Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001360

Physical Location & Seq

Genomic Coordinates Forward (+)

1820336 .. 1820803

Gene Structure 468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46233

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAACGTCGACGACGACTTCCGCAACGCGCGGTGGAGGACCGTGCAGTTCACGCACCCATCTACGCTGGAGACGATTGCCATGGAAGCCGATCTCAAATCAAAGATCAAGTCCGATTTGGAGTCGTTTCTCAAAGCCAAGCAGTACTACAACCCACTCGGCCGCGTCTGGAAGAGAAGCTTCTTGCTTTACTGCCCCTCCGGCACTGGGAAATCCAGCTTTATCGCCACCATGGCCAATTTTCTCGGCTACGACGTCTATGATCTCGACCTCTCTAGGGTTAAAGACGACTCGGAGTTGAAGATGCTTCTTTTACAGACCACGAGCAAGTCGGTGATCCTCATCGAGGACCTGGATCAGTTCTTCCCCGAGAAATCGACGGCGGTCAGCTTCTTCGGCATATTGAACTTCATGGACGGCTTGCTCAACTCGTGCTACGCGCCGAAGAGAGAGTCATGGTGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

155

Amino Acids

17.82

Weight (kDa)

5.84

Isoelectric Point (pI)

44.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	62 - 143	3.6e-08	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46620
fragaria_vesca	FvH4_7g17220 FvH4_7g32500
malus_domestica	MD01G1085900.v1.1 MD01G1225700.v1.1 MD02G1229200.v1.1 MD07G1155000.v1.1 MD07G1296200.v1.1
prunus_persica	Prupe.2G193700_v2.0.a1 Prupe.2G315800_v2.0.a1
pyrus_communis	pycom01g23420 pycom07g15210 pycom07g26900
rosa_chinensis	RchiOBHm_Chr1g0360611 RchiOBHm_Chr1g0382341 RchiOBHm_Chr2g0086831 RchiOBHm_Chr2g0139501 RchiOBHm_Chr3g0458211 RchiOBHm_Chr3g0478421 RchiOBHm_Chr4g0427361
rosa_laevigata	RLG00000002572 RLG00000009827 RLG00000026185 RLG00000027795 RLG00000030781
rosa_multiflora	Rmu_sc0000110.1_g000040 Rmu_sc0001436.1_g000033 Rmu_sc0002188.1_g000003 Rmu_sc0002535.1_g000007 Rmu_sc0003020.1_g000016 Rmu_sc0003481.1_g000013 Rmu_sc0004697.1_g000002 Rmu_sc0007558.1_g000001 Rmu_sc0010192.1_g000001 Rmu_sc0015587.1_g000001 Rmu_sc0042341.1_g000002
rosa_roxburghii	Rroxscaffold_2G00093530 Rroxscaffold_4G00278180
rosa_rugosa	Rorug01G0280000 Rorug01G0433500 Rorug02G0149500 Rorug05G0571400
rosa_samantha	Rh1AG292200 Rh1BG257100 Rh1BG414500 Rh1CG274900 Rh1DG287000 Rh1DG446600 Rh5BG487600 Rh5CG511800
rosa_wichuraiana	Rw1G025870 Rw1G041280 Rw5G043520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	258
AccI	GTMKAC	1 cut(s)	9
AccII	CGCG	4 cut(s)	29, 31, 165, 440
AciI	CCGC	4 cut(s)	22, 31, 163, 383
AclWI	GGATC	2 cut(s)	331, 363
AcoI	YGGCCR	2 cut(s)	160, 234
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	3 cut(s)	207, 277, 346
AgsI	TTSAA	2 cut(s)	301, 406
AjnI	CCWGG	1 cut(s)	351
AluBI	AGCT	3 cut(s)	180, 219, 390
AluI	AGCT	3 cut(s)	180, 219, 390
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	2 cut(s)	331, 363
Ama87I	CYCGRG	1 cut(s)	368
AoxI	GGCC	2 cut(s)	160, 234
ArsI	GACNNNNNNTTYG	3 cut(s)	95, 127, 437
AspLEI	GCGC	2 cut(s)	31, 442
AspS9I	GGNCC	2 cut(s)	39, 349
AsuHPI	GGTGA	1 cut(s)	346
AvaI	CYCGRG	1 cut(s)	368
AvaII	GGWCC	2 cut(s)	39, 349
BalI	TGGCCA	1 cut(s)	236
BauI	CACGAG	2 cut(s)	322, 430
BccI	CCATC	1 cut(s)	67
BceAI	ACGGC	2 cut(s)	396, 433
BciT130I	CCWGG	1 cut(s)	353
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	1 cut(s)	276
BglI	GCCNNNNNGGC	2 cut(s)	201, 233
BisI	GCNGC	1 cut(s)	163
BlsI	GCNGC	1 cut(s)	164
BmcAI	AGTACT	1 cut(s)	146
Bme1390I	CCNGG	1 cut(s)	353
Bme18I	GGWCC	2 cut(s)	39, 349
BmeT110I	CYCGRG	1 cut(s)	368
BmgT120I	GGNCC	2 cut(s)	39, 349
BmrFI	CCNGG	1 cut(s)	353
BmrI	ACTGGG	1 cut(s)	216
BmsI	GCATC	1 cut(s)	294
BmuI	ACTGGG	1 cut(s)	216
BoxI	GACNNNNGTC	1 cut(s)	383
BpmI	CTGGAG	1 cut(s)	89
BsaBI	GATNNNNATC	1 cut(s)	341
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	2 cut(s)	81, 231
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	3 cut(s)	207, 277, 346
Bse1I	ACTGG	1 cut(s)	211
Bse8I	GATNNNNATC	1 cut(s)	341
BseBI	CCWGG	1 cut(s)	353
BseDI	CCNNGG	2 cut(s)	81, 231
BseJI	GATNNNNATC	1 cut(s)	341
BseLI	CCNNNNNNNGG	3 cut(s)	207, 277, 346
BseNI	ACTGG	1 cut(s)	211
BseX3I	CGGCCG	1 cut(s)	160
BsgI	GTGCAG	1 cut(s)	65
Bsh1236I	CGCG	4 cut(s)	29, 31, 165, 440
Bsh1285I	CGRYCG	1 cut(s)	163
BshFI	GGCC	2 cut(s)	162, 236
BsiEI	CGRYCG	1 cut(s)	163
BsiHKCI	CYCGRG	1 cut(s)	368
BsiSI	CCGG	1 cut(s)	201
BslI	CCNNNNNNNGG	3 cut(s)	207, 277, 346
BsmAI	GTCTC	1 cut(s)	65
BsmBI	CGTCTC	1 cut(s)	65
BsnI	GGCC	2 cut(s)	162, 236
BsoBI	CYCGRG	1 cut(s)	368
Bsp143I	GATC	5 cut(s)	91, 105, 262, 336, 355
Bsp19I	CCATGG	2 cut(s)	81, 231
BspACI	CCGC	4 cut(s)	22, 31, 163, 383
BspANI	GGCC	2 cut(s)	162, 236
BspFNI	CGCG	4 cut(s)	29, 31, 165, 440
BspHI	TCATGA	1 cut(s)	464
BspPI	GGATC	2 cut(s)	331, 363
BsrI	ACTGG	1 cut(s)	211
BssECI	CCNNGG	2 cut(s)	81, 231
BssMI	GATC	5 cut(s)	91, 105, 262, 336, 355
BssNI	GRCGYC	1 cut(s)	255
BssSI	CACGAG	2 cut(s)	322, 430
BssT1I	CCWWGG	2 cut(s)	81, 231
Bst2BI	CACGAG	2 cut(s)	322, 430
Bst2UI	CCWGG	1 cut(s)	353
Bst4CI	ACNGT	1 cut(s)	43
Bst6I	CTCTTC	2 cut(s)	167, 440
BstACI	GRCGYC	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	422
BstDSI	CCRYGG	2 cut(s)	81, 231
BstENI	CCTNNNNNAGG	1 cut(s)	344
BstFNI	CGCG	4 cut(s)	29, 31, 165, 440
BstHHI	GCGC	2 cut(s)	31, 442
BstKTI	GATC	5 cut(s)	94, 108, 265, 339, 358
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	5 cut(s)	91, 105, 262, 336, 355
BstMCI	CGRYCG	1 cut(s)	163
BstMWI	GCNNNNNNNGC	5 cut(s)	52, 86, 201, 233, 396
BstNI	CCWGG	1 cut(s)	353
BstPAI	GACNNNNGTC	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	351
BstUI	CGCG	4 cut(s)	29, 31, 165, 440
BstZI	CGGCCG	1 cut(s)	160
BsuRI	GGCC	2 cut(s)	162, 236
BtgI	CCRYGG	2 cut(s)	81, 231
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	422
CciI	TCATGA	1 cut(s)	464
CfoI	GCGC	2 cut(s)	31, 442
Cfr13I	GGNCC	2 cut(s)	39, 349
CseI	GACGC	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	5 cut(s)	82, 232, 412, 456, 465
CviJI	RGCY	9 cut(s)	89, 137, 162, 180, 219, 236, 249, 390, 420
CviKI_1	RGCY	9 cut(s)	89, 137, 162, 180, 219, 236, 249, 390, 420
CviQI	GTAC	1 cut(s)	145
DpnI	GATC	5 cut(s)	93, 107, 264, 338, 357
DpnII	GATC	5 cut(s)	91, 105, 262, 336, 355
EaeI	YGGCCR	2 cut(s)	160, 234
EagI	CGGCCG	1 cut(s)	160
Eam1104I	CTCTTC	2 cut(s)	167, 440
EarI	CTCTTC	2 cut(s)	167, 440
EclXI	CGGCCG	1 cut(s)	160
Eco130I	CCWWGG	2 cut(s)	81, 231
Eco47I	GGWCC	2 cut(s)	39, 349
Eco52I	CGGCCG	1 cut(s)	160
Eco88I	CYCGRG	1 cut(s)	368
EcoNI	CCTNNNNNAGG	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	349
EcoRII	CCWGG	1 cut(s)	351
EcoT14I	CCWWGG	2 cut(s)	81, 231
ErhI	CCWWGG	2 cut(s)	81, 231
Esp3I	CGTCTC	1 cut(s)	65
FaeI	CATG	5 cut(s)	85, 235, 415, 459, 468
FaiI	YATR	7 cut(s)	83, 233, 261, 401, 413, 457, 466
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FatI	CATG	5 cut(s)	81, 231, 411, 455, 464
FblI	GTMKAC	1 cut(s)	9
Fnu4HI	GCNGC	1 cut(s)	163
Fsp4HI	GCNGC	1 cut(s)	163
FspBI	CTAG	1 cut(s)	276
GlaI	GCGC	2 cut(s)	30, 441
GluI	GCNGC	1 cut(s)	163
GsuI	CTGGAG	1 cut(s)	89
HaeIII	GGCC	2 cut(s)	162, 236
HapII	CCGG	1 cut(s)	201
HgaI	GACGC	1 cut(s)	154
HhaI	GCGC	2 cut(s)	31, 442
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	5 cut(s)	85, 235, 415, 459, 468
Hin6I	GCGC	2 cut(s)	29, 440
HinP1I	GCGC	2 cut(s)	29, 440
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HindIII	AAGCTT	1 cut(s)	178
HinfI	GANTC	3 cut(s)	122, 290, 452
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	2 cut(s)	10, 51
Hpy188I	TCNGA	2 cut(s)	115, 295
Hpy188III	TCNNGA	3 cut(s)	169, 266, 465
Hpy8I	GTNNAC	2 cut(s)	10, 51
Hpy99I	CGWCG	5 cut(s)	11, 14, 17, 257, 382
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	2 cut(s)	6, 255
HpyCH4V	TGCA	1 cut(s)	46
HpyF10VI	GCNNNNNNNGC	5 cut(s)	52, 86, 201, 233, 396
HpySE526I	ACGT	2 cut(s)	6, 255
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	5 cut(s)	85, 235, 415, 459, 468
HspAI	GCGC	2 cut(s)	29, 440
Kzo9I	GATC	5 cut(s)	91, 105, 262, 336, 355
LpnPI	CCDG	7 cut(s)	53, 154, 192, 214, 229, 338, 365
LweI	GCATC	1 cut(s)	294
MaeI	CTAG	1 cut(s)	276
MaeII	ACGT	2 cut(s)	6, 255
MalI	GATC	5 cut(s)	93, 107, 264, 338, 357
MboI	GATC	5 cut(s)	91, 105, 262, 336, 355
MboII	GAAGA	5 cut(s)	184, 313, 355, 385, 457
MlsI	TGGCCA	1 cut(s)	236
MluCI	AATT	1 cut(s)	238
MluNI	TGGCCA	1 cut(s)	236
MlyI	GAGTC	3 cut(s)	131, 284, 461
MnlI	CCTC	5 cut(s)	30, 208, 281, 340, 350
Mox20I	TGGCCA	1 cut(s)	236
MscI	TGGCCA	1 cut(s)	236
MseI	TTAA	1 cut(s)	282
Msp20I	TGGCCA	1 cut(s)	236
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	1 cut(s)	353
MvaI	CCWGG	1 cut(s)	353
MvnI	CGCG	4 cut(s)	29, 31, 165, 440
MwoI	GCNNNNNNNGC	5 cut(s)	52, 86, 201, 233, 396
NcoI	CCATGG	2 cut(s)	81, 231
NdeII	GATC	5 cut(s)	91, 105, 262, 336, 355
NlaIII	CATG	5 cut(s)	85, 235, 415, 459, 468
NmeAIII	GCCGAG	2 cut(s)	138, 225
PagI	TCATGA	1 cut(s)	464
PcsI	WCGNNNNNNNCGW	3 cut(s)	12, 71, 252
PkrI	GCNGC	1 cut(s)	164
PleI	GAGTC	3 cut(s)	130, 284, 460
PpsI	GAGTC	3 cut(s)	130, 284, 460
PpuMI	RGGWCCY	1 cut(s)	349
PshAI	GACNNNNGTC	1 cut(s)	383
Psp5II	RGGWCCY	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	351
PspGI	CCWGG	1 cut(s)	351
PspPI	GGNCC	2 cut(s)	39, 349
PspPPI	RGGWCCY	1 cut(s)	349
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SalI	GTCGAC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	1 cut(s)	163
Sau3AI	GATC	5 cut(s)	91, 105, 262, 336, 355
Sau96I	GGNCC	2 cut(s)	39, 349
ScaI	AGTACT	1 cut(s)	146
SchI	GAGTC	3 cut(s)	131, 284, 461
ScrFI	CCNGG	1 cut(s)	353
SetI	ASST	7 cut(s)	9, 182, 221, 258, 273, 354, 392
SfaNI	GCATC	1 cut(s)	294
SgrDI	CGTCGACG	1 cut(s)	8
SinI	GGWCC	2 cut(s)	39, 349
Sse9I	AATT	1 cut(s)	238
SsiI	CCGC	4 cut(s)	22, 31, 163, 383
SspMI	CTAG	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	351
StyI	CCWWGG	2 cut(s)	81, 231
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	2 cut(s)	9, 258
TaqI	TCGA	4 cut(s)	9, 267, 345, 377
TasI	AATT	1 cut(s)	238
TatI	WGTACW	1 cut(s)	144
TauI	GCSGC	1 cut(s)	165
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	1 cut(s)	211
TspDTI	ATGAA	3 cut(s)	17, 400, 453
TspRI	CASTG	1 cut(s)	211
VpaK11BI	GGWCC	2 cut(s)	39, 349
XagI	CCTNNNNNAGG	1 cut(s)	344
XmiI	GTMKAC	1 cut(s)	9
XspI	CTAG	1 cut(s)	276
ZraI	GACGTC	1 cut(s)	256
ZrmI	AGTACT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.