Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001360

Physical Location & Seq

Genomic Coordinates Reverse (-)

6970945 .. 6971298

Gene Structure 354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAACATCGACGACTCCGCCACGGCCGACGACGACTTCCGCAACGCGCGGTGGAGGACCGTGCCGTTCACGCACCCATCTACGCCGGAGATGATTGCCATGGAAGCCGATCTCAAATCGAAGATCAAGTCCGATTTGGAGTCGTTTCTCAAAGCCAAGCAGTACTACAACCGACTCGGCCGCGTCTGGAAGCGAAGCTTCTTGCTGTACGGCCCCTCCGGCATTGGGAAATCCAGCTTTATCGCCACCACCCCCAATTTTCTCGGCTACGATGTCTACTATCTCGACCTCTCTAGGGTTAAAGACAACTCGGAGTTGAAGATGCTTCTTTACAGACCACGAGCAAGTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

117

Amino Acids

13.57

Weight (kDa)

9.52

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46620
fragaria_vesca	FvH4_7g17220 FvH4_7g32500
malus_domestica	MD01G1085900.v1.1 MD01G1225700.v1.1 MD02G1229200.v1.1 MD07G1155000.v1.1 MD07G1296200.v1.1
prunus_persica	Prupe.2G193700_v2.0.a1 Prupe.2G315800_v2.0.a1
pyrus_communis	pycom01g23420 pycom07g15210 pycom07g26900
rosa_chinensis	RchiOBHm_Chr1g0360611 RchiOBHm_Chr1g0382341 RchiOBHm_Chr2g0086831 RchiOBHm_Chr2g0139501 RchiOBHm_Chr3g0458211 RchiOBHm_Chr3g0478421 RchiOBHm_Chr4g0427361
rosa_laevigata	RLG00000002572 RLG00000009827 RLG00000026185 RLG00000027795 RLG00000030781
rosa_multiflora	Rmu_sc0000110.1_g000040 Rmu_sc0001436.1_g000033 Rmu_sc0002188.1_g000003 Rmu_sc0002535.1_g000007 Rmu_sc0003020.1_g000016 Rmu_sc0003481.1_g000013 Rmu_sc0004697.1_g000002 Rmu_sc0007558.1_g000001 Rmu_sc0010192.1_g000001 Rmu_sc0015587.1_g000001 Rmu_sc0042341.1_g000002
rosa_roxburghii	Rroxscaffold_2G00093530 Rroxscaffold_4G00278180
rosa_rugosa	Rorug01G0280000 Rorug01G0433500 Rorug02G0149500 Rorug05G0571400
rosa_samantha	Rh1AG292200 Rh1BG257100 Rh1BG414500 Rh1CG274900 Rh1DG287000 Rh1DG446600 Rh5BG487600 Rh5CG511800
rosa_wichuraiana	Rw1G025870 Rw1G041280 Rw5G043520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	276
AccII	CGCG	3 cut(s)	47, 49, 183
AciI	CCGC	4 cut(s)	18, 40, 49, 181
AcoI	YGGCCR	2 cut(s)	24, 178
AfaI	GTAC	2 cut(s)	164, 209
AfiI	CCNNNNNNNGG	2 cut(s)	225, 295
AgsI	TTSAA	1 cut(s)	319
AluBI	AGCT	2 cut(s)	198, 237
AluI	AGCT	2 cut(s)	198, 237
AoxI	GGCC	3 cut(s)	24, 178, 211
ArsI	GACNNNNNNTTYG	2 cut(s)	113, 145
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	2 cut(s)	57, 212
AvaII	GGWCC	1 cut(s)	57
BauI	CACGAG	1 cut(s)	339
BccI	CCATC	1 cut(s)	85
BceAI	ACGGC	3 cut(s)	39, 49, 226
BfaI	CTAG	1 cut(s)	294
BglI	GCCNNNNNGGC	1 cut(s)	219
BisI	GCNGC	1 cut(s)	181
BlsI	GCNGC	1 cut(s)	182
BmcAI	AGTACT	1 cut(s)	164
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	2 cut(s)	57, 212
BmiI	GGNNCC	1 cut(s)	214
BmsI	GCATC	1 cut(s)	312
BsaJI	CCNNGG	2 cut(s)	21, 99
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	2 cut(s)	225, 295
BseDI	CCNNGG	2 cut(s)	21, 99
BseLI	CCNNNNNNNGG	2 cut(s)	225, 295
BseX3I	CGGCCG	2 cut(s)	24, 178
Bsh1236I	CGCG	3 cut(s)	47, 49, 183
Bsh1285I	CGRYCG	2 cut(s)	27, 181
BshFI	GGCC	3 cut(s)	26, 180, 213
BsiEI	CGRYCG	2 cut(s)	27, 181
BsiSI	CCGG	2 cut(s)	86, 219
BslI	CCNNNNNNNGG	2 cut(s)	225, 295
BsnI	GGCC	3 cut(s)	26, 180, 213
Bsp143I	GATC	2 cut(s)	109, 123
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	4 cut(s)	18, 40, 49, 181
BspANI	GGCC	3 cut(s)	26, 180, 213
BspFNI	CGCG	3 cut(s)	47, 49, 183
BspLI	GGNNCC	1 cut(s)	214
BssECI	CCNNGG	2 cut(s)	21, 99
BssMI	GATC	2 cut(s)	109, 123
BssSI	CACGAG	1 cut(s)	339
BssT1I	CCWWGG	1 cut(s)	99
Bst2BI	CACGAG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	61
BstDSI	CCRYGG	2 cut(s)	21, 99
BstFNI	CGCG	3 cut(s)	47, 49, 183
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	2 cut(s)	112, 126
BstMBI	GATC	2 cut(s)	109, 123
BstMCI	CGRYCG	2 cut(s)	27, 181
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 104, 219
BstUI	CGCG	3 cut(s)	47, 49, 183
BstZI	CGGCCG	2 cut(s)	24, 178
BsuRI	GGCC	3 cut(s)	26, 180, 213
BtgI	CCRYGG	2 cut(s)	21, 99
CfoI	GCGC	1 cut(s)	49
Cfr13I	GGNCC	2 cut(s)	57, 212
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	163, 208
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	8 cut(s)	26, 107, 155, 180, 198, 213, 237, 267
CviKI_1	RGCY	8 cut(s)	26, 107, 155, 180, 198, 213, 237, 267
CviQI	GTAC	2 cut(s)	163, 208
DpnI	GATC	2 cut(s)	111, 125
DpnII	GATC	2 cut(s)	109, 123
EaeI	YGGCCR	2 cut(s)	24, 178
EagI	CGGCCG	2 cut(s)	24, 178
EciI	GGCGGA	1 cut(s)	7
EclXI	CGGCCG	2 cut(s)	24, 178
Eco130I	CCWWGG	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	57
Eco52I	CGGCCG	2 cut(s)	24, 178
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	1 cut(s)	103
FaiI	YATR	1 cut(s)	101
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FatI	CATG	1 cut(s)	99
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	1 cut(s)	181
Fsp4HI	GCNGC	1 cut(s)	181
FspBI	CTAG	1 cut(s)	294
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	181
HaeIII	GGCC	3 cut(s)	26, 180, 213
HapII	CCGG	2 cut(s)	86, 219
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	1 cut(s)	103
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HindIII	AAGCTT	1 cut(s)	196
HinfI	GANTC	3 cut(s)	14, 140, 174
HpaII	CCGG	2 cut(s)	86, 219
Hpy166II	GTNNAC	2 cut(s)	69, 277
Hpy188I	TCNGA	2 cut(s)	133, 313
Hpy188III	TCNNGA	2 cut(s)	187, 284
Hpy8I	GTNNAC	2 cut(s)	69, 277
Hpy99I	CGWCG	3 cut(s)	14, 32, 35
HpyCH4III	ACNGT	1 cut(s)	61
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 104, 219
Hsp92II	CATG	1 cut(s)	103
HspAI	GCGC	1 cut(s)	47
Kzo9I	GATC	2 cut(s)	109, 123
LpnPI	CCDG	4 cut(s)	99, 172, 232, 247
LweI	GCATC	1 cut(s)	312
MaeI	CTAG	1 cut(s)	294
MalI	GATC	2 cut(s)	111, 125
MboI	GATC	2 cut(s)	109, 123
MboII	GAAGA	2 cut(s)	133, 331
MluCI	AATT	1 cut(s)	256
MlyI	GAGTC	3 cut(s)	8, 149, 168
MnlI	CCTC	3 cut(s)	48, 226, 299
MseI	TTAA	1 cut(s)	300
MspI	CCGG	2 cut(s)	86, 219
MvnI	CGCG	3 cut(s)	47, 49, 183
MwoI	GCNNNNNNNGC	3 cut(s)	70, 104, 219
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	2 cut(s)	109, 123
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	1 cut(s)	214
NmeAIII	GCCGAG	2 cut(s)	156, 243
PkrI	GCNGC	1 cut(s)	182
PleI	GAGTC	3 cut(s)	8, 148, 168
PpsI	GAGTC	3 cut(s)	8, 148, 168
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	2 cut(s)	57, 212
RsaI	GTAC	2 cut(s)	164, 209
RsaNI	GTAC	2 cut(s)	163, 208
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	1 cut(s)	181
Sau3AI	GATC	2 cut(s)	109, 123
Sau96I	GGNCC	2 cut(s)	57, 212
ScaI	AGTACT	1 cut(s)	164
SchI	GAGTC	3 cut(s)	8, 149, 168
SetI	ASST	3 cut(s)	200, 239, 291
SfaNI	GCATC	1 cut(s)	312
SinI	GGWCC	1 cut(s)	57
Sse9I	AATT	1 cut(s)	256
SsiI	CCGC	4 cut(s)	18, 40, 49, 181
SspMI	CTAG	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	61
TaqI	TCGA	3 cut(s)	9, 119, 285
TasI	AATT	1 cut(s)	256
TatI	WGTACW	1 cut(s)	162
TauI	GCSGC	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	57
XmiI	GTMKAC	1 cut(s)	276
XspI	CTAG	1 cut(s)	294
ZrmI	AGTACT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.