Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001360

Physical Location & Seq

Genomic Coordinates Reverse (-)

31637230 .. 31642235

Gene Structure 5006 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1225700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1854 bp

ATGCGGGACGGGACGGGACGGGACGGGACGGGACGGGACGGAACGGGACGAAGCGTTCCGTCCCGCGTTTGGTGCGCTAAAAATGGGTGGAACGAGCTGTTCCACGGGACAGATTTTGAGTGTTTTTGCGTTCCACCTCCCCCCTGGAACGGGTTTGTTCCACGTATGTGGAACACAATGTTTTACCATTTTAAGACAAATATACCCCATGTCTTTTTCAAAAATTACACCTTCGTTCCGTCCCGTCCCGTCCCGTTCCGTCCCGTCCCGTCCCGTCCCGTCTGCGTACCAAACGCACCCTTAGAGTCCCTCTCATGCTTTTACTCTAAATCCAAGGACCACAAATTTTGCGCTAGAAAGCTGCAACAGCTTGATAAGGTGCTAGCTCGGTTTCGGGTTAATTGTTCGTTTATCATGGGCGGATTCATGGCATTTTTCTATTTCTTGCTCTTTGCTGTTTCTTTGGTTCTGGTTCTCCGGTTCATGTCCAAAACATCTCTGGTTCACAAATTAACAAAATTATGGGAATCCTTGGCGGACCGGTTCAGAGTCTACCAGTTTTACAAAATCCCGCAGTTCAACGAGCACTTCCAAGAGAACCAGCTCTACGGCAAAATCTCCGTCTACCTCGACTCCCTCCCTTCCATCGAGGATTCTGACTTCACCAACCTCTTCACCGGCGCCAAATCCAACGACATCGTCTTCCGGCACGACGCAAACAACTCCGCCGTCCACGACACCTTCCTCAGCGCCAAGCTCTCTTGGACTATTCAGAAATCCCAGTCCGACGGAATCCGGTCCTTCGTTTTGAAAATCAACCGGTCCGACAAGCGCCGCGTGTTCCGCCAGTACTTCCAGCACATTCTTACCGTCGCCGATGAAATCGAGCAGCGGAACAGAGATATCAAGCTCTACATGAACCTCTCCCGTGAAAACGAACGGTGGCGATCGGTACCGTTCACGCACCCCGCCACCTTCGACACCGTCGTGATGGACGCCGAGCTGAAGAATAAAGTCCGGTCCGATCTTGAGAATTTCTCGAAATCGAAGCAGTATTATCACCGACTAGGCCGAGTTTGGAAGCGGAGCTTTTTGCTCTACGGCCCCTCCGGCACCGGAAAAACCAGCTTCGTCGCCGCCATGGCGAGGTTCTTGAGCTACGACGTGTACGACGTCGACATGTCCAAGGTCACCGACGACTCCGATTTGAAAATGCTTCTCCTCCAAACGACGCCGAAGTCGCTGATCGTGGTGGAGGATCTGGACCGTTTCTTGACGGAGAAATCCACGGCTGTGAGCTTGTCCGGGCTGTTGAATTTTATGGACGGGATAGTGTCATCGTGCGGTGAGGAGCGCGTCTTGGTTTTCACGATGAACGGTAAGGATCAGGTGGACCAGTTGGTTTTGAGGCCGGGTCGGGTTGATGTCCACATCCATTTTCCACTCTGCGATTTTTTCGCTTTCAAGAGCTTGGCCAGCACTTACCTCGGGCTCAAGGAACACAAGCTGTTCCCGCAGGTGGAGGAGATTTTCCACAGCGGAGCGAGTCTTAGCCCGGCGGAGATAGGCGAGATTATGATTTCGAATCGGAGCTCGCCGAGTCGGGCTTTGAAGTCGGTTATCTCGGCGTTGCAGACGAATGTGGATAGTATGAAGGGAGCGAACAAAGTGGGGCAAACGTTGTCCAATAGTTCGTCGGGTCGGTCCGTCGACGAGTCGGGCGAACCCAGCGCCGTTTTTTGCCGGGAAAGTGTTCACACGGTGAGGGAGTTCAGGAAATTGTACGGTCTTTTGAGAATGGGGAGTCGGAGGAAGGAAGAGCCGCCGCTGGATTCGAGTTCGGTGAATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

618

Amino Acids

70.61

Weight (kDa)

9.35

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	168 - 257	8.8e-08	Domain associated at C-terminal with AAA
AAA	PF00004	365 - 482	1.1e-15	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	483 - 547	1.3e-12	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46620
fragaria_vesca	FvH4_7g17220 FvH4_7g32500
malus_domestica	MD01G1085900.v1.1 MD01G1225700.v1.1 MD02G1229200.v1.1 MD07G1155000.v1.1 MD07G1296200.v1.1
prunus_persica	Prupe.2G193700_v2.0.a1 Prupe.2G315800_v2.0.a1
pyrus_communis	pycom01g23420 pycom07g15210 pycom07g26900
rosa_chinensis	RchiOBHm_Chr1g0360611 RchiOBHm_Chr1g0382341 RchiOBHm_Chr2g0086831 RchiOBHm_Chr2g0139501 RchiOBHm_Chr3g0458211 RchiOBHm_Chr3g0478421 RchiOBHm_Chr4g0427361
rosa_laevigata	RLG00000002572 RLG00000009827 RLG00000026185 RLG00000027795 RLG00000030781
rosa_multiflora	Rmu_sc0000110.1_g000040 Rmu_sc0001436.1_g000033 Rmu_sc0002188.1_g000003 Rmu_sc0002535.1_g000007 Rmu_sc0003020.1_g000016 Rmu_sc0003481.1_g000013 Rmu_sc0004697.1_g000002 Rmu_sc0007558.1_g000001 Rmu_sc0010192.1_g000001 Rmu_sc0015587.1_g000001 Rmu_sc0042341.1_g000002
rosa_roxburghii	Rroxscaffold_2G00093530 Rroxscaffold_4G00278180
rosa_rugosa	Rorug01G0280000 Rorug01G0433500 Rorug02G0149500 Rorug05G0571400
rosa_samantha	Rh1AG292200 Rh1BG257100 Rh1BG414500 Rh1CG274900 Rh1DG287000 Rh1DG446600 Rh5BG487600 Rh5CG511800
rosa_wichuraiana	Rw1G025870 Rw1G041280 Rw5G043520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1507
AasI	GACNNNNNNGTC	1 cut(s)	1237
AatII	GACGTC	1 cut(s)	1176
Acc36I	ACCTGC	1 cut(s)	1507
Acc65I	GGTACC	1 cut(s)	952
AccB1I	GGYRCC	3 cut(s)	680, 952, 1112
AccI	GTMKAC	4 cut(s)	552, 624, 1176, 1710
AccII	CGCG	3 cut(s)	66, 837, 1356
AclI	AACGTT	1 cut(s)	1679
AclWI	GGATC	2 cut(s)	1266, 1392
AcoI	YGGCCR	1 cut(s)	1473
AcsI	RAATTY	4 cut(s)	344, 1033, 1315, 1846
AcuI	CTGAAG	1 cut(s)	1025
AcyI	GRCGYC	4 cut(s)	681, 996, 1173, 1232
AdeI	CACNNNGTG	1 cut(s)	1762
AfaI	GTAC	5 cut(s)	288, 851, 954, 1169, 1784
AfiI	CCNNNNNNNGG	5 cut(s)	69, 149, 150, 1146, 1519
AflIII	ACRYGT	2 cut(s)	1164, 1179
AgeI	ACCGGT	2 cut(s)	540, 819
AgsI	TTSAA	7 cut(s)	220, 580, 811, 1210, 1315, 1465, 1612
AjiI	CACGTC	1 cut(s)	1165
AjnI	CCWGG	1 cut(s)	143
AleI	CACNNNNGTG	3 cut(s)	166, 986, 1292
AloI	GAACNNNNNNTCC	2 cut(s)	39, 71
Alw21I	GWGCWC	2 cut(s)	588, 1595
AlwI	GGATC	2 cut(s)	1266, 1392
Ama87I	CYCGRG	1 cut(s)	1487
AoxI	GGCC	4 cut(s)	1069, 1102, 1409, 1473
ApeKI	GCWGC	2 cut(s)	361, 889
ApoI	RAATTY	4 cut(s)	344, 1033, 1315, 1846
ArsI	GACNNNNNNTTYG	2 cut(s)	606, 638
AsiGI	ACCGGT	2 cut(s)	540, 819
Asp700I	GAANNNNTTC	1 cut(s)	1752
Asp718I	GGTACC	1 cut(s)	952
AspLEI	GCGC	7 cut(s)	77, 353, 683, 752, 834, 1356, 1733
AspS9I	GGNCC	9 cut(s)	337, 538, 798, 822, 1020, 1103, 1264, 1393, 1704
AsuC2I	CCSGG	4 cut(s)	1306, 1413, 1556, 1745
AsuHPI	GGTGA	6 cut(s)	655, 667, 1052, 1183, 1358, 1774
AsuII	TTCGAA	1 cut(s)	1583
AsuNHI	GCTAGC	1 cut(s)	382
AvaI	CYCGRG	1 cut(s)	1487
AvaII	GGWCC	8 cut(s)	337, 538, 798, 822, 1020, 1264, 1393, 1704
BalI	TGGCCA	1 cut(s)	1475
BanI	GGYRCC	3 cut(s)	680, 952, 1112
BanII	GRGCYC	2 cut(s)	1494, 1595
BbsI	GAAGAC	1 cut(s)	694
Bbv12I	GWGCWC	2 cut(s)	588, 1595
BbvCI	CCTCAGC	1 cut(s)	746
BbvI	GCAGC	2 cut(s)	348, 901
BccI	CCATC	2 cut(s)	653, 985
BceAI	ACGGC	5 cut(s)	625, 713, 1117, 1305, 1718
BcgI	CGANNNNNNTGC	2 cut(s)	1468, 1502
BciT130I	CCWGG	1 cut(s)	145
BcnI	CCSGG	4 cut(s)	1306, 1413, 1556, 1745
BfaI	CTAG	3 cut(s)	354, 383, 1067
BfoI	RGCGCY	4 cut(s)	684, 753, 835, 1734
BfuAI	ACCTGC	1 cut(s)	1507
BglI	GCCNNNNNGGC	2 cut(s)	1110, 1142
BisI	GCNGC	6 cut(s)	362, 835, 890, 1137, 1823, 1826
BlsI	GCNGC	6 cut(s)	363, 836, 891, 1138, 1824, 1827
BmcAI	AGTACT	1 cut(s)	851
Bme1390I	CCNGG	5 cut(s)	145, 1306, 1413, 1556, 1745
Bme18I	GGWCC	8 cut(s)	337, 538, 798, 822, 1020, 1264, 1393, 1704
BmeT110I	CYCGRG	1 cut(s)	1487
BmgBI	CACGTC	1 cut(s)	1165
BmgT120I	GGNCC	9 cut(s)	337, 538, 798, 822, 1020, 1103, 1264, 1393, 1704
BmiI	GGNNCC	4 cut(s)	682, 954, 1105, 1114
BmrFI	CCNGG	5 cut(s)	145, 1306, 1413, 1556, 1745
BmrI	ACTGGG	1 cut(s)	775
BmtI	GCTAGC	1 cut(s)	386
BmuI	ACTGGG	1 cut(s)	775
BpiI	GAAGAC	1 cut(s)	694
BplI	GAGNNNNNCTC	4 cut(s)	296, 328, 1022, 1054
Bpu10I	CCTNAGC	1 cut(s)	746
Bpu14I	TTCGAA	1 cut(s)	1583
BpuEI	CTTGAG	3 cut(s)	1049, 1174, 1478
BpuMI	CCSGG	4 cut(s)	1306, 1413, 1556, 1745
BsaAI	YACGTR	1 cut(s)	164
BsaHI	GRCGYC	4 cut(s)	681, 996, 1173, 1232
BsaJI	CCNNGG	8 cut(s)	103, 143, 333, 531, 1140, 1185, 1287, 1486
BsaWI	WCCGGW	6 cut(s)	477, 540, 795, 819, 1017, 1115
BsaXI	ACNNNNNCTCC	4 cut(s)	617, 647, 1091, 1121
Bsc4I	CCNNNNNNNGG	5 cut(s)	69, 149, 150, 1146, 1519
Bse118I	RCCGGY	3 cut(s)	540, 677, 819
Bse1I	ACTGG	4 cut(s)	556, 781, 847, 1396
BseBI	CCWGG	1 cut(s)	145
BseDI	CCNNGG	8 cut(s)	103, 143, 333, 531, 1140, 1185, 1287, 1486
BseGI	GGATG	1 cut(s)	1431
BseLI	CCNNNNNNNGG	5 cut(s)	69, 149, 150, 1146, 1519
BseMII	CTCAG	1 cut(s)	760
BseNI	ACTGG	4 cut(s)	556, 781, 847, 1396
BseRI	GAGGAG	3 cut(s)	1211, 1364, 1538
BseXI	GCAGC	2 cut(s)	348, 901
BseYI	CCCAGC	1 cut(s)	1727
Bsh1236I	CGCG	3 cut(s)	66, 837, 1356
Bsh1285I	CGRYCG	1 cut(s)	950
BshFI	GGCC	4 cut(s)	1071, 1104, 1411, 1475
BshNI	GGYRCC	3 cut(s)	680, 952, 1112
BshTI	ACCGGT	2 cut(s)	540, 819
BsiEI	CGRYCG	1 cut(s)	950
BsiHKAI	GWGCWC	2 cut(s)	588, 1595
BsiHKCI	CYCGRG	1 cut(s)	1487
BslI	CCNNNNNNNGG	5 cut(s)	69, 149, 150, 1146, 1519
BsnI	GGCC	4 cut(s)	1071, 1104, 1411, 1475
BsoBI	CYCGRG	1 cut(s)	1487
Bsp119I	TTCGAA	1 cut(s)	1583
Bsp1286I	GDGCHC	3 cut(s)	588, 1494, 1595
Bsp143I	GATC	5 cut(s)	947, 1024, 1245, 1258, 1384
Bsp19I	CCATGG	1 cut(s)	1140
BspANI	GGCC	4 cut(s)	1071, 1104, 1411, 1475
BspCNI	CTCAG	1 cut(s)	759
BspFNI	CGCG	3 cut(s)	66, 837, 1356
BspLI	GGNNCC	4 cut(s)	682, 954, 1105, 1114
BspMI	ACCTGC	1 cut(s)	1507
BspOI	GCTAGC	1 cut(s)	386
BspPI	GGATC	2 cut(s)	1266, 1392
BspQI	GCTCTTC	1 cut(s)	1812
BspT104I	TTCGAA	1 cut(s)	1583
BspT107I	GGYRCC	3 cut(s)	680, 952, 1112
BsrFI	RCCGGY	3 cut(s)	540, 677, 819
BsrI	ACTGG	4 cut(s)	556, 781, 847, 1396
BssAI	RCCGGY	3 cut(s)	540, 677, 819
BssECI	CCNNGG	8 cut(s)	103, 143, 333, 531, 1140, 1185, 1287, 1486
BssMI	GATC	5 cut(s)	947, 1024, 1245, 1258, 1384
BssNI	GRCGYC	4 cut(s)	681, 996, 1173, 1232
BssT1I	CCWWGG	4 cut(s)	333, 531, 1140, 1185
Bst2UI	CCWGG	1 cut(s)	145
Bst4CI	ACNGT	8 cut(s)	871, 942, 957, 985, 1268, 1379, 1762, 1787
Bst6I	CTCTTC	2 cut(s)	677, 1812
BstACI	GRCGYC	4 cut(s)	681, 996, 1173, 1232
BstBAI	YACGTR	1 cut(s)	164
BstBI	TTCGAA	1 cut(s)	1583
BstC8I	GCNNGC	3 cut(s)	384, 1477, 1595
BstDEI	CTNAG	3 cut(s)	301, 746, 1550
BstDSI	CCRYGG	3 cut(s)	103, 1140, 1287
BstEII	GGTNACC	1 cut(s)	1189
BstF5I	GGATG	1 cut(s)	1431
BstFNI	CGCG	3 cut(s)	66, 837, 1356
BstH2I	RGCGCY	4 cut(s)	684, 753, 835, 1734
BstHHI	GCGC	7 cut(s)	77, 353, 683, 752, 834, 1356, 1733
BstKTI	GATC	5 cut(s)	950, 1027, 1248, 1261, 1387
BstMBI	GATC	5 cut(s)	947, 1024, 1245, 1258, 1384
BstMCI	CGRYCG	1 cut(s)	950
BstMWI	GCNNNNNNNGC	9 cut(s)	72, 367, 843, 1110, 1142, 1240, 1476, 1513, 1728
BstNI	CCWGG	1 cut(s)	145
BstNSI	RCATGY	1 cut(s)	1183
BstPI	GGTNACC	1 cut(s)	1189
BstSCI	CCNGG	5 cut(s)	143, 1304, 1411, 1554, 1743
BstUI	CGCG	3 cut(s)	66, 837, 1356
BstV1I	GCAGC	2 cut(s)	348, 901
BstV2I	GAAGAC	1 cut(s)	694
BstX2I	RGATCY	1 cut(s)	1258
BstXI	CCANNNNNNTGG	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	1258
BsuRI	GGCC	4 cut(s)	1071, 1104, 1411, 1475
BtgI	CCRYGG	3 cut(s)	103, 1140, 1287
BtrI	CACGTC	1 cut(s)	1165
BtsCI	GGATG	1 cut(s)	1431
BveI	ACCTGC	1 cut(s)	1507
Cac8I	GCNNGC	3 cut(s)	384, 1477, 1595
CfoI	GCGC	7 cut(s)	77, 353, 683, 752, 834, 1356, 1733
Cfr10I	RCCGGY	3 cut(s)	540, 677, 819
Cfr13I	GGNCC	9 cut(s)	337, 538, 798, 822, 1020, 1103, 1264, 1393, 1704
CpoI	CGGWCCG	4 cut(s)	538, 822, 1020, 1704
CseI	GACGC	4 cut(s)	722, 1004, 1240, 1345
Csp6I	GTAC	5 cut(s)	287, 850, 953, 1168, 1783
CspAI	ACCGGT	2 cut(s)	540, 819
CspCI	CAANNNNNGTGG	2 cut(s)	329, 364
CspI	CGGWCCG	4 cut(s)	538, 822, 1020, 1704
CviAII	CATG	8 cut(s)	209, 315, 415, 427, 484, 916, 1141, 1180
CviQI	GTAC	5 cut(s)	287, 850, 953, 1168, 1783
DdeI	CTNAG	3 cut(s)	301, 746, 1550
DinI	GGCGCC	1 cut(s)	682
DpnI	GATC	5 cut(s)	949, 1026, 1247, 1260, 1386
DpnII	GATC	5 cut(s)	947, 1024, 1245, 1258, 1384
DraIII	CACNNNGTG	1 cut(s)	1762
DrdI	GACNNNNNNGTC	1 cut(s)	1237
DseDI	GACNNNNNNGTC	1 cut(s)	1237
EaeI	YGGCCR	1 cut(s)	1473
Eam1104I	CTCTTC	2 cut(s)	677, 1812
EarI	CTCTTC	2 cut(s)	677, 1812
EciI	GGCGGA	5 cut(s)	435, 551, 715, 833, 1574
Ecl136II	GAGCTC	1 cut(s)	1593
Eco130I	CCWWGG	4 cut(s)	333, 531, 1140, 1185
Eco24I	GRGCYC	2 cut(s)	1494, 1595
Eco32I	GATATC	1 cut(s)	904
Eco47I	GGWCC	8 cut(s)	337, 538, 798, 822, 1020, 1264, 1393, 1704
Eco53kI	GAGCTC	1 cut(s)	1593
Eco57I	CTGAAG	1 cut(s)	1025
Eco88I	CYCGRG	1 cut(s)	1487
Eco91I	GGTNACC	1 cut(s)	1189
EcoICRI	GAGCTC	1 cut(s)	1593
EcoO65I	GGTNACC	1 cut(s)	1189
EcoRII	CCWGG	1 cut(s)	143
EcoRV	GATATC	1 cut(s)	904
EcoT14I	CCWWGG	4 cut(s)	333, 531, 1140, 1185
EcoT38I	GRGCYC	2 cut(s)	1494, 1595
EgeI	GGCGCC	1 cut(s)	682
EheI	GGCGCC	1 cut(s)	682
ErhI	CCWWGG	4 cut(s)	333, 531, 1140, 1185
FaeI	CATG	8 cut(s)	212, 318, 418, 430, 487, 919, 1144, 1183
FalI	AAGNNNNNCTT	2 cut(s)	1073, 1105
FatI	CATG	8 cut(s)	208, 314, 414, 426, 483, 915, 1140, 1179
FauI	CCCGC	4 cut(s)	71, 579, 976, 1521
FblI	GTMKAC	4 cut(s)	552, 624, 1176, 1710
Fnu4HI	GCNGC	6 cut(s)	362, 835, 890, 1137, 1823, 1826
FokI	GGATG	1 cut(s)	1418
FriOI	GRGCYC	2 cut(s)	1494, 1595
Fsp4HI	GCNGC	6 cut(s)	362, 835, 890, 1137, 1823, 1826
FspBI	CTAG	3 cut(s)	354, 383, 1067
GlaI	GCGC	7 cut(s)	76, 352, 682, 751, 833, 1355, 1732
GluI	GCNGC	6 cut(s)	362, 835, 890, 1137, 1823, 1826
GsaI	CCCAGC	1 cut(s)	1731
HaeII	RGCGCY	4 cut(s)	684, 753, 835, 1734
HaeIII	GGCC	4 cut(s)	1071, 1104, 1411, 1475
HgaI	GACGC	4 cut(s)	722, 1004, 1240, 1345
HhaI	GCGC	7 cut(s)	77, 353, 683, 752, 834, 1356, 1733
Hin1I	GRCGYC	4 cut(s)	681, 996, 1173, 1232
Hin1II	CATG	8 cut(s)	212, 318, 418, 430, 487, 919, 1144, 1183
Hin6I	GCGC	7 cut(s)	75, 351, 681, 750, 832, 1354, 1731
HinP1I	GCGC	7 cut(s)	75, 351, 681, 750, 832, 1354, 1731
HincII	GTYRAC	2 cut(s)	1177, 1711
HindII	GTYRAC	2 cut(s)	1177, 1711
HphI	GGTGA	6 cut(s)	655, 667, 1052, 1183, 1358, 1774
Hpy188I	TCNGA	9 cut(s)	548, 658, 774, 787, 826, 1024, 1204, 1590, 1809
Hpy188III	TCNNGA	9 cut(s)	988, 1028, 1039, 1153, 1262, 1273, 1369, 1465, 1774
HpyAV	CCTTC	7 cut(s)	241, 651, 751, 811, 985, 1648, 1807
HpyCH4III	ACNGT	8 cut(s)	871, 942, 957, 985, 1268, 1379, 1762, 1787
HpyCH4IV	ACGT	4 cut(s)	163, 1164, 1173, 1679
HpyCH4V	TGCA	2 cut(s)	364, 1633
HpyF10VI	GCNNNNNNNGC	9 cut(s)	72, 367, 843, 1110, 1142, 1240, 1476, 1513, 1728
HpyF3I	CTNAG	3 cut(s)	301, 746, 1550
HpySE526I	ACGT	4 cut(s)	163, 1164, 1173, 1679
Hsp92I	GRCGYC	4 cut(s)	681, 996, 1173, 1232
Hsp92II	CATG	8 cut(s)	212, 318, 418, 430, 487, 919, 1144, 1183
HspAI	GCGC	7 cut(s)	75, 351, 681, 750, 832, 1354, 1731
KasI	GGCGCC	1 cut(s)	680
KpnI	GGTACC	1 cut(s)	956
Kzo9I	GATC	5 cut(s)	947, 1024, 1245, 1258, 1384
LguI	GCTCTTC	1 cut(s)	1812
LmnI	GCTCC	5 cut(s)	1086, 1351, 1541, 1590, 1658
Lsp1109I	GCAGC	2 cut(s)	348, 901
MaeI	CTAG	3 cut(s)	354, 383, 1067
MaeII	ACGT	4 cut(s)	163, 1164, 1173, 1679
MaeIII	GTNAC	1 cut(s)	1189
MalI	GATC	5 cut(s)	949, 1026, 1247, 1260, 1386
MboI	GATC	5 cut(s)	947, 1024, 1245, 1258, 1384
MboII	GAAGA	4 cut(s)	664, 694, 1018, 1829
MflI	RGATCY	1 cut(s)	1258
MhlI	GDGCHC	3 cut(s)	588, 1494, 1595
MlsI	TGGCCA	1 cut(s)	1475
MluCI	AATT	9 cut(s)	223, 344, 400, 509, 518, 1033, 1315, 1778, 1846
MluNI	TGGCCA	1 cut(s)	1475
Mly113I	GGCGCC	1 cut(s)	681
MlyI	GAGTC	8 cut(s)	314, 558, 626, 1193, 1555, 1609, 1724, 1813
MmeI	TCCRAC	4 cut(s)	714, 810, 849, 1787
Mox20I	TGGCCA	1 cut(s)	1475
MroXI	GAANNNNTTC	1 cut(s)	1752
MscI	TGGCCA	1 cut(s)	1475
MseI	TTAA	3 cut(s)	192, 399, 512
MslI	CAYNNNNRTG	3 cut(s)	166, 986, 1292
Msp20I	TGGCCA	1 cut(s)	1475
MspA1I	CMGCKG	3 cut(s)	892, 1539, 1828
MspR9I	CCNGG	5 cut(s)	145, 1306, 1413, 1556, 1745
MvaI	CCWGG	1 cut(s)	145
MvnI	CGCG	3 cut(s)	66, 837, 1356
MwoI	GCNNNNNNNGC	9 cut(s)	72, 367, 843, 1110, 1142, 1240, 1476, 1513, 1728
NarI	GGCGCC	1 cut(s)	681
NciI	CCSGG	4 cut(s)	1306, 1413, 1556, 1745
NcoI	CCATGG	1 cut(s)	1140
NdeII	GATC	5 cut(s)	947, 1024, 1245, 1258, 1384
NheI	GCTAGC	1 cut(s)	382
NlaIII	CATG	8 cut(s)	212, 318, 418, 430, 487, 919, 1144, 1183
NlaIV	GGNNCC	4 cut(s)	682, 954, 1105, 1114
NmeAIII	GCCGAG	4 cut(s)	1024, 1097, 1604, 1623
NmuCI	GTSAC	1 cut(s)	1189
NspI	RCATGY	1 cut(s)	1183
NspV	TTCGAA	1 cut(s)	1583
OliI	CACNNNNGTG	3 cut(s)	166, 986, 1292
PaqCI	CACCTGC	1 cut(s)	1507
PciI	ACATGT	1 cut(s)	1179
PciSI	GCTCTTC	1 cut(s)	1812
PcsI	WCGNNNNNNNCGW	4 cut(s)	984, 1167, 1170, 1719
PdmI	GAANNNNTTC	1 cut(s)	1752
PfeI	GAWTC	6 cut(s)	423, 527, 653, 792, 1585, 1832
PflFI	GACNNNGTC	2 cut(s)	698, 983
PinAI	ACCGGT	2 cut(s)	540, 819
PkrI	GCNGC	6 cut(s)	363, 836, 891, 1138, 1824, 1827
Ple19I	CGATCG	1 cut(s)	950
PleI	GAGTC	8 cut(s)	313, 557, 626, 1193, 1554, 1608, 1723, 1812
PluTI	GGCGCC	1 cut(s)	684
PpsI	GAGTC	8 cut(s)	313, 557, 626, 1193, 1554, 1608, 1723, 1812
Ppu21I	YACGTR	1 cut(s)	164
PscI	ACATGT	1 cut(s)	1179
Psp124BI	GAGCTC	1 cut(s)	1595
Psp1406I	AACGTT	1 cut(s)	1679
Psp6I	CCWGG	1 cut(s)	143
PspEI	GGTNACC	1 cut(s)	1189
PspFI	CCCAGC	1 cut(s)	1727
PspGI	CCWGG	1 cut(s)	143
PspN4I	GGNNCC	4 cut(s)	682, 954, 1105, 1114
PspPI	GGNCC	9 cut(s)	337, 538, 798, 822, 1020, 1103, 1264, 1393, 1704
PsrI	GAACNNNNNNTAC	2 cut(s)	590, 622
PsuI	RGATCY	1 cut(s)	1258
PsyI	GACNNNGTC	2 cut(s)	698, 983
PvuI	CGATCG	1 cut(s)	950
RsaI	GTAC	5 cut(s)	288, 851, 954, 1169, 1784
RsaNI	GTAC	5 cut(s)	287, 850, 953, 1168, 1783
RseI	CAYNNNNRTG	3 cut(s)	166, 986, 1292
Rsr2I	CGGWCCG	4 cut(s)	538, 822, 1020, 1704
RsrII	CGGWCCG	4 cut(s)	538, 822, 1020, 1704
SacI	GAGCTC	1 cut(s)	1595
SalI	GTCGAC	2 cut(s)	1175, 1709
SapI	GCTCTTC	1 cut(s)	1812
SaqAI	TTAA	3 cut(s)	192, 399, 512
SatI	GCNGC	6 cut(s)	362, 835, 890, 1137, 1823, 1826
Sau3AI	GATC	5 cut(s)	947, 1024, 1245, 1258, 1384
Sau96I	GGNCC	9 cut(s)	337, 538, 798, 822, 1020, 1103, 1264, 1393, 1704
ScaI	AGTACT	1 cut(s)	851
SchI	GAGTC	8 cut(s)	314, 558, 626, 1193, 1555, 1609, 1724, 1813
ScrFI	CCNGG	5 cut(s)	145, 1306, 1413, 1556, 1745
SduI	GDGCHC	3 cut(s)	588, 1494, 1595
SfoI	GGCGCC	1 cut(s)	682
SfuI	TTCGAA	1 cut(s)	1583
SgrAI	CRCCGGYG	1 cut(s)	677
SgrDI	CGTCGACG	1 cut(s)	1709
SinI	GGWCC	8 cut(s)	337, 538, 798, 822, 1020, 1264, 1393, 1704
SmiMI	CAYNNNNRTG	3 cut(s)	166, 986, 1292
SmlI	CTYRAG	3 cut(s)	1028, 1153, 1493
SmoI	CTYRAG	3 cut(s)	1028, 1153, 1493
Sse9I	AATT	9 cut(s)	223, 344, 400, 509, 518, 1033, 1315, 1778, 1846
SspDI	GGCGCC	1 cut(s)	680
SspMI	CTAG	3 cut(s)	354, 383, 1067
SstI	GAGCTC	1 cut(s)	1595
StyD4I	CCNGG	5 cut(s)	143, 1304, 1411, 1554, 1743
StyI	CCWWGG	4 cut(s)	333, 531, 1140, 1185
TaaI	ACNGT	8 cut(s)	871, 942, 957, 985, 1268, 1379, 1762, 1787
TaiI	ACGT	4 cut(s)	166, 1167, 1176, 1682
TaqII	GACCGA	1 cut(s)	1692
TasI	AATT	9 cut(s)	223, 344, 400, 509, 518, 1033, 1315, 1778, 1846
TatI	WGTACW	1 cut(s)	849
TauI	GCSGC	4 cut(s)	837, 1139, 1825, 1828
TfiI	GAWTC	6 cut(s)	423, 527, 653, 792, 1585, 1832
Tru1I	TTAA	3 cut(s)	192, 399, 512
Tru9I	TTAA	3 cut(s)	192, 399, 512
TseFI	GTSAC	1 cut(s)	1189
TseI	GCWGC	2 cut(s)	361, 889
Tsp45I	GTSAC	1 cut(s)	1189
TspDTI	ATGAA	6 cut(s)	415, 472, 894, 932, 1388, 1667
TspGWI	ACGGA	8 cut(s)	48, 54, 228, 248, 610, 804, 1292, 1696
Tth111I	GACNNNGTC	2 cut(s)	698, 983
VpaK11BI	GGWCC	8 cut(s)	337, 538, 798, 822, 1020, 1264, 1393, 1704
XapI	RAATTY	4 cut(s)	344, 1033, 1315, 1846
XceI	RCATGY	1 cut(s)	1183
XcmI	CCANNNNNNNNNTGG	2 cut(s)	141, 496
XmiI	GTMKAC	4 cut(s)	552, 624, 1176, 1710
XmnI	GAANNNNTTC	1 cut(s)	1752
XspI	CTAG	3 cut(s)	354, 383, 1067
ZraI	GACGTC	1 cut(s)	1174
ZrmI	AGTACT	1 cut(s)	851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.