAGC	1 cut(s)	329
BbvI	GCAGC	2 cut(s)	911, 1200
BceAI	ACGGC	3 cut(s)	888, 1399, 1466
BciT130I	CCWGG	2 cut(s)	346, 730
BcnI	CCSGG	5 cut(s)	551, 694, 996, 1308, 1309
BcoDI	GTCTC	2 cut(s)	778, 922
BfmI	CTRYAG	2 cut(s)	193, 1214
BfoI	RGCGCY	2 cut(s)	336, 1214
BglI	GCCNNNNNGGC	1 cut(s)	725
BglII	AGATCT	1 cut(s)	841
BisI	GCNGC	7 cut(s)	720, 925, 928, 992, 1123, 1214, 1403
BlsI	GCNGC	7 cut(s)	721, 926, 929, 993, 1124, 1215, 1404
BmcAI	AGTACT	1 cut(s)	434
Bme1390I	CCNGG	7 cut(s)	346, 551, 694, 730, 996, 1308, 1309
Bme18I	GGWCC	7 cut(s)	4, 154, 348, 381, 598, 686, 696
BmeT110I	CYCGRG	2 cut(s)	886, 1307
BmgBI	CACGTC	1 cut(s)	1225
BmgT120I	GGNCC	7 cut(s)	4, 154, 348, 381, 598, 686, 696
BmiI	GGNNCC	7 cut(s)	156, 268, 537, 697, 734, 1401, 1413
BmrFI	CCNGG	7 cut(s)	346, 551, 694, 730, 996, 1308, 1309
BmrI	ACTGGG	1 cut(s)	154
BmsI	GCATC	2 cut(s)	1493, 1545
BmuI	ACTGGG	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	243
BpmI	CTGGAG	1 cut(s)	904
Bpu10I	CCTNAGC	1 cut(s)	329
BpuEI	CTTGAG	1 cut(s)	572
BpuMI	CCSGG	5 cut(s)	551, 694, 996, 1308, 1309
BsaAI	YACGTR	2 cut(s)	973, 1065
BsaBI	GATNNNNATC	1 cut(s)	786
BsaHI	GRCGYC	1 cut(s)	1008
BsaJI	CCNNGG	3 cut(s)	336, 723, 1307
BsaWI	WCCGGW	4 cut(s)	6, 263, 600, 698
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 729
Bse118I	RCCGGY	1 cut(s)	1405
Bse1I	ACTGG	2 cut(s)	142, 160
Bse21I	CCTNAGG	1 cut(s)	1098
Bse8I	GATNNNNATC	1 cut(s)	786
BseBI	CCWGG	2 cut(s)	346, 730
BseDI	CCNNGG	3 cut(s)	336, 723, 1307
BseGI	GGATG	1 cut(s)	1467
BseJI	GATNNNNATC	1 cut(s)	786
BseLI	CCNNNNNNNGG	2 cut(s)	13, 729
BseMII	CTCAG	3 cut(s)	76, 343, 1112
BseNI	ACTGG	2 cut(s)	142, 160
BseRI	GAGGAG	5 cut(s)	23, 791, 947, 1121, 1412
BseX3I	CGGCCG	1 cut(s)	992
BseXI	GCAGC	2 cut(s)	911, 1200
Bsh1285I	CGRYCG	5 cut(s)	570, 655, 850, 995, 1286
BshFI	GGCC	3 cut(s)	728, 994, 1058
BshNI	GGYRCC	1 cut(s)	1411
BsiEI	CGRYCG	5 cut(s)	570, 655, 850, 995, 1286
BsiHKAI	GWGCWC	3 cut(s)	588, 1086, 1178
BsiHKCI	CYCGRG	2 cut(s)	886, 1307
BsiWI	CGTACG	1 cut(s)	741
BslFI	GGGAC	4 cut(s)	140, 709, 1324, 1553
BslI	CCNNNNNNNGG	2 cut(s)	13, 729
BsmAI	GTCTC	2 cut(s)	778, 922
BsmBI	CGTCTC	1 cut(s)	922
BsmFI	GGGAC	4 cut(s)	140, 709, 1324, 1553
BsnI	GGCC	3 cut(s)	728, 994, 1058
BsoBI	CYCGRG	2 cut(s)	886, 1307
Bsp1286I	GDGCHC	4 cut(s)	588, 1086, 1178, 1308
Bsp1407I	TGTACA	1 cut(s)	495
Bsp143I	GATC	8 cut(s)	530, 607, 787, 841, 1146, 1155, 1445, 1464
Bsp19I	CCATGG	1 cut(s)	723
BspACI	CCGC	9 cut(s)	720, 927, 991, 1025, 1122, 1125, 1142, 1272, 1403
BspANI	GGCC	3 cut(s)	728, 994, 1058
BspCNI	CTCAG	3 cut(s)	75, 342, 1111
BspHI	TCATGA	1 cut(s)	1158
BspLI	GGNNCC	7 cut(s)	156, 268, 537, 697, 734, 1401, 1413
BspMAI	CTGCAG	1 cut(s)	1218
BspPI	GGATC	1 cut(s)	1453
BspT107I	GGYRCC	1 cut(s)	1411
BsrBI	CCGCTC	2 cut(s)	1027, 1122
BsrFI	RCCGGY	1 cut(s)	1405
BsrGI	TGTACA	1 cut(s)	495
BsrI	ACTGG	2 cut(s)	142, 160
BssAI	RCCGGY	1 cut(s)	1405
BssECI	CCNNGG	3 cut(s)	336, 723, 1307
BssMI	GATC	8 cut(s)	530, 607, 787, 841, 1146, 1155, 1445, 1464
BssNAI	GTATAC	2 cut(s)	751, 1512
BssNI	GRCGYC	1 cut(s)	1008
BssT1I	CCWWGG	2 cut(s)	336, 723
Bst1107I	GTATAC	2 cut(s)	751, 1512
Bst2UI	CCWGG	2 cut(s)	346, 730
Bst4CI	ACNGT	8 cut(s)	454, 525, 568, 686, 851, 1243, 1315, 1342
Bst6I	CTCTTC	1 cut(s)	41
BstACI	GRCGYC	1 cut(s)	1008
BstAUI	TGTACA	1 cut(s)	495
BstBAI	YACGTR	2 cut(s)	973, 1065
BstC8I	GCNNGC	2 cut(s)	1178, 1257
BstDEI	CTNAG	5 cut(s)	62, 329, 559, 1069, 1098
BstDSI	CCRYGG	1 cut(s)	723
BstF5I	GGATG	1 cut(s)	1467
BstH2I	RGCGCY	2 cut(s)	336, 1214
BstHHI	GCGC	3 cut(s)	335, 1213, 1255
BstKTI	GATC	8 cut(s)	533, 610, 790, 844, 1149, 1158, 1448, 1467
BstMAI	GTCTC	2 cut(s)	778, 922
BstMBI	GATC	8 cut(s)	530, 607, 787, 841, 1146, 1155, 1445, 1464
BstMCI	CGRYCG	5 cut(s)	570, 655, 850, 995, 1286
BstMWI	GCNNNNNNNGC	2 cut(s)	725, 1411
BstNI	CCWGG	2 cut(s)	346, 730
BstNSI	RCATGY	1 cut(s)	766
BstSCI	CCNGG	7 cut(s)	344, 549, 692, 728, 994, 1306, 1307
BstSFI	CTRYAG	2 cut(s)	193, 1214
BstV1I	GCAGC	2 cut(s)	911, 1200
BstV2I	GAAGAC	1 cut(s)	243
BstX2I	RGATCY	1 cut(s)	841
BstYI	RGATCY	1 cut(s)	841
BstZ17I	GTATAC	2 cut(s)	751, 1512
BstZI	CGGCCG	1 cut(s)	992
Bsu36I	CCTNAGG	1 cut(s)	1098
BsuRI	GGCC	3 cut(s)	728, 994, 1058
BtgI	CCRYGG	1 cut(s)	723
BtgZI	GCGATG	1 cut(s)	700
BtrI	CACGTC	1 cut(s)	1225
BtsCI	GGATG	1 cut(s)	1467
Cac8I	GCNNGC	2 cut(s)	1178, 1257
CciI	TCATGA	1 cut(s)	1158
CfoI	GCGC	3 cut(s)	335, 1213, 1255
Cfr10I	RCCGGY	1 cut(s)	1405
Cfr13I	GGNCC	7 cut(s)	4, 154, 348, 381, 598, 686, 696
Cfr9I	CCCGGG	1 cut(s)	1307
Csp6I	GTAC	5 cut(s)	314, 433, 496, 742, 1066
CviQI	GTAC	5 cut(s)	314, 433, 496, 742, 1066
DdeI	CTNAG	5 cut(s)	62, 329, 559, 1069, 1098
DpnI	GATC	8 cut(s)	532, 609, 789, 843, 1148, 1157, 1447, 1466
DpnII	GATC	8 cut(s)	530, 607, 787, 841, 1146, 1155, 1445, 1464
DraIII	CACNNNGTG	1 cut(s)	1342
DrdI	GACNNNNNNGTC	3 cut(s)	569, 914, 983
DseDI	GACNNNNNNGTC	3 cut(s)	569, 914, 983
EaeI	YGGCCR	3 cut(s)	726, 992, 1056
EagI	CGGCCG	1 cut(s)	992
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
EciI	GGCGGA	1 cut(s)	1157
Ecl136II	GAGCTC	2 cut(s)	586, 1176
EclXI	CGGCCG	1 cut(s)	992
Eco130I	CCWWGG	2 cut(s)	336, 723
Eco24I	GRGCYC	3 cut(s)	588, 1178, 1308
Eco32I	GATATC	1 cut(s)	1164
Eco47I	GGWCC	7 cut(s)	4, 154, 348, 381, 598, 686, 696
Eco52I	CGGCCG	1 cut(s)	992
Eco53kI	GAGCTC	2 cut(s)	586, 1176
Eco72I	CACGTG	1 cut(s)	973
Eco81I	CCTNAGG	1 cut(s)	1098
Eco88I	CYCGRG	2 cut(s)	886, 1307
EcoICRI	GAGCTC	2 cut(s)	586, 1176
EcoO109I	RGGNCCY	2 cut(s)	154, 381
EcoRII	CCWGG	2 cut(s)	344, 728
EcoRV	GATATC	1 cut(s)	1164
EcoT14I	CCWWGG	2 cut(s)	336, 723
EcoT38I	GRGCYC	3 cut(s)	588, 1178, 1308
ErhI	CCWWGG	2 cut(s)	336, 723
Esp3I	CGTCTC	1 cut(s)	922
FaqI	GGGAC	4 cut(s)	140, 709, 1324, 1553
FauI	CCCGC	3 cut(s)	1032, 1118, 1265
FblI	GTMKAC	6 cut(s)	24, 210, 369, 750, 1005, 1511
Fnu4HI	GCNGC	7 cut(s)	720, 925, 928, 992, 1123, 1214, 1403
FokI	GGATG	1 cut(s)	1474
FriOI	GRGCYC	3 cut(s)	588, 1178, 1308
Fsp4HI	GCNGC	7 cut(s)	720, 925, 928, 992, 1123, 1214, 1403
GlaI	GCGC	3 cut(s)	334, 1212, 1254
GluI	GCNGC	7 cut(s)	720, 925, 928, 992, 1123, 1214, 1403
GsuI	CTGGAG	1 cut(s)	904
HaeII	RGCGCY	2 cut(s)	336, 1214
HaeIII	GGCC	3 cut(s)	728, 994, 1058
HhaI	GCGC	3 cut(s)	335, 1213, 1255
Hin1I	GRCGYC	1 cut(s)	1008
Hin6I	GCGC	3 cut(s)	333, 1211, 1253
HinP1I	GCGC	3 cut(s)	333, 1211, 1253
HincII	GTYRAC	3 cut(s)	370, 1006, 1263
HindII	GTYRAC	3 cut(s)	370, 1006, 1263
HindIII	AAGCTT	2 cut(s)	670, 1051
HphI	GGTGA	6 cut(s)	241, 535, 1087, 1255, 1313, 1354
Hpy99I	CGWCG	6 cut(s)	374, 464, 749, 1010, 1243, 1435
HpyAV	CCTTC	6 cut(s)	334, 550, 699, 1240, 1436, 1528
HpyCH4III	ACNGT	8 cut(s)	454, 525, 568, 686, 851, 1243, 1315, 1342
HpyCH4IV	ACGT	8 cut(s)	387, 418, 747, 972, 1008, 1064, 1224, 1566
HpyCH4V	TGCA	2 cut(s)	1216, 1506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	725, 1411
HpyF3I	CTNAG	5 cut(s)	62, 329, 559, 1069, 1098
HpySE526I	ACGT	8 cut(s)	387, 418, 747, 972, 1008, 1064, 1224, 1566
Hsp92I	GRCGYC	1 cut(s)	1008
HspAI	GCGC	3 cut(s)	333, 1211, 1253
Kzo9I	GATC	8 cut(s)	530, 607, 787, 841, 1146, 1155, 1445, 1464
LmnI	GCTCC	4 cut(s)	583, 804, 1173, 1399
Lsp1109I	GCAGC	2 cut(s)	911, 1200
LweI	GCATC	2 cut(s)	1493, 1545
MaeII	ACGT	8 cut(s)	387, 418, 747, 972, 1008, 1064, 1224, 1566
MalI	GATC	8 cut(s)	532, 609, 789, 843, 1148, 1157, 1447, 1466
MbiI	CCGCTC	2 cut(s)	1027, 1122
MboI	GATC	8 cut(s)	530, 607, 787, 841, 1146, 1155, 1445, 1464
MboII	GAAGA	5 cut(s)	28, 248, 280, 851, 1489
MflI	RGATCY	1 cut(s)	841
MhlI	GDGCHC	4 cut(s)	588, 1086, 1178, 1308
MlsI	TGGCCA	2 cut(s)	728, 1058
MluCI	AATT	3 cut(s)	465, 617, 828
MluNI	TGGCCA	2 cut(s)	728, 1058
MlyI	GAGTC	4 cut(s)	233, 642, 1192, 1304
MmeI	TCCRAC	7 cut(s)	267, 300, 316, 483, 840, 1398, 1413
Mox20I	TGGCCA	2 cut(s)	728, 1058
MscI	TGGCCA	2 cut(s)	728, 1058
MseI	TTAA	7 cut(s)	119, 216, 623, 827, 1133, 1473, 1570
MslI	CAYNNNNRTG	3 cut(s)	98, 578, 761
Msp20I	TGGCCA	2 cut(s)	728, 1058
MspA1I	CMGCKG	1 cut(s)	924
MspR9I	CCNGG	7 cut(s)	346, 551, 694, 730, 996, 1308, 1309
MvaI	CCWGG	2 cut(s)	346, 730
MwoI	GCNNNNNNNGC	2 cut(s)	725, 1411
NciI	CCSGG	5 cut(s)	551, 694, 996, 1308, 1309
NcoI	CCATGG	1 cut(s)	723
NdeII	GATC	8 cut(s)	530, 607, 787, 841, 1146, 1155, 1445, 1464
NlaIV	GGNNCC	7 cut(s)	156, 268, 537, 697, 734, 1401, 1413
NmeAIII	GCCGAG	1 cut(s)	1206
NspI	RCATGY	1 cut(s)	766
PagI	TCATGA	1 cut(s)	1158
PciI	ACATGT	1 cut(s)	762
PcsI	WCGNNNNNNNCGW	3 cut(s)	360, 750, 821
PfeI	GAWTC	7 cut(s)	375, 396, 502, 782, 912, 1168, 1527
Pfl23II	CGTACG	1 cut(s)	741
PflFI	GACNNNGTC	3 cut(s)	454, 566, 651
PfoI	TCCNGGA	2 cut(s)	344, 692
PkrI	GCNGC	7 cut(s)	721, 926, 929, 993, 1124, 1215, 1404
PleI	GAGTC	4 cut(s)	233, 642, 1191, 1303
PmaCI	CACGTG	1 cut(s)	973
PmlI	CACGTG	1 cut(s)	973
PpsI	GAGTC	4 cut(s)	233, 642, 1191, 1303
Ppu21I	YACGTR	2 cut(s)	973, 1065
PpuMI	RGGWCCY	2 cut(s)	154, 381
PscI	ACATGT	1 cut(s)	762
Psp124BI	GAGCTC	2 cut(s)	588, 1178
Psp1406I	AACGTT	1 cut(s)	1566
Psp5II	RGGWCCY	2 cut(s)	154, 381
Psp6I	CCWGG	2 cut(s)	344, 728
PspCI	CACGTG	1 cut(s)	973
PspGI	CCWGG	2 cut(s)	344, 728
PspLI	CGTACG	1 cut(s)	741
PspN4I	GGNNCC	7 cut(s)	156, 268, 537, 697, 734, 1401, 1413
PspPI	GGNCC	7 cut(s)	4, 154, 348, 381, 598, 686, 696
PspPPI	RGGWCCY	2 cut(s)	154, 381
PsrI	GAACNNNNNNTAC	2 cut(s)	176, 208
PstI	CTGCAG	1 cut(s)	1218
PsuI	RGATCY	1 cut(s)	841
PsyI	GACNNNGTC	3 cut(s)	454, 566, 651
PvuII	CAGCTG	1 cut(s)	924
RsaI	GTAC	5 cut(s)	315, 434, 497, 743, 1067
RsaNI	GTAC	5 cut(s)	314, 433, 496, 742, 1066
RseI	CAYNNNNRTG	3 cut(s)	98, 578, 761
SacI	GAGCTC	2 cut(s)	588, 1178
SalI	GTCGAC	2 cut(s)	368, 1004
SaqAI	TTAA	7 cut(s)	119, 216, 623, 827, 1133, 1473, 1570
SatI	GCNGC	7 cut(s)	720, 925, 928, 992, 1123, 1214, 1403
Sau3AI	GATC	8 cut(s)	530, 607, 787, 841, 1146, 1155, 1445, 1464
Sau96I	GGNCC	7 cut(s)	4, 154, 348, 381, 598, 686, 696
ScaI	AGTACT	1 cut(s)	434
SchI	GAGTC	4 cut(s)	233, 642, 1192, 1304
ScrFI	CCNGG	7 cut(s)	346, 551, 694, 730, 996, 1308, 1309
SduI	GDGCHC	4 cut(s)	588, 1086, 1178, 1308
SfaNI	GCATC	2 cut(s)	1493, 1545
SfcI	CTRYAG	2 cut(s)	193, 1214
SgrAI	CRCCGGYG	1 cut(s)	1405
SinI	GGWCC	7 cut(s)	4, 154, 348, 381, 598, 686, 696
SmaI	CCCGGG	1 cut(s)	1309
SmiMI	CAYNNNNRTG	3 cut(s)	98, 578, 761
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
Sse9I	AATT	3 cut(s)	465, 617, 828
SsiI	CCGC	9 cut(s)	720, 927, 991, 1025, 1122, 1125, 1142, 1272, 1403
SstI	GAGCTC	2 cut(s)	588, 1178
StyD4I	CCNGG	7 cut(s)	344, 549, 692, 728, 994, 1306, 1307
StyI	CCWWGG	2 cut(s)	336, 723
TaaI	ACNGT	8 cut(s)	454, 525, 568, 686, 851, 1243, 1315, 1342
TaiI	ACGT	8 cut(s)	390, 421, 750, 975, 1011, 1067, 1227, 1569
TaqI	TCGA	7 cut(s)	123, 369, 612, 759, 846, 1005, 1166
TaqII	GACCGA	2 cut(s)	641, 1272
TasI	AATT	3 cut(s)	465, 617, 828
TatI	WGTACW	2 cut(s)	432, 495
TauI	GCSGC	5 cut(s)	722, 930, 994, 1125, 1405
TfiI	GAWTC	7 cut(s)	375, 396, 502, 782, 912, 1168, 1527
Tru1I	TTAA	7 cut(s)	119, 216, 623, 827, 1133, 1473, 1570
Tru9I	TTAA	7 cut(s)	119, 216, 623, 827, 1133, 1473, 1570
TseI	GCWGC	2 cut(s)	924, 1213
TspDTI	ATGAA	6 cut(s)	122, 515, 703, 892, 971, 1470
TspGWI	ACGGA	7 cut(s)	301, 387, 490, 527, 924, 975, 1235
TspMI	CCCGGG	1 cut(s)	1307
Tth111I	GACNNNGTC	3 cut(s)	454, 566, 651
VpaK11BI	GGWCC	7 cut(s)	4, 154, 348, 381, 598, 686, 696
XceI	RCATGY	1 cut(s)	766
XmaI	CCCGGG	1 cut(s)	1307
XmiI	GTMKAC	6 cut(s)	24, 210, 369, 750, 1005, 1511
ZraI	GACGTC	1 cut(s)	1009
ZrmI	AGTACT	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.