Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001330

Physical Location & Seq

Genomic Coordinates Reverse (-)

3510663 .. 3513379

Gene Structure 2717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G11210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGTTGGACCCGCGCGGCCTCAGATCGTTTTGTTTGGATCTTCCATTGTTCAGATGAGCTTTGGCCATGGTGGTTGGGGCGCCATTCTTTCCGAGGTCTACGCTCGTAAGGCCGACATCATTCTGCGAGGATATTATGGATGGAACTCTTCTCGTGCTTTGGAAGTTGTCGACCAAGTGTTCCCCAAGGATGCTGCAGTACAACCTTCTCTGGTCATTGTCTATTTTGGAGGAAACGACTCAATGGCGCCTCACTCGTCTGGACTAGGACCTCATGTACCACTTACTGAATATGTTGATAACATGAAGAAGATCGCTCTTCATCTTCAGAGCCTTTCAGACTTCACCCGAATCATATTTCTTAGTTCTCCTCCAGTGGATGAGGCTAAAGTTCGCCAGAACCAAAGCCCATACTTGAGCGAGGTAATCCGCACAAACGACCTCTGCAAGACTTATTCAGATGCTTGTGTAGAGCTGTGCCAAGAACTCGGCCTAGAAGTAGTTGATCTCTTCTCTACTTTTCAGAAAGCAGATGACTGGAAAACTGTTTGCTTCACAGACGGGATTCATTTGTCAGCACAAGGAAGCAAAATAGTAGCGGGAGAGATACTAAGAGTGGTTAAAGAAGCGGAATGGCATCCATCACTTCACTGGAAATCAATGCCAACAGAATTCGCAGATGACTCTCCTTATGATCTTGTATCAGCAGATGGCAAACAGACAGTAAATTCTTCAGAATGGACTTATTTCTGGGAAGAACAATGGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0048046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL Lipase_GDSL_2

Protein Analysis

256

Amino Acids

28.58

Weight (kDa)

4.89

Isoelectric Point (pI)

44.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	9 - 202	1.8e-21	GDSL-like Lipase/Acylhydrolase
Lipase_GDSL_2	PF13472	11 - 197	3.6e-21	GDSL-like Lipase/Acylhydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11210
fragaria_vesca	FvH4_4g09350 FvH4_6g11460 FvH4_6g11470 FvH4_6g17731 FvH4_7g24410 FvH4_7g24410 FvH4_7g24410
malus_domestica	MD01G1152500.v1.1 MD04G1152200.v1.1 MD04G1152600.v1.1 MD07G1221600.v1.1
prunus_persica	Prupe.2G249500_v2.0.a1 Prupe.2G249500_v2.0.a1 Prupe.6G277200_v2.0.a1 Prupe.6G277200_v2.0.a1
pyrus_communis	pycom01g17020 pycom04g13820 pycom04g13830 pycom07g20000
rosa_chinensis	RchiOBHm_Chr1g0370111 RchiOBHm_Chr3g0463151 RchiOBHm_Chr3g0463161 RchiOBHm_Chr4g0412941
rosa_laevigata	RLG00000024807 RLG00000024809 RLG00000027073
rosa_multiflora	Rmu_sc0008124.1_g000006 Rmu_sc0011509.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286810 Rroxscaffold_6G00416920 Rroxscaffold_6G00416930
rosa_rugosa	Rorug01G0354100 Rorug01G0354200 Rorug03G0061800 Rorug03G0061800 Rorug03G0061800 Rorug03G0061800
rosa_samantha	Rh1AG362700 Rh1BG325900 Rh1CG339200 Rh3AG120000 Rh3AG120100 Rh3BG124400 Rh3BG124500 Rh3CG126400 Rh3CG126500 Rh3DG125400 Rh3DG125500 Rh4AG176700 Rh4CG187700
rosa_wichuraiana	Rw1G031920 Rw3G010150 Rw3G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	80, 247
AccI	GTMKAC	2 cut(s)	99, 171
AccII	CGCG	2 cut(s)	14, 16
AciI	CCGC	5 cut(s)	12, 16, 430, 599, 629
AclWI	GGATC	1 cut(s)	46
AcoI	YGGCCR	1 cut(s)	64
AcsI	RAATTY	2 cut(s)	671, 727
AcuI	CTGAAG	2 cut(s)	311, 717
AcyI	GRCGYC	2 cut(s)	81, 248
AfaI	GTAC	2 cut(s)	201, 279
AluBI	AGCT	2 cut(s)	60, 475
AluI	AGCT	2 cut(s)	60, 475
AlwI	GGATC	1 cut(s)	46
AoxI	GGCC	4 cut(s)	17, 64, 111, 490
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	2 cut(s)	671, 727
AspLEI	GCGC	3 cut(s)	16, 83, 250
AspS9I	GGNCC	2 cut(s)	8, 269
AsuHPI	GGTGA	1 cut(s)	337
AvaII	GGWCC	2 cut(s)	8, 269
BalI	TGGCCA	1 cut(s)	66
BanI	GGYRCC	2 cut(s)	80, 247
BauI	CACGAG	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	3 cut(s)	135, 649, 704
BfaI	CTAG	2 cut(s)	266, 494
BfmI	CTRYAG	1 cut(s)	195
BfoI	RGCGCY	2 cut(s)	84, 251
BisI	GCNGC	2 cut(s)	17, 195
BlsI	GCNGC	2 cut(s)	18, 196
Bme18I	GGWCC	2 cut(s)	8, 269
BmgT120I	GGNCC	2 cut(s)	8, 269
BmiI	GGNNCC	3 cut(s)	10, 82, 249
BmsI	GCATC	3 cut(s)	181, 451, 646
BpmI	CTGGAG	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	436
BsaHI	GRCGYC	2 cut(s)	81, 248
BsaJI	CCNNGG	3 cut(s)	67, 93, 186
Bse1I	ACTGG	3 cut(s)	374, 542, 656
BseDI	CCNNGG	3 cut(s)	67, 93, 186
BseGI	GGATG	4 cut(s)	146, 196, 385, 637
BseMII	CTCAG	1 cut(s)	35
BseNI	ACTGG	3 cut(s)	374, 542, 656
BseRI	GAGGAG	1 cut(s)	360
BseXI	GCAGC	1 cut(s)	181
Bsh1236I	CGCG	2 cut(s)	14, 16
BshFI	GGCC	4 cut(s)	19, 66, 113, 492
BshNI	GGYRCC	2 cut(s)	80, 247
BsnI	GGCC	4 cut(s)	19, 66, 113, 492
Bsp143I	GATC	5 cut(s)	24, 38, 312, 505, 694
Bsp19I	CCATGG	1 cut(s)	67
BspACI	CCGC	5 cut(s)	12, 16, 430, 599, 629
BspANI	GGCC	4 cut(s)	19, 66, 113, 492
BspCNI	CTCAG	1 cut(s)	34
BspFNI	CGCG	2 cut(s)	14, 16
BspLI	GGNNCC	3 cut(s)	10, 82, 249
BspMAI	CTGCAG	1 cut(s)	199
BspPI	GGATC	1 cut(s)	46
BspQI	GCTCTTC	1 cut(s)	324
BspT107I	GGYRCC	2 cut(s)	80, 247
BsrI	ACTGG	3 cut(s)	374, 542, 656
BssECI	CCNNGG	3 cut(s)	67, 93, 186
BssMI	GATC	5 cut(s)	24, 38, 312, 505, 694
BssNI	GRCGYC	2 cut(s)	81, 248
BssSI	CACGAG	1 cut(s)	153
BssT1I	CCWWGG	2 cut(s)	67, 186
Bst2BI	CACGAG	1 cut(s)	153
Bst4CI	ACNGT	2 cut(s)	547, 724
Bst6I	CTCTTC	3 cut(s)	154, 324, 515
BstACI	GRCGYC	2 cut(s)	81, 248
BstDEI	CTNAG	3 cut(s)	21, 362, 611
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	4 cut(s)	146, 196, 385, 637
BstFNI	CGCG	2 cut(s)	14, 16
BstH2I	RGCGCY	2 cut(s)	84, 251
BstHHI	GCGC	3 cut(s)	16, 83, 250
BstKTI	GATC	5 cut(s)	27, 41, 315, 508, 697
BstMBI	GATC	5 cut(s)	24, 38, 312, 505, 694
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstSFI	CTRYAG	1 cut(s)	195
BstUI	CGCG	2 cut(s)	14, 16
BstV1I	GCAGC	1 cut(s)	181
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BsuRI	GGCC	4 cut(s)	19, 66, 113, 492
BtgI	CCRYGG	1 cut(s)	67
BtsCI	GGATG	4 cut(s)	146, 196, 385, 637
BtsIMutI	CAGTG	2 cut(s)	381, 649
CfoI	GCGC	3 cut(s)	16, 83, 250
Cfr13I	GGNCC	2 cut(s)	8, 269
Csp6I	GTAC	2 cut(s)	200, 278
CviAII	CATG	3 cut(s)	68, 275, 304
CviJI	RGCY	9 cut(s)	19, 60, 66, 113, 333, 386, 408, 475, 492
CviKI_1	RGCY	9 cut(s)	19, 60, 66, 113, 333, 386, 408, 475, 492
CviQI	GTAC	2 cut(s)	200, 278
DdeI	CTNAG	3 cut(s)	21, 362, 611
DinI	GGCGCC	2 cut(s)	82, 249
DpnI	GATC	5 cut(s)	26, 40, 314, 507, 696
DpnII	GATC	5 cut(s)	24, 38, 312, 505, 694
EaeI	YGGCCR	1 cut(s)	64
Eam1104I	CTCTTC	3 cut(s)	154, 324, 515
EarI	CTCTTC	3 cut(s)	154, 324, 515
Eco130I	CCWWGG	2 cut(s)	67, 186
Eco47I	GGWCC	2 cut(s)	8, 269
Eco57I	CTGAAG	2 cut(s)	311, 717
EcoO109I	RGGNCCY	1 cut(s)	269
EcoRI	GAATTC	1 cut(s)	671
EcoT14I	CCWWGG	2 cut(s)	67, 186
EgeI	GGCGCC	2 cut(s)	82, 249
EheI	GGCGCC	2 cut(s)	82, 249
ErhI	CCWWGG	2 cut(s)	67, 186
FaeI	CATG	3 cut(s)	71, 278, 307
FaiI	YATR	8 cut(s)	69, 138, 276, 294, 305, 356, 412, 693
FatI	CATG	3 cut(s)	67, 274, 303
FauI	CCCGC	2 cut(s)	19, 592
FblI	GTMKAC	2 cut(s)	99, 171
Fnu4HI	GCNGC	2 cut(s)	17, 195
FokI	GGATG	4 cut(s)	153, 203, 392, 624
Fsp4HI	GCNGC	2 cut(s)	17, 195
FspBI	CTAG	2 cut(s)	266, 494
GlaI	GCGC	3 cut(s)	15, 82, 249
GluI	GCNGC	2 cut(s)	17, 195
GsuI	CTGGAG	1 cut(s)	357
HaeII	RGCGCY	2 cut(s)	84, 251
HaeIII	GGCC	4 cut(s)	19, 66, 113, 492
HhaI	GCGC	3 cut(s)	16, 83, 250
Hin1I	GRCGYC	2 cut(s)	81, 248
Hin1II	CATG	3 cut(s)	71, 278, 307
Hin6I	GCGC	3 cut(s)	14, 81, 248
HinP1I	GCGC	3 cut(s)	14, 81, 248
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	4 cut(s)	239, 351, 565, 683
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	2 cut(s)	100, 172
Hpy188I	TCNGA	8 cut(s)	24, 54, 94, 330, 340, 460, 525, 736
Hpy188III	TCNNGA	1 cut(s)	261
Hpy8I	GTNNAC	2 cut(s)	100, 172
HpyAV	CCTTC	1 cut(s)	216
HpyCH4III	ACNGT	2 cut(s)	547, 724
HpyCH4V	TGCA	2 cut(s)	197, 447
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	3 cut(s)	21, 362, 611
Hsp92I	GRCGYC	2 cut(s)	81, 248
Hsp92II	CATG	3 cut(s)	71, 278, 307
HspAI	GCGC	3 cut(s)	14, 81, 248
KasI	GGCGCC	2 cut(s)	80, 247
Kzo9I	GATC	5 cut(s)	24, 38, 312, 505, 694
LguI	GCTCTTC	1 cut(s)	324
LpnPI	CCDG	7 cut(s)	197, 246, 387, 410, 523, 637, 736
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	3 cut(s)	181, 451, 646
MaeI	CTAG	2 cut(s)	266, 494
MalI	GATC	5 cut(s)	26, 40, 314, 507, 696
MboI	GATC	5 cut(s)	24, 38, 312, 505, 694
MboII	GAAGA	9 cut(s)	33, 141, 311, 317, 319, 322, 502, 723, 767
MflI	RGATCY	1 cut(s)	38
MlsI	TGGCCA	1 cut(s)	66
MluCI	AATT	2 cut(s)	671, 727
MluNI	TGGCCA	1 cut(s)	66
Mly113I	GGCGCC	2 cut(s)	81, 248
MlyI	GAGTC	2 cut(s)	233, 677
Mox20I	TGGCCA	1 cut(s)	66
MscI	TGGCCA	1 cut(s)	66
MseI	TTAA	1 cut(s)	621
Msp20I	TGGCCA	1 cut(s)	66
MvnI	CGCG	2 cut(s)	14, 16
MwoI	GCNNNNNNNGC	1 cut(s)	110
NarI	GGCGCC	2 cut(s)	81, 248
NcoI	CCATGG	1 cut(s)	67
NdeII	GATC	5 cut(s)	24, 38, 312, 505, 694
NlaIII	CATG	3 cut(s)	71, 278, 307
NlaIV	GGNNCC	3 cut(s)	10, 82, 249
NmeAIII	GCCGAG	1 cut(s)	468
PciSI	GCTCTTC	1 cut(s)	324
PfeI	GAWTC	2 cut(s)	351, 565
PkrI	GCNGC	2 cut(s)	18, 196
PleI	GAGTC	2 cut(s)	233, 677
PluTI	GGCGCC	2 cut(s)	84, 251
PpsI	GAGTC	2 cut(s)	233, 677
PpuMI	RGGWCCY	1 cut(s)	269
Psp5II	RGGWCCY	1 cut(s)	269
PspN4I	GGNNCC	3 cut(s)	10, 82, 249
PspPI	GGNCC	2 cut(s)	8, 269
PspPPI	RGGWCCY	1 cut(s)	269
PstI	CTGCAG	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	38
RsaI	GTAC	2 cut(s)	201, 279
RsaNI	GTAC	2 cut(s)	200, 278
SalI	GTCGAC	1 cut(s)	170
SapI	GCTCTTC	1 cut(s)	324
SaqAI	TTAA	1 cut(s)	621
SatI	GCNGC	2 cut(s)	17, 195
Sau3AI	GATC	5 cut(s)	24, 38, 312, 505, 694
Sau96I	GGNCC	2 cut(s)	8, 269
SchI	GAGTC	2 cut(s)	233, 677
SetI	ASST	7 cut(s)	62, 99, 208, 274, 426, 444, 477
SfaNI	GCATC	3 cut(s)	181, 451, 646
SfcI	CTRYAG	1 cut(s)	195
SfoI	GGCGCC	2 cut(s)	82, 249
SinI	GGWCC	2 cut(s)	8, 269
SmlI	CTYRAG	1 cut(s)	415
SmoI	CTYRAG	1 cut(s)	415
Sse9I	AATT	2 cut(s)	671, 727
SsiI	CCGC	5 cut(s)	12, 16, 430, 599, 629
SspDI	GGCGCC	2 cut(s)	80, 247
SspMI	CTAG	2 cut(s)	266, 494
StyI	CCWWGG	2 cut(s)	67, 186
TaaI	ACNGT	2 cut(s)	547, 724
TaqI	TCGA	1 cut(s)	171
TasI	AATT	2 cut(s)	671, 727
TatI	WGTACW	1 cut(s)	199
TauI	GCSGC	1 cut(s)	19
TfiI	GAWTC	2 cut(s)	351, 565
Tru1I	TTAA	1 cut(s)	621
Tru9I	TTAA	1 cut(s)	621
TscAI	CASTG	2 cut(s)	381, 656
TseI	GCWGC	1 cut(s)	194
TspDTI	ATGAA	3 cut(s)	311, 320, 557
TspRI	CASTG	2 cut(s)	381, 656
VpaK11BI	GGWCC	2 cut(s)	8, 269
XapI	RAATTY	2 cut(s)	671, 727
XcmI	CCANNNNNNNNNTGG	1 cut(s)	648
XmiI	GTMKAC	2 cut(s)	99, 171
XspI	CTAG	2 cut(s)	266, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.