Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001360

Physical Location & Seq

Genomic Coordinates Forward (+)

52638943 .. 52639428

Gene Structure 486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39629

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAACGTAGATGACTCCGCCACGGCCGACGACGACTTCCGCAACGCGCGGTGGAGGACCGCGCCGTTCACGCACCCATCTACGCTGGAGACGATTGCCATGGAAGCTGATCTCAAATCGAAGATCAAGTCCGATTTGGAGTCGTTTCTCAAAGCCAAGCAGTACTACAACCGACTCGGCCGCTTATGGAACCGAAGCTTCTTGCTTTACGGCCCCTCCGGCACTGGGAAATCCAGCTTTATCGCCACCATGGCCAATTTCCTCGGCTACGACGTCTACGATCTCGACCTCTCTAGGGTTAAAGACGATTCGGAGTTGAAGATGCTTCTTTTACAGACCACGAGCAAGTCGGTGATCCTCATCGAGGACCTGGATCGGTTCTTCGCCGAGAAATCGACGGCGGTCAGCTTCTCCGGCATATCCAACTTCATGGACGGCTTGCTCAACTCGTGCTACGCGCCGAAGAGAGAGTCATGGTGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

161

Amino Acids

18.25

Weight (kDa)

5.44

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	68 - 148	1.8e-09	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46620
fragaria_vesca	FvH4_7g17220 FvH4_7g32500
malus_domestica	MD01G1085900.v1.1 MD01G1225700.v1.1 MD02G1229200.v1.1 MD07G1155000.v1.1 MD07G1296200.v1.1
prunus_persica	Prupe.2G193700_v2.0.a1 Prupe.2G315800_v2.0.a1
pyrus_communis	pycom01g23420 pycom07g15210 pycom07g26900
rosa_chinensis	RchiOBHm_Chr1g0360611 RchiOBHm_Chr1g0382341 RchiOBHm_Chr2g0086831 RchiOBHm_Chr2g0139501 RchiOBHm_Chr3g0458211 RchiOBHm_Chr3g0478421 RchiOBHm_Chr4g0427361
rosa_laevigata	RLG00000002572 RLG00000009827 RLG00000026185 RLG00000027795 RLG00000030781
rosa_multiflora	Rmu_sc0000110.1_g000040 Rmu_sc0001436.1_g000033 Rmu_sc0002188.1_g000003 Rmu_sc0002535.1_g000007 Rmu_sc0003020.1_g000016 Rmu_sc0003481.1_g000013 Rmu_sc0004697.1_g000002 Rmu_sc0007558.1_g000001 Rmu_sc0010192.1_g000001 Rmu_sc0015587.1_g000001 Rmu_sc0042341.1_g000002
rosa_roxburghii	Rroxscaffold_2G00093530 Rroxscaffold_4G00278180
rosa_rugosa	Rorug01G0280000 Rorug01G0433500 Rorug02G0149500 Rorug05G0571400
rosa_samantha	Rh1AG292200 Rh1BG257100 Rh1BG414500 Rh1CG274900 Rh1DG287000 Rh1DG446600 Rh5BG487600 Rh5CG511800
rosa_wichuraiana	Rw1G025870 Rw1G041280 Rw5G043520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	276
AccI	GTMKAC	1 cut(s)	276
AccII	CGCG	4 cut(s)	47, 49, 62, 458
AciI	CCGC	6 cut(s)	18, 40, 49, 60, 181, 401
AclWI	GGATC	2 cut(s)	349, 381
AcoI	YGGCCR	3 cut(s)	24, 178, 252
AcyI	GRCGYC	1 cut(s)	273
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	3 cut(s)	225, 295, 364
AgsI	TTSAA	1 cut(s)	319
AjnI	CCWGG	1 cut(s)	369
AluBI	AGCT	4 cut(s)	107, 198, 237, 408
AluI	AGCT	4 cut(s)	107, 198, 237, 408
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	2 cut(s)	349, 381
AoxI	GGCC	4 cut(s)	24, 178, 211, 252
ArsI	GACNNNNNNTTYG	3 cut(s)	113, 145, 455
AspLEI	GCGC	3 cut(s)	49, 64, 460
AspS9I	GGNCC	3 cut(s)	57, 212, 367
AsuHPI	GGTGA	1 cut(s)	364
AvaII	GGWCC	2 cut(s)	57, 367
BalI	TGGCCA	1 cut(s)	254
BauI	CACGAG	2 cut(s)	340, 448
BccI	CCATC	1 cut(s)	85
BceAI	ACGGC	5 cut(s)	39, 49, 226, 414, 451
BciT130I	CCWGG	1 cut(s)	371
BcoDI	GTCTC	1 cut(s)	83
BfaI	CTAG	1 cut(s)	294
BglI	GCCNNNNNGGC	2 cut(s)	219, 251
BisI	GCNGC	1 cut(s)	181
BlsI	GCNGC	1 cut(s)	182
BmcAI	AGTACT	1 cut(s)	164
Bme1390I	CCNGG	1 cut(s)	371
Bme18I	GGWCC	2 cut(s)	57, 367
BmgT120I	GGNCC	3 cut(s)	57, 212, 367
BmiI	GGNNCC	2 cut(s)	191, 214
BmrFI	CCNGG	1 cut(s)	371
BmrI	ACTGGG	1 cut(s)	234
BmsI	GCATC	1 cut(s)	312
BmuI	ACTGGG	1 cut(s)	234
BoxI	GACNNNNGTC	1 cut(s)	401
BpmI	CTGGAG	1 cut(s)	107
BsaBI	GATNNNNATC	1 cut(s)	359
BsaHI	GRCGYC	1 cut(s)	273
BsaJI	CCNNGG	4 cut(s)	21, 99, 249, 262
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	3 cut(s)	225, 295, 364
Bse1I	ACTGG	1 cut(s)	229
Bse8I	GATNNNNATC	1 cut(s)	359
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	4 cut(s)	21, 99, 249, 262
BseJI	GATNNNNATC	1 cut(s)	359
BseLI	CCNNNNNNNGG	3 cut(s)	225, 295, 364
BseNI	ACTGG	1 cut(s)	229
BseX3I	CGGCCG	2 cut(s)	24, 178
Bsh1236I	CGCG	4 cut(s)	47, 49, 62, 458
Bsh1285I	CGRYCG	2 cut(s)	27, 181
BshFI	GGCC	4 cut(s)	26, 180, 213, 254
BsiEI	CGRYCG	2 cut(s)	27, 181
BsiSI	CCGG	2 cut(s)	219, 414
BslI	CCNNNNNNNGG	3 cut(s)	225, 295, 364
BsmAI	GTCTC	1 cut(s)	83
BsmBI	CGTCTC	1 cut(s)	83
BsnI	GGCC	4 cut(s)	26, 180, 213, 254
Bsp143I	GATC	5 cut(s)	109, 123, 280, 354, 373
Bsp19I	CCATGG	2 cut(s)	99, 249
BspACI	CCGC	6 cut(s)	18, 40, 49, 60, 181, 401
BspANI	GGCC	4 cut(s)	26, 180, 213, 254
BspFNI	CGCG	4 cut(s)	47, 49, 62, 458
BspHI	TCATGA	1 cut(s)	482
BspLI	GGNNCC	2 cut(s)	191, 214
BspPI	GGATC	2 cut(s)	349, 381
BsrI	ACTGG	1 cut(s)	229
BssECI	CCNNGG	4 cut(s)	21, 99, 249, 262
BssMI	GATC	5 cut(s)	109, 123, 280, 354, 373
BssNI	GRCGYC	1 cut(s)	273
BssSI	CACGAG	2 cut(s)	340, 448
BssT1I	CCWWGG	2 cut(s)	99, 249
Bst2BI	CACGAG	2 cut(s)	340, 448
Bst2UI	CCWGG	1 cut(s)	371
Bst6I	CTCTTC	1 cut(s)	458
BstACI	GRCGYC	1 cut(s)	273
BstC8I	GCNNGC	1 cut(s)	440
BstDSI	CCRYGG	3 cut(s)	21, 99, 249
BstENI	CCTNNNNNAGG	1 cut(s)	362
BstFNI	CGCG	4 cut(s)	47, 49, 62, 458
BstHHI	GCGC	3 cut(s)	49, 64, 460
BstKTI	GATC	5 cut(s)	112, 126, 283, 357, 376
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	5 cut(s)	109, 123, 280, 354, 373
BstMCI	CGRYCG	2 cut(s)	27, 181
BstMWI	GCNNNNNNNGC	5 cut(s)	70, 104, 219, 251, 414
BstNI	CCWGG	1 cut(s)	371
BstPAI	GACNNNNGTC	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	369
BstUI	CGCG	4 cut(s)	47, 49, 62, 458
BstXI	CCANNNNNNTGG	1 cut(s)	430
BstZI	CGGCCG	2 cut(s)	24, 178
BsuRI	GGCC	4 cut(s)	26, 180, 213, 254
BtgI	CCRYGG	3 cut(s)	21, 99, 249
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	440
CciI	TCATGA	1 cut(s)	482
CfoI	GCGC	3 cut(s)	49, 64, 460
Cfr13I	GGNCC	3 cut(s)	57, 212, 367
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	5 cut(s)	100, 250, 430, 474, 483
CviQI	GTAC	1 cut(s)	163
DpnI	GATC	5 cut(s)	111, 125, 282, 356, 375
DpnII	GATC	5 cut(s)	109, 123, 280, 354, 373
EaeI	YGGCCR	3 cut(s)	24, 178, 252
EagI	CGGCCG	2 cut(s)	24, 178
Eam1104I	CTCTTC	1 cut(s)	458
EarI	CTCTTC	1 cut(s)	458
EciI	GGCGGA	1 cut(s)	7
EclXI	CGGCCG	2 cut(s)	24, 178
Eco130I	CCWWGG	2 cut(s)	99, 249
Eco47I	GGWCC	2 cut(s)	57, 367
Eco52I	CGGCCG	2 cut(s)	24, 178
EcoNI	CCTNNNNNAGG	1 cut(s)	362
EcoO109I	RGGNCCY	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	369
EcoT14I	CCWWGG	2 cut(s)	99, 249
ErhI	CCWWGG	2 cut(s)	99, 249
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	5 cut(s)	103, 253, 433, 477, 486
FaiI	YATR	7 cut(s)	101, 187, 251, 419, 431, 475, 484
FatI	CATG	5 cut(s)	99, 249, 429, 473, 482
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	1 cut(s)	181
Fsp4HI	GCNGC	1 cut(s)	181
FspBI	CTAG	1 cut(s)	294
GlaI	GCGC	3 cut(s)	48, 63, 459
GluI	GCNGC	1 cut(s)	181
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	4 cut(s)	26, 180, 213, 254
HapII	CCGG	2 cut(s)	219, 414
HhaI	GCGC	3 cut(s)	49, 64, 460
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	5 cut(s)	103, 253, 433, 477, 486
Hin6I	GCGC	3 cut(s)	47, 62, 458
HinP1I	GCGC	3 cut(s)	47, 62, 458
HindIII	AAGCTT	1 cut(s)	196
HinfI	GANTC	5 cut(s)	14, 140, 174, 308, 470
HpaII	CCGG	2 cut(s)	219, 414
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	2 cut(s)	69, 277
Hpy188I	TCNGA	2 cut(s)	133, 313
Hpy188III	TCNNGA	2 cut(s)	284, 483
Hpy8I	GTNNAC	2 cut(s)	69, 277
Hpy99I	CGWCG	4 cut(s)	32, 35, 275, 400
HpyCH4IV	ACGT	2 cut(s)	6, 273
HpyF10VI	GCNNNNNNNGC	5 cut(s)	70, 104, 219, 251, 414
HpySE526I	ACGT	2 cut(s)	6, 273
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	5 cut(s)	103, 253, 433, 477, 486
HspAI	GCGC	3 cut(s)	47, 62, 458
Kzo9I	GATC	5 cut(s)	109, 123, 280, 354, 373
LpnPI	CCDG	7 cut(s)	71, 210, 232, 247, 356, 383, 427
LweI	GCATC	1 cut(s)	312
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	2 cut(s)	6, 273
MalI	GATC	5 cut(s)	111, 125, 282, 356, 375
MboI	GATC	5 cut(s)	109, 123, 280, 354, 373
MboII	GAAGA	4 cut(s)	133, 331, 373, 475
MlsI	TGGCCA	1 cut(s)	254
MluCI	AATT	1 cut(s)	256
MluNI	TGGCCA	1 cut(s)	254
MlyI	GAGTC	4 cut(s)	8, 149, 168, 479
MmeI	TCCRAC	1 cut(s)	447
MnlI	CCTC	6 cut(s)	48, 226, 272, 299, 358, 368
Mox20I	TGGCCA	1 cut(s)	254
MscI	TGGCCA	1 cut(s)	254
MseI	TTAA	1 cut(s)	300
Msp20I	TGGCCA	1 cut(s)	254
MspI	CCGG	2 cut(s)	219, 414
MspR9I	CCNGG	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	371
MvnI	CGCG	4 cut(s)	47, 49, 62, 458
MwoI	GCNNNNNNNGC	5 cut(s)	70, 104, 219, 251, 414
NcoI	CCATGG	2 cut(s)	99, 249
NdeII	GATC	5 cut(s)	109, 123, 280, 354, 373
NlaIII	CATG	5 cut(s)	103, 253, 433, 477, 486
NlaIV	GGNNCC	2 cut(s)	191, 214
NmeAIII	GCCGAG	3 cut(s)	156, 243, 412
PagI	TCATGA	1 cut(s)	482
PcsI	WCGNNNNNNNCGW	3 cut(s)	89, 270, 276
PfeI	GAWTC	1 cut(s)	308
PkrI	GCNGC	1 cut(s)	182
PleI	GAGTC	4 cut(s)	8, 148, 168, 478
PpsI	GAGTC	4 cut(s)	8, 148, 168, 478
PpuMI	RGGWCCY	1 cut(s)	367
PshAI	GACNNNNGTC	1 cut(s)	401
Psp5II	RGGWCCY	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	2 cut(s)	191, 214
PspPI	GGNCC	3 cut(s)	57, 212, 367
PspPPI	RGGWCCY	1 cut(s)	367
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	1 cut(s)	181
Sau3AI	GATC	5 cut(s)	109, 123, 280, 354, 373
Sau96I	GGNCC	3 cut(s)	57, 212, 367
ScaI	AGTACT	1 cut(s)	164
SchI	GAGTC	4 cut(s)	8, 149, 168, 479
ScrFI	CCNGG	1 cut(s)	371
SetI	ASST	8 cut(s)	9, 109, 200, 239, 276, 291, 372, 410
SfaNI	GCATC	1 cut(s)	312
SinI	GGWCC	2 cut(s)	57, 367
Sse9I	AATT	1 cut(s)	256
SsiI	CCGC	6 cut(s)	18, 40, 49, 60, 181, 401
SspMI	CTAG	1 cut(s)	294
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	2 cut(s)	99, 249
TaiI	ACGT	2 cut(s)	9, 276
TaqI	TCGA	4 cut(s)	119, 285, 363, 395
TasI	AATT	1 cut(s)	256
TatI	WGTACW	1 cut(s)	162
TauI	GCSGC	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	1 cut(s)	229
TspDTI	ATGAA	3 cut(s)	17, 418, 471
TspRI	CASTG	1 cut(s)	229
VpaK11BI	GGWCC	2 cut(s)	57, 367
XagI	CCTNNNNNAGG	1 cut(s)	362
XmiI	GTMKAC	1 cut(s)	276
XspI	CTAG	1 cut(s)	294
ZraI	GACGTC	1 cut(s)	274
ZrmI	AGTACT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.