Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0001330

Physical Location & Seq

Genomic Coordinates Forward (+)

16427993 .. 16430938

Gene Structure 2946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g17020.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGTTTGTGTGGTCACGGTTAAGCCATATCAATATTTTATATTCTTATTACTTTTTCTGCAAGAGTATAGAAACGGAGGCAGACAATCCACCTCCTTACATAACATCATTTGCTTGCACCCAGCTGCCCACTAAACCAAACTATTTCAGAGTAAACTCCGAGGTCGTCGTAGTCCTCCTTCTGCTCTCTACTCTTCCGACCAATTCCTCGTATTCTTCCTCCTCTTCTTTAGAGAGAGGGAGAGAGATGGTCGGACCGGCAAGGCCCTTGTTTGTTCTGTTCGGATCCTCCATTGTTCAGATGAGCTACGACGTCGGCGGTTGGGGCGCAATTCTTGCCGATATCTACTCTCGTAGAGCAGACATACTGGTGCGTGGTTACTTTGGTTGGAATTCACGGCGTGCTGTAAATGTCCTTGATCAAGTCTTTCCCAAGGATGCTGCTGTTAAACCTTCTTTGGTGATAGTTTATTTTGGTGGTAATGATTCTATGGGGCCTCATCCATCCGGCCTTGGCCCTCATGTCCCGCTTCCTGAATACGTCGAGAACATGAGAAAGATTGCAATTCATCTGAAGAGCCTTTCAGATTCAACGCGGATCATCTTTCTTAGTTGTCCTCCAGTGAATGAGGCCGTAATCAATGGAGGGTCAAGCGGCGGGATTTTCAGCGAGATTATAAGAACCAACGAGTTATGCCAACAGTATTCAGAAGCTTGTATAAAGCTGTGCCAGGAAATCAATGTCCCATTTGTTGATCTTTTCACTGCATGTCAGAGAAAAGATGACTGGAGGAATGCTTGTTTTACGGATGGGATTCATTTTTCAGCTGAAGGGAGCAAAGTAGTGGTGGAAGAGATACTCAAGGTACTGAGAGAAGCTGACTGGAAGCCAAGTTTACACTGGAAATCGATGCCGATAGAATTTTCCGAGGATTCACCGTATGATCTCGTTGCTGCTGACGGAAAGACAACGTTAAATCCTTCCGGCTGGACTTATTACAGGGAGATTCAGTGGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0048046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL Lipase_GDSL_2

Protein Analysis

340

Amino Acids

38.06

Weight (kDa)

5.6

Isoelectric Point (pI)

52.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11210
fragaria_vesca	FvH4_4g09350 FvH4_6g11460 FvH4_6g11470 FvH4_6g17731 FvH4_7g24410 FvH4_7g24410 FvH4_7g24410
malus_domestica	MD01G1152500.v1.1 MD04G1152200.v1.1 MD04G1152600.v1.1 MD07G1221600.v1.1
prunus_persica	Prupe.2G249500_v2.0.a1 Prupe.2G249500_v2.0.a1 Prupe.6G277200_v2.0.a1 Prupe.6G277200_v2.0.a1
pyrus_communis	pycom01g17020 pycom04g13820 pycom04g13830 pycom07g20000
rosa_chinensis	RchiOBHm_Chr1g0370111 RchiOBHm_Chr3g0463151 RchiOBHm_Chr3g0463161 RchiOBHm_Chr4g0412941
rosa_laevigata	RLG00000024807 RLG00000024809 RLG00000027073
rosa_multiflora	Rmu_sc0008124.1_g000006 Rmu_sc0011509.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286810 Rroxscaffold_6G00416920 Rroxscaffold_6G00416930
rosa_rugosa	Rorug01G0354100 Rorug01G0354200 Rorug03G0061800 Rorug03G0061800 Rorug03G0061800 Rorug03G0061800
rosa_samantha	Rh1AG362700 Rh1BG325900 Rh1CG339200 Rh3AG120000 Rh3AG120100 Rh3BG124400 Rh3BG124500 Rh3CG126400 Rh3CG126500 Rh3DG125400 Rh3DG125500 Rh4AG176700 Rh4CG187700
rosa_wichuraiana	Rw1G031920 Rw3G010150 Rw3G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	677
AatII	GACGTC	1 cut(s)	315
AccII	CGCG	1 cut(s)	595
AciI	CCGC	5 cut(s)	318, 527, 595, 654, 657
AclI	AACGTT	1 cut(s)	971
AclWI	GGATC	3 cut(s)	279, 292, 605
AcsI	RAATTY	2 cut(s)	391, 920
AcuI	CTGAAG	2 cut(s)	593, 849
AcyI	GRCGYC	1 cut(s)	312
AdeI	CACNNNGTG	1 cut(s)	401
AfaI	GTAC	1 cut(s)	867
AgsI	TTSAA	1 cut(s)	591
AjnI	CCWGG	1 cut(s)	729
AluBI	AGCT	6 cut(s)	124, 306, 713, 724, 827, 878
AluI	AGCT	6 cut(s)	124, 306, 713, 724, 827, 878
AlwI	GGATC	3 cut(s)	279, 292, 605
AoxI	GGCC	5 cut(s)	263, 494, 508, 514, 630
ApeKI	GCWGC	3 cut(s)	124, 440, 953
ApoI	RAATTY	2 cut(s)	391, 920
AspLEI	GCGC	1 cut(s)	329
AspS9I	GGNCC	4 cut(s)	254, 264, 494, 515
AsuHPI	GGTGA	2 cut(s)	472, 927
AvaII	GGWCC	1 cut(s)	254
BamHI	GGATCC	1 cut(s)	284
BarI	GAAGNNNNNNTAC	2 cut(s)	162, 194
BbvI	GCAGC	3 cut(s)	111, 427, 940
BccI	CCATC	3 cut(s)	241, 511, 803
BceAI	ACGGC	2 cut(s)	413, 617
BciT130I	CCWGG	1 cut(s)	731
BclI	TGATCA	1 cut(s)	418
BfaI	CTAG	1 cut(s)	1018
BisI	GCNGC	4 cut(s)	125, 441, 655, 954
BlsI	GCNGC	4 cut(s)	126, 442, 656, 955
Bme1390I	CCNGG	1 cut(s)	731
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	4 cut(s)	254, 264, 494, 515
BmiI	GGNNCC	2 cut(s)	286, 495
BmrFI	CCNGG	1 cut(s)	731
BmsI	GCATC	2 cut(s)	427, 900
BpmI	CTGGAG	2 cut(s)	603, 808
BpuEI	CTTGAG	1 cut(s)	845
Bsa29I	ATCGAT	1 cut(s)	908
BsaHI	GRCGYC	1 cut(s)	312
BsaJI	CCNNGG	4 cut(s)	159, 432, 511, 927
BsaXI	ACNNNNNCTCC	1 cut(s)	995
Bse118I	RCCGGY	1 cut(s)	256
Bse1I	ACTGG	5 cut(s)	372, 620, 791, 887, 905
BseBI	CCWGG	1 cut(s)	731
BseCI	ATCGAT	1 cut(s)	908
BseDI	CCNNGG	4 cut(s)	159, 432, 511, 927
BseGI	GGATG	4 cut(s)	442, 499, 503, 814
BseMII	CTCAG	1 cut(s)	860
BseNI	ACTGG	5 cut(s)	372, 620, 791, 887, 905
BseRI	GAGGAG	1 cut(s)	211
BseXI	GCAGC	3 cut(s)	111, 427, 940
BseYI	CCCAGC	1 cut(s)	120
Bsh1236I	CGCG	1 cut(s)	595
BshFI	GGCC	5 cut(s)	265, 496, 510, 516, 632
BshVI	ATCGAT	1 cut(s)	908
BsiSI	CCGG	3 cut(s)	257, 507, 984
BslFI	GGGAC	2 cut(s)	509, 728
BsmFI	GGGAC	2 cut(s)	509, 728
BsmI	GAATGC	1 cut(s)	799
BsnI	GGCC	5 cut(s)	265, 496, 510, 516, 632
Bsp143I	GATC	5 cut(s)	284, 418, 597, 754, 943
BspACI	CCGC	5 cut(s)	318, 527, 595, 654, 657
BspANI	GGCC	5 cut(s)	265, 496, 510, 516, 632
BspCNI	CTCAG	1 cut(s)	861
BspDI	ATCGAT	1 cut(s)	908
BspFNI	CGCG	1 cut(s)	595
BspLI	GGNNCC	2 cut(s)	286, 495
BspPI	GGATC	3 cut(s)	279, 292, 605
BspQI	GCTCTTC	1 cut(s)	569
BsrFI	RCCGGY	1 cut(s)	256
BsrI	ACTGG	5 cut(s)	372, 620, 791, 887, 905
BssAI	RCCGGY	1 cut(s)	256
BssECI	CCNNGG	4 cut(s)	159, 432, 511, 927
BssMI	GATC	5 cut(s)	284, 418, 597, 754, 943
BssNI	GRCGYC	1 cut(s)	312
BssT1I	CCWWGG	2 cut(s)	432, 511
Bst2UI	CCWGG	1 cut(s)	731
Bst4CI	ACNGT	3 cut(s)	18, 702, 939
Bst6I	CTCTTC	4 cut(s)	198, 229, 569, 846
BstACI	GRCGYC	1 cut(s)	312
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstC8I	GCNNGC	2 cut(s)	115, 402
BstDEI	CTNAG	2 cut(s)	608, 869
BstF5I	GGATG	4 cut(s)	442, 499, 503, 814
BstFNI	CGCG	1 cut(s)	595
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	5 cut(s)	287, 421, 600, 757, 946
BstMBI	GATC	5 cut(s)	284, 418, 597, 754, 943
BstMWI	GCNNNNNNNGC	2 cut(s)	324, 335
BstNI	CCWGG	1 cut(s)	731
BstNSI	RCATGY	1 cut(s)	771
BstSCI	CCNGG	1 cut(s)	729
BstUI	CGCG	1 cut(s)	595
BstV1I	GCAGC	3 cut(s)	111, 427, 940
BstX2I	RGATCY	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	284
Bsu15I	ATCGAT	1 cut(s)	908
BsuRI	GGCC	5 cut(s)	265, 496, 510, 516, 632
BsuTUI	ATCGAT	1 cut(s)	908
BtsCI	GGATG	4 cut(s)	442, 499, 503, 814
BtsI	GCAGTG	1 cut(s)	762
BtsIMutI	CAGTG	4 cut(s)	627, 762, 898, 1016
Cac8I	GCNNGC	2 cut(s)	115, 402
CfoI	GCGC	1 cut(s)	329
Cfr10I	RCCGGY	1 cut(s)	256
Cfr13I	GGNCC	4 cut(s)	254, 264, 494, 515
ClaI	ATCGAT	1 cut(s)	908
CpoI	CGGWCCG	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	866
CspI	CGGWCCG	1 cut(s)	254
CviAII	CATG	3 cut(s)	521, 550, 768
CviQI	GTAC	1 cut(s)	866
DdeI	CTNAG	2 cut(s)	608, 869
DpnI	GATC	5 cut(s)	286, 420, 599, 756, 945
DpnII	GATC	5 cut(s)	284, 418, 597, 754, 943
DraIII	CACNNNGTG	1 cut(s)	401
Eam1104I	CTCTTC	4 cut(s)	198, 229, 569, 846
EarI	CTCTTC	4 cut(s)	198, 229, 569, 846
Eco130I	CCWWGG	2 cut(s)	432, 511
Eco32I	GATATC	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	254
Eco57I	CTGAAG	2 cut(s)	593, 849
EcoO109I	RGGNCCY	2 cut(s)	264, 494
EcoRI	GAATTC	1 cut(s)	391
EcoRII	CCWGG	1 cut(s)	729
EcoRV	GATATC	1 cut(s)	343
EcoT14I	CCWWGG	2 cut(s)	432, 511
ErhI	CCWWGG	2 cut(s)	432, 511
FaeI	CATG	3 cut(s)	524, 553, 771
FaqI	GGGAC	2 cut(s)	509, 728
FatI	CATG	3 cut(s)	520, 549, 767
FauI	CCCGC	2 cut(s)	534, 650
FbaI	TGATCA	1 cut(s)	418
Fnu4HI	GCNGC	4 cut(s)	125, 441, 655, 954
FokI	GGATG	4 cut(s)	449, 486, 490, 821
Fsp4HI	GCNGC	4 cut(s)	125, 441, 655, 954
FspBI	CTAG	1 cut(s)	1018
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	4 cut(s)	125, 441, 655, 954
GsaI	CCCAGC	1 cut(s)	124
GsuI	CTGGAG	2 cut(s)	603, 808
HaeIII	GGCC	5 cut(s)	265, 496, 510, 516, 632
HapII	CCGG	3 cut(s)	257, 507, 984
HhaI	GCGC	1 cut(s)	329
Hin1I	GRCGYC	1 cut(s)	312
Hin1II	CATG	3 cut(s)	524, 553, 771
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HindIII	AAGCTT	1 cut(s)	711
HinfI	GANTC	5 cut(s)	485, 587, 814, 932, 1006
HpaII	CCGG	3 cut(s)	257, 507, 984
HphI	GGTGA	2 cut(s)	472, 927
Hpy166II	GTNNAC	2 cut(s)	154, 896
Hpy188III	TCNNGA	2 cut(s)	533, 544
Hpy8I	GTNNAC	2 cut(s)	154, 896
Hpy99I	CGWCG	4 cut(s)	170, 314, 317, 545
HpyAV	CCTTC	4 cut(s)	188, 462, 824, 990
HpyCH4III	ACNGT	3 cut(s)	18, 702, 939
HpyCH4IV	ACGT	3 cut(s)	312, 540, 971
HpyCH4V	TGCA	4 cut(s)	60, 117, 563, 767
HpyF10VI	GCNNNNNNNGC	2 cut(s)	324, 335
HpyF3I	CTNAG	2 cut(s)	608, 869
HpySE526I	ACGT	3 cut(s)	312, 540, 971
Hsp92I	GRCGYC	1 cut(s)	312
Hsp92II	CATG	3 cut(s)	524, 553, 771
HspAI	GCGC	1 cut(s)	327
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	5 cut(s)	284, 418, 597, 754, 943
LguI	GCTCTTC	1 cut(s)	569
LmnI	GCTCC	1 cut(s)	834
Lsp1109I	GCAGC	3 cut(s)	111, 427, 940
LweI	GCATC	2 cut(s)	427, 900
MaeI	CTAG	1 cut(s)	1018
MaeII	ACGT	3 cut(s)	312, 540, 971
MaeIII	GTNAC	2 cut(s)	12, 377
MalI	GATC	5 cut(s)	286, 420, 599, 756, 945
MboI	GATC	5 cut(s)	284, 418, 597, 754, 943
MboII	GAAGA	5 cut(s)	185, 207, 216, 586, 863
MflI	RGATCY	1 cut(s)	284
MluCI	AATT	5 cut(s)	202, 330, 391, 564, 920
MmeI	TCCRAC	3 cut(s)	221, 232, 368
MseI	TTAA	3 cut(s)	20, 447, 974
MslI	CAYNNNNRTG	1 cut(s)	368
MspA1I	CMGCKG	2 cut(s)	124, 827
MspI	CCGG	3 cut(s)	257, 507, 984
MspR9I	CCNGG	1 cut(s)	731
Mva1269I	GAATGC	1 cut(s)	799
MvaI	CCWGG	1 cut(s)	731
MvnI	CGCG	1 cut(s)	595
MwoI	GCNNNNNNNGC	2 cut(s)	324, 335
NdeII	GATC	5 cut(s)	284, 418, 597, 754, 943
NlaIII	CATG	3 cut(s)	524, 553, 771
NlaIV	GGNNCC	2 cut(s)	286, 495
NmuCI	GTSAC	1 cut(s)	12
NspI	RCATGY	1 cut(s)	771
PciSI	GCTCTTC	1 cut(s)	569
PctI	GAATGC	1 cut(s)	799
PfeI	GAWTC	5 cut(s)	485, 587, 814, 932, 1006
PkrI	GCNGC	4 cut(s)	126, 442, 656, 955
PsiI	TTATAA	1 cut(s)	677
Psp1406I	AACGTT	1 cut(s)	971
Psp6I	CCWGG	1 cut(s)	729
PspFI	CCCAGC	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	729
PspN4I	GGNNCC	2 cut(s)	286, 495
PspPI	GGNCC	4 cut(s)	254, 264, 494, 515
PsuI	RGATCY	1 cut(s)	284
PvuII	CAGCTG	2 cut(s)	124, 827
RsaI	GTAC	1 cut(s)	867
RsaNI	GTAC	1 cut(s)	866
RseI	CAYNNNNRTG	1 cut(s)	368
Rsr2I	CGGWCCG	1 cut(s)	254
RsrII	CGGWCCG	1 cut(s)	254
SapI	GCTCTTC	1 cut(s)	569
SaqAI	TTAA	3 cut(s)	20, 447, 974
SatI	GCNGC	4 cut(s)	125, 441, 655, 954
Sau3AI	GATC	5 cut(s)	284, 418, 597, 754, 943
Sau96I	GGNCC	4 cut(s)	254, 264, 494, 515
ScrFI	CCNGG	1 cut(s)	731
SfaNI	GCATC	2 cut(s)	427, 900
SinI	GGWCC	1 cut(s)	254
SmiMI	CAYNNNNRTG	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	860
SmoI	CTYRAG	1 cut(s)	860
Sse9I	AATT	5 cut(s)	202, 330, 391, 564, 920
SsiI	CCGC	5 cut(s)	318, 527, 595, 654, 657
SspI	AATATT	1 cut(s)	34
SspMI	CTAG	1 cut(s)	1018
StyD4I	CCNGG	1 cut(s)	729
StyI	CCWWGG	2 cut(s)	432, 511
TaaI	ACNGT	3 cut(s)	18, 702, 939
TaiI	ACGT	3 cut(s)	315, 543, 974
TaqI	TCGA	2 cut(s)	543, 908
TasI	AATT	5 cut(s)	202, 330, 391, 564, 920
TauI	GCSGC	1 cut(s)	657
TfiI	GAWTC	5 cut(s)	485, 587, 814, 932, 1006
Tru1I	TTAA	3 cut(s)	20, 447, 974
Tru9I	TTAA	3 cut(s)	20, 447, 974
TscAI	CASTG	4 cut(s)	627, 769, 905, 1016
TseFI	GTSAC	1 cut(s)	12
TseI	GCWGC	3 cut(s)	124, 440, 953
Tsp45I	GTSAC	1 cut(s)	12
TspDTI	ATGAA	2 cut(s)	557, 806
TspGWI	ACGGA	3 cut(s)	89, 821, 975
TspRI	CASTG	4 cut(s)	627, 769, 905, 1016
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	2 cut(s)	391, 920
XceI	RCATGY	1 cut(s)	771
XcmI	CCANNNNNNNNNTGG	1 cut(s)	897
XspI	CTAG	1 cut(s)	1018
ZraI	GACGTC	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.