Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001360

Physical Location & Seq

Genomic Coordinates Forward (+)

77743720 .. 77744253

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG487600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGAACGTCGACGACTCCGCCACGGCCGACGACGACTTCCGCAACATACGGTGGAGGACCGTGCCGTTCACGCACCCATCTACGCTGGAGACTATTGCCATGGAAGCCGATCTCAAATCGAAGATCAAGTCCGATTTGGAGTCGTTTCTCAAAGCCAAGCAGTACAACAACCGACTCGGCCGCCTCTGGAAGCGAAGCTTCTTGCTTTACGGCCCCTCCGGCACTGGGAAATCCAGCTTTATCACCACCATGGCCAATTTCCTCAGCTACGACGTCTACGATCTCGACCTCTCTAAGGTTAAAGACGACTCGGAGTTGAAGATGCTTCTTTTACAGACCACGAGCAAGTCGGTGATCCTCATCGAGGAACTGGATCGGTTCTTCGCCGAGAAATCGACGGCGGTCAGCTTCTCCGGCATATCGAACTTCATGGACGGCTTGCTCAACTCGTGCTACGCCGAAGAGAGTCATGGTGTTCATGATGAACTCGAAGGACCAGGTCGACCCGAATTTCCTCAGACTGGGTCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

177

Amino Acids

19.94

Weight (kDa)

4.99

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	68 - 149	6.8e-10	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46620
fragaria_vesca	FvH4_7g17220 FvH4_7g32500
malus_domestica	MD01G1085900.v1.1 MD01G1225700.v1.1 MD02G1229200.v1.1 MD07G1155000.v1.1 MD07G1296200.v1.1
prunus_persica	Prupe.2G193700_v2.0.a1 Prupe.2G315800_v2.0.a1
pyrus_communis	pycom01g23420 pycom07g15210 pycom07g26900
rosa_chinensis	RchiOBHm_Chr1g0360611 RchiOBHm_Chr1g0382341 RchiOBHm_Chr2g0086831 RchiOBHm_Chr2g0139501 RchiOBHm_Chr3g0458211 RchiOBHm_Chr3g0478421 RchiOBHm_Chr4g0427361
rosa_laevigata	RLG00000002572 RLG00000009827 RLG00000026185 RLG00000027795 RLG00000030781
rosa_multiflora	Rmu_sc0000110.1_g000040 Rmu_sc0001436.1_g000033 Rmu_sc0002188.1_g000003 Rmu_sc0002535.1_g000007 Rmu_sc0003020.1_g000016 Rmu_sc0003481.1_g000013 Rmu_sc0004697.1_g000002 Rmu_sc0007558.1_g000001 Rmu_sc0010192.1_g000001 Rmu_sc0015587.1_g000001 Rmu_sc0042341.1_g000002
rosa_roxburghii	Rroxscaffold_2G00093530 Rroxscaffold_4G00278180
rosa_rugosa	Rorug01G0280000 Rorug01G0433500 Rorug02G0149500 Rorug05G0571400
rosa_samantha	Rh1AG292200 Rh1BG257100 Rh1BG414500 Rh1CG274900 Rh1DG287000 Rh1DG446600 Rh5BG487600 Rh5CG511800
rosa_wichuraiana	Rw1G025870 Rw1G041280 Rw5G043520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	276
AccI	GTMKAC	3 cut(s)	9, 276, 502
AciI	CCGC	4 cut(s)	18, 40, 181, 401
AclWI	GGATC	2 cut(s)	349, 381
AcoI	YGGCCR	3 cut(s)	24, 178, 252
AcsI	RAATTY	1 cut(s)	509
AcyI	GRCGYC	1 cut(s)	273
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	4 cut(s)	225, 295, 364, 521
AgsI	TTSAA	1 cut(s)	319
AjnI	CCWGG	1 cut(s)	496
AluBI	AGCT	4 cut(s)	198, 237, 267, 408
AluI	AGCT	4 cut(s)	198, 237, 267, 408
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	2 cut(s)	349, 381
AoxI	GGCC	4 cut(s)	24, 178, 211, 252
ApoI	RAATTY	1 cut(s)	509
ArsI	GACNNNNNNTTYG	2 cut(s)	113, 145
AspS9I	GGNCC	3 cut(s)	57, 212, 494
AsuHPI	GGTGA	2 cut(s)	235, 364
AvaII	GGWCC	2 cut(s)	57, 494
BalI	TGGCCA	1 cut(s)	254
BauI	CACGAG	2 cut(s)	340, 448
BbvCI	CCTCAGC	1 cut(s)	263
BccI	CCATC	1 cut(s)	85
BceAI	ACGGC	5 cut(s)	39, 49, 226, 414, 451
BciT130I	CCWGG	1 cut(s)	498
BcoDI	GTCTC	1 cut(s)	83
BglI	GCCNNNNNGGC	1 cut(s)	219
BisI	GCNGC	1 cut(s)	181
BlsI	GCNGC	1 cut(s)	182
Bme1390I	CCNGG	1 cut(s)	498
Bme18I	GGWCC	2 cut(s)	57, 494
BmgT120I	GGNCC	3 cut(s)	57, 212, 494
BmiI	GGNNCC	1 cut(s)	214
BmrFI	CCNGG	1 cut(s)	498
BmrI	ACTGGG	2 cut(s)	234, 531
BmsI	GCATC	1 cut(s)	312
BmuI	ACTGGG	2 cut(s)	234, 531
BoxI	GACNNNNGTC	1 cut(s)	401
BpmI	CTGGAG	1 cut(s)	107
Bpu10I	CCTNAGC	1 cut(s)	263
BsaBI	GATNNNNATC	1 cut(s)	359
BsaHI	GRCGYC	1 cut(s)	273
BsaJI	CCNNGG	3 cut(s)	21, 99, 249
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	4 cut(s)	225, 295, 364, 521
Bse1I	ACTGG	3 cut(s)	229, 375, 526
Bse8I	GATNNNNATC	1 cut(s)	359
BseBI	CCWGG	1 cut(s)	498
BseDI	CCNNGG	3 cut(s)	21, 99, 249
BseJI	GATNNNNATC	1 cut(s)	359
BseLI	CCNNNNNNNGG	4 cut(s)	225, 295, 364, 521
BseMII	CTCAG	2 cut(s)	277, 530
BseNI	ACTGG	3 cut(s)	229, 375, 526
BseX3I	CGGCCG	2 cut(s)	24, 178
Bsh1285I	CGRYCG	2 cut(s)	27, 181
BshFI	GGCC	4 cut(s)	26, 180, 213, 254
BsiEI	CGRYCG	2 cut(s)	27, 181
BsiSI	CCGG	2 cut(s)	219, 414
BslI	CCNNNNNNNGG	4 cut(s)	225, 295, 364, 521
BsmAI	GTCTC	1 cut(s)	83
BsnI	GGCC	4 cut(s)	26, 180, 213, 254
Bsp143I	GATC	5 cut(s)	109, 123, 280, 354, 373
Bsp19I	CCATGG	2 cut(s)	99, 249
BspACI	CCGC	4 cut(s)	18, 40, 181, 401
BspANI	GGCC	4 cut(s)	26, 180, 213, 254
BspCNI	CTCAG	2 cut(s)	276, 529
BspHI	TCATGA	1 cut(s)	478
BspLI	GGNNCC	1 cut(s)	214
BspPI	GGATC	2 cut(s)	349, 381
BsrI	ACTGG	3 cut(s)	229, 375, 526
BssECI	CCNNGG	3 cut(s)	21, 99, 249
BssMI	GATC	5 cut(s)	109, 123, 280, 354, 373
BssNI	GRCGYC	1 cut(s)	273
BssSI	CACGAG	2 cut(s)	340, 448
BssT1I	CCWWGG	2 cut(s)	99, 249
Bst2BI	CACGAG	2 cut(s)	340, 448
Bst2UI	CCWGG	1 cut(s)	498
Bst4CI	ACNGT	2 cut(s)	51, 61
Bst6I	CTCTTC	1 cut(s)	456
BstACI	GRCGYC	1 cut(s)	273
BstC8I	GCNNGC	1 cut(s)	440
BstDEI	CTNAG	3 cut(s)	263, 294, 516
BstDSI	CCRYGG	3 cut(s)	21, 99, 249
BstENI	CCTNNNNNAGG	2 cut(s)	293, 362
BstKTI	GATC	5 cut(s)	112, 126, 283, 357, 376
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	5 cut(s)	109, 123, 280, 354, 373
BstMCI	CGRYCG	2 cut(s)	27, 181
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 104, 219, 414
BstNI	CCWGG	1 cut(s)	498
BstPAI	GACNNNNGTC	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	496
BstZI	CGGCCG	2 cut(s)	24, 178
BsuRI	GGCC	4 cut(s)	26, 180, 213, 254
BtgI	CCRYGG	3 cut(s)	21, 99, 249
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	440
CciI	TCATGA	1 cut(s)	478
Cfr13I	GGNCC	3 cut(s)	57, 212, 494
CsiI	ACCWGGT	1 cut(s)	496
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	5 cut(s)	100, 250, 430, 470, 479
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	3 cut(s)	263, 294, 516
DpnI	GATC	5 cut(s)	111, 125, 282, 356, 375
DpnII	GATC	5 cut(s)	109, 123, 280, 354, 373
EaeI	YGGCCR	3 cut(s)	24, 178, 252
EagI	CGGCCG	2 cut(s)	24, 178
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
EciI	GGCGGA	1 cut(s)	7
EclXI	CGGCCG	2 cut(s)	24, 178
Eco130I	CCWWGG	2 cut(s)	99, 249
Eco47I	GGWCC	2 cut(s)	57, 494
Eco52I	CGGCCG	2 cut(s)	24, 178
EcoNI	CCTNNNNNAGG	2 cut(s)	293, 362
EcoRII	CCWGG	1 cut(s)	496
EcoT14I	CCWWGG	2 cut(s)	99, 249
ErhI	CCWWGG	2 cut(s)	99, 249
FaeI	CATG	5 cut(s)	103, 253, 433, 473, 482
FaiI	YATR	7 cut(s)	47, 101, 251, 419, 431, 471, 480
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FatI	CATG	5 cut(s)	99, 249, 429, 469, 478
FblI	GTMKAC	3 cut(s)	9, 276, 502
Fnu4HI	GCNGC	1 cut(s)	181
Fsp4HI	GCNGC	1 cut(s)	181
GluI	GCNGC	1 cut(s)	181
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	4 cut(s)	26, 180, 213, 254
HapII	CCGG	2 cut(s)	219, 414
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	5 cut(s)	103, 253, 433, 473, 482
HincII	GTYRAC	2 cut(s)	10, 503
HindII	GTYRAC	2 cut(s)	10, 503
HindIII	AAGCTT	1 cut(s)	196
HinfI	GANTC	5 cut(s)	14, 140, 174, 308, 466
HpaII	CCGG	2 cut(s)	219, 414
HphI	GGTGA	2 cut(s)	235, 364
Hpy166II	GTNNAC	4 cut(s)	10, 69, 277, 503
Hpy188I	TCNGA	3 cut(s)	133, 313, 519
Hpy188III	TCNNGA	3 cut(s)	187, 284, 479
Hpy8I	GTNNAC	4 cut(s)	10, 69, 277, 503
Hpy99I	CGWCG	6 cut(s)	11, 14, 32, 35, 275, 400
HpyAV	CCTTC	1 cut(s)	485
HpyCH4III	ACNGT	2 cut(s)	51, 61
HpyCH4IV	ACGT	2 cut(s)	6, 273
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 104, 219, 414
HpyF3I	CTNAG	3 cut(s)	263, 294, 516
HpySE526I	ACGT	2 cut(s)	6, 273
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	5 cut(s)	103, 253, 433, 473, 482
Kzo9I	GATC	5 cut(s)	109, 123, 280, 354, 373
LweI	GCATC	1 cut(s)	312
MabI	ACCWGGT	1 cut(s)	496
MaeII	ACGT	2 cut(s)	6, 273
MalI	GATC	5 cut(s)	111, 125, 282, 356, 375
MboI	GATC	5 cut(s)	109, 123, 280, 354, 373
MboII	GAAGA	4 cut(s)	133, 331, 373, 473
MlsI	TGGCCA	1 cut(s)	254
MluCI	AATT	3 cut(s)	256, 509, 529
MluNI	TGGCCA	1 cut(s)	254
MlyI	GAGTC	5 cut(s)	8, 149, 168, 302, 475
MnlI	CCTC	8 cut(s)	48, 194, 226, 272, 299, 358, 368, 525
Mox20I	TGGCCA	1 cut(s)	254
MscI	TGGCCA	1 cut(s)	254
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	1 cut(s)	248
Msp20I	TGGCCA	1 cut(s)	254
MspI	CCGG	2 cut(s)	219, 414
MspR9I	CCNGG	1 cut(s)	498
MvaI	CCWGG	1 cut(s)	498
MwoI	GCNNNNNNNGC	4 cut(s)	70, 104, 219, 414
NcoI	CCATGG	2 cut(s)	99, 249
NdeII	GATC	5 cut(s)	109, 123, 280, 354, 373
NlaIII	CATG	5 cut(s)	103, 253, 433, 473, 482
NlaIV	GGNNCC	1 cut(s)	214
NmeAIII	GCCGAG	2 cut(s)	156, 412
PagI	TCATGA	1 cut(s)	478
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PflFI	GACNNNGTC	2 cut(s)	498, 523
PkrI	GCNGC	1 cut(s)	182
PleI	GAGTC	5 cut(s)	8, 148, 168, 302, 474
PpsI	GAGTC	5 cut(s)	8, 148, 168, 302, 474
PshAI	GACNNNNGTC	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	496
PspGI	CCWGG	1 cut(s)	496
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	3 cut(s)	57, 212, 494
PsyI	GACNNNGTC	2 cut(s)	498, 523
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	248
SalI	GTCGAC	2 cut(s)	8, 501
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	1 cut(s)	181
Sau3AI	GATC	5 cut(s)	109, 123, 280, 354, 373
Sau96I	GGNCC	3 cut(s)	57, 212, 494
SchI	GAGTC	5 cut(s)	8, 149, 168, 302, 475
ScrFI	CCNGG	1 cut(s)	498
SetI	ASST	9 cut(s)	9, 200, 239, 269, 276, 291, 300, 410, 502
SexAI	ACCWGGT	1 cut(s)	496
SfaNI	GCATC	1 cut(s)	312
SgrDI	CGTCGACG	1 cut(s)	8
SinI	GGWCC	2 cut(s)	57, 494
SmiMI	CAYNNNNRTG	1 cut(s)	248
Sse9I	AATT	3 cut(s)	256, 509, 529
SsiI	CCGC	4 cut(s)	18, 40, 181, 401
StyD4I	CCNGG	1 cut(s)	496
StyI	CCWWGG	2 cut(s)	99, 249
TaaI	ACNGT	2 cut(s)	51, 61
TaiI	ACGT	2 cut(s)	9, 276
TaqI	TCGA	8 cut(s)	9, 119, 285, 363, 395, 422, 489, 502
TasI	AATT	3 cut(s)	256, 509, 529
TatI	WGTACW	1 cut(s)	162
TauI	GCSGC	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	1 cut(s)	229
TspDTI	ATGAA	4 cut(s)	17, 418, 467, 498
TspRI	CASTG	1 cut(s)	229
Tth111I	GACNNNGTC	2 cut(s)	498, 523
VpaK11BI	GGWCC	2 cut(s)	57, 494
XagI	CCTNNNNNAGG	2 cut(s)	293, 362
XapI	RAATTY	1 cut(s)	509
XmiI	GTMKAC	3 cut(s)	9, 276, 502
ZraI	GACGTC	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.