Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001330

Physical Location & Seq

Genomic Coordinates Forward (+)

26054150 .. 26056981

Gene Structure 2832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G277200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGTGGGGCCATTAAGACCTCAGTTTGTGCTGTTTGGTTCGTCCATCGTCCAGTTCAGTTGCAGCAATGGAGGCTGGGGTGCCATTCTTGCGGACTTGTATTCTCGTAAGGCGGACGTACTGCTGCGAGGATATGCCGGCTGGAACTCGAGGCGTGCTCTTCAGGTTCTAGAGCAAGTTTTTCCCAAGGATGCAGCAATTCAGCCATCTTTGGTAATAGTTTATTTCGGTGGCAATGATTCAATGCTGCCTCATTCATCAGGCTTAGGCCCTCATGTACCACTTCCTGAATATGCAGAAAACATGAGGAAGATTGGTAAATATTTAAAGAGCCTTTCAGAAAATATTCGCATTATCTTTCTCACTGCTCCTCCTGTCAATGAGAAACAAATTCTTGAAAATTTAAGCGACATAATTCCCAAGCGGAATCGAACAAACGAGTCCTGCAAAATTTACTCAGATGCTTGTTTAGAGGTCTGCCGAGAGTTAGATGTCAAGGCTGTTGATCTGTGGACTTCAATTCAGAAGAGAAAAGACTGGTCAACTGCTTGCTTTACGGATGGAATCCATTTTTCAGCTGCGGCCAGCAAGATCGTGGCGGAGGAGATACTGAAGGTCCTTAGAGAAGCAGACTGGGAACCCAGCCTTCACTGGAAGTCATTGCCAACAGAATTTGCAGAGAATTCGCCTTATGACCCTCCCTGTGGTGATGGAACAACTTTGAACCTTGCTGATCACAGCGTTGCTCAAGCACTAACCCATTGGGGACTTAGCGACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL Lipase_GDSL_2

Protein Analysis

261

Amino Acids

28.87

Weight (kDa)

5.89

Isoelectric Point (pI)

45.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11210
fragaria_vesca	FvH4_4g09350 FvH4_6g11460 FvH4_6g11470 FvH4_6g17731 FvH4_7g24410 FvH4_7g24410 FvH4_7g24410
malus_domestica	MD01G1152500.v1.1 MD04G1152200.v1.1 MD04G1152600.v1.1 MD07G1221600.v1.1
prunus_persica	Prupe.2G249500_v2.0.a1 Prupe.2G249500_v2.0.a1 Prupe.6G277200_v2.0.a1 Prupe.6G277200_v2.0.a1
pyrus_communis	pycom01g17020 pycom04g13820 pycom04g13830 pycom07g20000
rosa_chinensis	RchiOBHm_Chr1g0370111 RchiOBHm_Chr3g0463151 RchiOBHm_Chr3g0463161 RchiOBHm_Chr4g0412941
rosa_laevigata	RLG00000024807 RLG00000024809 RLG00000027073
rosa_multiflora	Rmu_sc0008124.1_g000006 Rmu_sc0011509.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286810 Rroxscaffold_6G00416920 Rroxscaffold_6G00416930
rosa_rugosa	Rorug01G0354100 Rorug01G0354200 Rorug03G0061800 Rorug03G0061800 Rorug03G0061800 Rorug03G0061800
rosa_samantha	Rh1AG362700 Rh1BG325900 Rh1CG339200 Rh3AG120000 Rh3AG120100 Rh3BG124400 Rh3BG124500 Rh3CG126400 Rh3CG126500 Rh3DG125400 Rh3DG125500 Rh4AG176700 Rh4CG187700
rosa_wichuraiana	Rw1G031920 Rw3G010150 Rw3G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	80
AciI	CCGC	5 cut(s)	92, 113, 424, 581, 599
AcoI	YGGCCR	1 cut(s)	582
AcsI	RAATTY	5 cut(s)	390, 400, 450, 671, 682
AcuI	CTGAAG	2 cut(s)	146, 632
AfaI	GTAC	2 cut(s)	120, 279
AfiI	CCNNNNNNNGG	1 cut(s)	704
AgsI	TTSAA	4 cut(s)	243, 398, 519, 724
AluBI	AGCT	1 cut(s)	578
AluI	AGCT	1 cut(s)	578
Alw21I	GWGCWC	1 cut(s)	160
Ama87I	CYCGRG	1 cut(s)	148
AoxI	GGCC	3 cut(s)	8, 268, 582
ApeKI	GCWGC	5 cut(s)	63, 124, 194, 247, 578
ApoI	RAATTY	5 cut(s)	390, 400, 450, 671, 682
Asp700I	GAANNNNTTC	1 cut(s)	345
AspS9I	GGNCC	3 cut(s)	8, 269, 616
AsuHPI	GGTGA	1 cut(s)	719
AvaI	CYCGRG	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	616
BanI	GGYRCC	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	160
BbvI	GCAGC	5 cut(s)	75, 111, 206, 234, 565
BccI	CCATC	4 cut(s)	53, 214, 554, 704
BcgI	CGANNNNNNTGC	2 cut(s)	666, 700
BclI	TGATCA	1 cut(s)	733
BfaI	CTAG	1 cut(s)	170
BisI	GCNGC	6 cut(s)	64, 125, 195, 248, 579, 582
BlsI	GCNGC	6 cut(s)	65, 126, 196, 249, 580, 583
Bme18I	GGWCC	1 cut(s)	616
BmeT110I	CYCGRG	1 cut(s)	148
BmgT120I	GGNCC	3 cut(s)	8, 269, 616
BmiI	GGNNCC	3 cut(s)	9, 82, 639
BmrI	ACTGGG	1 cut(s)	643
BmsI	GCATC	2 cut(s)	181, 451
BmuI	ACTGGG	1 cut(s)	643
BplI	GAGNNNNNCTC	2 cut(s)	142, 174
Bpu10I	CCTNAGC	1 cut(s)	265
BpuEI	CTTGAG	1 cut(s)	732
BsaJI	CCNNGG	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	355, 385
Bsc4I	CCNNNNNNNGG	1 cut(s)	704
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	4 cut(s)	52, 542, 638, 656
Bse3DI	GCAATG	3 cut(s)	73, 241, 659
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	2 cut(s)	196, 565
BseLI	CCNNNNNNNGG	1 cut(s)	704
BseMI	GCAATG	3 cut(s)	73, 241, 659
BseMII	CTCAG	2 cut(s)	35, 471
BseNI	ACTGG	4 cut(s)	52, 542, 638, 656
BseRI	GAGGAG	2 cut(s)	360, 617
BseXI	GCAGC	5 cut(s)	75, 111, 206, 234, 565
BseYI	CCCAGC	2 cut(s)	75, 641
BshFI	GGCC	3 cut(s)	10, 270, 584
BshNI	GGYRCC	1 cut(s)	80
BsiHKAI	GWGCWC	1 cut(s)	160
BsiHKCI	CYCGRG	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	138
BslI	CCNNNNNNNGG	1 cut(s)	704
BsnI	GGCC	3 cut(s)	10, 270, 584
BsoBI	CYCGRG	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp143I	GATC	3 cut(s)	505, 591, 733
BspACI	CCGC	5 cut(s)	92, 113, 424, 581, 599
BspANI	GGCC	3 cut(s)	10, 270, 584
BspCNI	CTCAG	2 cut(s)	34, 470
BspLI	GGNNCC	3 cut(s)	9, 82, 639
BspQI	GCTCTTC	1 cut(s)	165
BspT107I	GGYRCC	1 cut(s)	80
BsrDI	GCAATG	3 cut(s)	73, 241, 659
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	4 cut(s)	52, 542, 638, 656
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	3 cut(s)	505, 591, 733
BssT1I	CCWWGG	1 cut(s)	186
Bst6I	CTCTTC	2 cut(s)	165, 521
BstC8I	GCNNGC	4 cut(s)	139, 156, 550, 586
BstDEI	CTNAG	5 cut(s)	21, 265, 457, 620, 770
BstF5I	GGATG	2 cut(s)	196, 565
BstKTI	GATC	3 cut(s)	508, 594, 736
BstMBI	GATC	3 cut(s)	505, 591, 733
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 89
BstV1I	GCAGC	5 cut(s)	75, 111, 206, 234, 565
BsuRI	GGCC	3 cut(s)	10, 270, 584
BtsCI	GGATG	2 cut(s)	196, 565
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	2 cut(s)	363, 649
Cac8I	GCNNGC	4 cut(s)	139, 156, 550, 586
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	3 cut(s)	8, 269, 616
Csp6I	GTAC	2 cut(s)	119, 278
CviAII	CATG	2 cut(s)	275, 304
CviQI	GTAC	2 cut(s)	119, 278
DdeI	CTNAG	5 cut(s)	21, 265, 457, 620, 770
DpnI	GATC	3 cut(s)	507, 593, 735
DpnII	GATC	3 cut(s)	505, 591, 733
DraI	TTTAAA	1 cut(s)	327
EaeI	YGGCCR	1 cut(s)	582
Eam1104I	CTCTTC	2 cut(s)	165, 521
EarI	CTCTTC	2 cut(s)	165, 521
EciI	GGCGGA	2 cut(s)	128, 614
Eco130I	CCWWGG	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	616
Eco57I	CTGAAG	2 cut(s)	146, 632
Eco88I	CYCGRG	1 cut(s)	148
EcoO109I	RGGNCCY	2 cut(s)	269, 616
EcoRI	GAATTC	1 cut(s)	682
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	2 cut(s)	278, 307
FaiI	YATR	6 cut(s)	135, 276, 294, 305, 413, 693
FatI	CATG	2 cut(s)	274, 303
FbaI	TGATCA	1 cut(s)	733
Fnu4HI	GCNGC	6 cut(s)	64, 125, 195, 248, 579, 582
FokI	GGATG	2 cut(s)	203, 572
Fsp4HI	GCNGC	6 cut(s)	64, 125, 195, 248, 579, 582
FspBI	CTAG	1 cut(s)	170
GluI	GCNGC	6 cut(s)	64, 125, 195, 248, 579, 582
GsaI	CCCAGC	2 cut(s)	79, 645
HaeIII	GGCC	3 cut(s)	10, 270, 584
HapII	CCGG	1 cut(s)	138
Hin1II	CATG	2 cut(s)	278, 307
HincII	GTYRAC	1 cut(s)	543
HindII	GTYRAC	1 cut(s)	543
HinfI	GANTC	4 cut(s)	239, 427, 440, 564
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	1 cut(s)	719
Hpy166II	GTNNAC	2 cut(s)	513, 543
Hpy188I	TCNGA	3 cut(s)	340, 460, 525
Hpy188III	TCNNGA	3 cut(s)	170, 287, 395
Hpy8I	GTNNAC	2 cut(s)	513, 543
HpyAV	CCTTC	2 cut(s)	607, 656
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	5 cut(s)	63, 194, 296, 447, 677
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 89
HpyF3I	CTNAG	5 cut(s)	21, 265, 457, 620, 770
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	2 cut(s)	278, 307
KroI	GCCGGC	1 cut(s)	137
KroNI	GCCGGC	1 cut(s)	139
Ksp22I	TGATCA	1 cut(s)	733
Kzo9I	GATC	3 cut(s)	505, 591, 733
LguI	GCTCTTC	1 cut(s)	165
LmnI	GCTCC	1 cut(s)	373
Lsp1109I	GCAGC	5 cut(s)	75, 111, 206, 234, 565
LweI	GCATC	2 cut(s)	181, 451
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	1 cut(s)	117
MalI	GATC	3 cut(s)	507, 593, 735
MboI	GATC	3 cut(s)	505, 591, 733
MboII	GAAGA	3 cut(s)	152, 322, 538
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	9 cut(s)	198, 390, 400, 414, 450, 519, 671, 682, 778
MlyI	GAGTC	1 cut(s)	449
MroNI	GCCGGC	1 cut(s)	137
MroXI	GAANNNNTTC	1 cut(s)	345
MseI	TTAA	4 cut(s)	14, 326, 404, 781
MspA1I	CMGCKG	1 cut(s)	578
MspI	CCGG	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	72, 89
NaeI	GCCGGC	1 cut(s)	139
NdeII	GATC	3 cut(s)	505, 591, 733
NgoMIV	GCCGGC	1 cut(s)	137
NlaIII	CATG	2 cut(s)	278, 307
NlaIV	GGNNCC	3 cut(s)	9, 82, 639
NmeAIII	GCCGAG	1 cut(s)	506
PaeR7I	CTCGAG	1 cut(s)	148
PciSI	GCTCTTC	1 cut(s)	165
PdiI	GCCGGC	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	3 cut(s)	239, 427, 564
PkrI	GCNGC	6 cut(s)	65, 126, 196, 249, 580, 583
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
PpuMI	RGGWCCY	1 cut(s)	616
Psp5II	RGGWCCY	1 cut(s)	616
PspFI	CCCAGC	2 cut(s)	75, 641
PspN4I	GGNNCC	3 cut(s)	9, 82, 639
PspPI	GGNCC	3 cut(s)	8, 269, 616
PspPPI	RGGWCCY	1 cut(s)	616
PspXI	VCTCGAGB	1 cut(s)	148
PvuII	CAGCTG	1 cut(s)	578
RsaI	GTAC	2 cut(s)	120, 279
RsaNI	GTAC	2 cut(s)	119, 278
SapI	GCTCTTC	1 cut(s)	165
SaqAI	TTAA	4 cut(s)	14, 326, 404, 781
SatI	GCNGC	6 cut(s)	64, 125, 195, 248, 579, 582
Sau3AI	GATC	3 cut(s)	505, 591, 733
Sau96I	GGNCC	3 cut(s)	8, 269, 616
SchI	GAGTC	1 cut(s)	449
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	7 cut(s)	22, 120, 168, 477, 580, 618, 729
SfaNI	GCATC	2 cut(s)	181, 451
Sfr274I	CTCGAG	1 cut(s)	148
SinI	GGWCC	1 cut(s)	616
SlaI	CTCGAG	1 cut(s)	148
SmlI	CTYRAG	2 cut(s)	148, 747
SmoI	CTYRAG	2 cut(s)	148, 747
Sse9I	AATT	9 cut(s)	198, 390, 400, 414, 450, 519, 671, 682, 778
SsiI	CCGC	5 cut(s)	92, 113, 424, 581, 599
SspI	AATATT	2 cut(s)	323, 346
SspMI	CTAG	1 cut(s)	170
StyI	CCWWGG	1 cut(s)	186
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	2 cut(s)	149, 430
TasI	AATT	9 cut(s)	198, 390, 400, 414, 450, 519, 671, 682, 778
TauI	GCSGC	1 cut(s)	584
TfiI	GAWTC	3 cut(s)	239, 427, 564
Tru1I	TTAA	4 cut(s)	14, 326, 404, 781
Tru9I	TTAA	4 cut(s)	14, 326, 404, 781
TscAI	CASTG	2 cut(s)	370, 656
TseI	GCWGC	5 cut(s)	63, 124, 194, 247, 578
TspDTI	ATGAA	1 cut(s)	246
TspGWI	ACGGA	1 cut(s)	572
TspRI	CASTG	2 cut(s)	370, 656
VpaK11BI	GGWCC	1 cut(s)	616
XapI	RAATTY	5 cut(s)	390, 400, 450, 671, 682
XbaI	TCTAGA	1 cut(s)	169
XcmI	CCANNNNNNNNNTGG	1 cut(s)	592
XhoI	CTCGAG	1 cut(s)	148
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.