Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001330

Physical Location & Seq

Genomic Coordinates Forward (+)

24134955 .. 24136605

Gene Structure 1651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1152600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAGAACTGCTAAAGATGAAATGTTTATAAAGTTTCATGCGGACGTACTGCTGCGAGGATATGCTGGTTGGAACTCGAGGCGTGCTCTGCAAGTTTTGGACCAAGTTTTTCCTAAGGATGCTACAACTCAGCCGTCTTTGGTGATAGTTTATTTCGGTGGTAACGATTCAATGCATCCTCATCCGTCGGGCCTAGGTGCTCATGTACCACTTAAAGAATATGTAGAAAATATGCGGAAGATTGCTAAACATTTAAAGAGCCTTTCAGAAAAAACTCGGGTCATCTTTCTTACTGCTCCTCCTGTCAACGAGGAACAAATACGTGAAAATTTGAGTGACCAAACTTCGCCGCAGAAGCGAACAAATGAGTCCTGCAAAATATATTCGGATGCTTGTTTAGAGGTGTGCCGGGAGTTTGATGTCAAGGGTGTTGATTTGTGGACTTCAATTCAGAAAAGAAAAGACTGGTCTACTACTTGCTTTAGGGATGGAATCCATTTTTCATCCGAAGGGAGCAAGATTGTGGCGGAGGAGATACTGAAGGTTCTTAGGGAAGCAGACTGGGAGCCCTGCCTACACTGGAAGTCGTTGCCAACAGAATTTTCGGAAGATTCACCTTATGACCCGCCCGGTGCTGATGGAACCACAACTGTGAACATTGCTGAGCAGAGCGTTGCGGCGAGTCCGATGAAGTGGGGGCTTAGCAATGAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL Lipase_GDSL_2

Protein Analysis

239

Amino Acids

26.91

Weight (kDa)

5.84

Isoelectric Point (pI)

51.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL_2	PF13472	13 - 173	3.6e-19	GDSL-like Lipase/Acylhydrolase family
Lipase_GDSL	PF00657	30 - 179	3e-18	GDSL-like Lipase/Acylhydrolase
DUF459	PF04311	42 - 181	5.4e-08	Protein of unknown function (DUF459)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11210
fragaria_vesca	FvH4_4g09350 FvH4_6g11460 FvH4_6g11470 FvH4_6g17731 FvH4_7g24410 FvH4_7g24410 FvH4_7g24410
malus_domestica	MD01G1152500.v1.1 MD04G1152200.v1.1 MD04G1152600.v1.1 MD07G1221600.v1.1
prunus_persica	Prupe.2G249500_v2.0.a1 Prupe.2G249500_v2.0.a1 Prupe.6G277200_v2.0.a1 Prupe.6G277200_v2.0.a1
pyrus_communis	pycom01g17020 pycom04g13820 pycom04g13830 pycom07g20000
rosa_chinensis	RchiOBHm_Chr1g0370111 RchiOBHm_Chr3g0463151 RchiOBHm_Chr3g0463161 RchiOBHm_Chr4g0412941
rosa_laevigata	RLG00000024807 RLG00000024809 RLG00000027073
rosa_multiflora	Rmu_sc0008124.1_g000006 Rmu_sc0011509.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286810 Rroxscaffold_6G00416920 Rroxscaffold_6G00416930
rosa_rugosa	Rorug01G0354100 Rorug01G0354200 Rorug03G0061800 Rorug03G0061800 Rorug03G0061800 Rorug03G0061800
rosa_samantha	Rh1AG362700 Rh1BG325900 Rh1CG339200 Rh3AG120000 Rh3AG120100 Rh3BG124400 Rh3BG124500 Rh3CG126400 Rh3CG126500 Rh3DG125400 Rh3DG125500 Rh4AG176700 Rh4CG187700
rosa_wichuraiana	Rw1G031920 Rw3G010150 Rw3G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	29
AccI	GTMKAC	1 cut(s)	470
AciI	CCGC	6 cut(s)	41, 235, 350, 527, 626, 677
AcsI	RAATTY	2 cut(s)	328, 599
AcuI	CTGAAG	1 cut(s)	560
AfaI	GTAC	2 cut(s)	48, 207
AgsI	TTSAA	2 cut(s)	171, 447
AjuI	GAANNNNNNNTTGG	2 cut(s)	586, 618
AleI	CACNNNNGTG	1 cut(s)	650
Alw21I	GWGCWC	2 cut(s)	88, 202
Ama87I	CYCGRG	2 cut(s)	76, 276
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	1 cut(s)	52
ApoI	RAATTY	2 cut(s)	328, 599
AspA2I	CCTAGG	1 cut(s)	193
AspS9I	GGNCC	2 cut(s)	100, 190
AsuC2I	CCSGG	2 cut(s)	410, 630
AsuHPI	GGTGA	2 cut(s)	154, 606
AvaI	CYCGRG	2 cut(s)	76, 276
AvaII	GGWCC	1 cut(s)	100
AvrII	CCTAGG	1 cut(s)	193
AxyI	CCTNAGG	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	570
Bbv12I	GWGCWC	2 cut(s)	88, 202
BbvI	GCAGC	1 cut(s)	39
BccI	CCATC	2 cut(s)	482, 632
BceAI	ACGGC	1 cut(s)	118
BcnI	CCSGG	2 cut(s)	410, 630
BfaI	CTAG	1 cut(s)	194
BisI	GCNGC	3 cut(s)	53, 350, 678
BlnI	CCTAGG	1 cut(s)	193
BlpI	GCTNAGC	2 cut(s)	663, 701
BlsI	GCNGC	3 cut(s)	54, 351, 679
Bme1390I	CCNGG	2 cut(s)	410, 630
Bme18I	GGWCC	1 cut(s)	100
BmeT110I	CYCGRG	2 cut(s)	76, 276
BmgT120I	GGNCC	2 cut(s)	100, 190
BmiI	GGNNCC	2 cut(s)	567, 643
BmrFI	CCNGG	2 cut(s)	410, 630
BmrI	ACTGGG	1 cut(s)	571
BmsI	GCATC	3 cut(s)	109, 184, 379
BmuI	ACTGGG	1 cut(s)	571
BplI	GAGNNNNNCTC	2 cut(s)	70, 102
Bpu1102I	GCTNAGC	2 cut(s)	663, 701
BpuMI	CCSGG	2 cut(s)	410, 630
BsaAI	YACGTR	1 cut(s)	323
BsaJI	CCNNGG	1 cut(s)	193
BsaXI	ACNNNNNCTCC	2 cut(s)	283, 313
Bse1I	ACTGG	3 cut(s)	470, 566, 584
Bse21I	CCTNAGG	1 cut(s)	114
Bse3DI	GCAATG	2 cut(s)	657, 712
BseDI	CCNNGG	1 cut(s)	193
BseGI	GGATG	6 cut(s)	124, 175, 181, 394, 493, 503
BseMI	GCAATG	2 cut(s)	657, 712
BseMII	CTCAG	2 cut(s)	143, 654
BseNI	ACTGG	3 cut(s)	470, 566, 584
BseRI	GAGGAG	2 cut(s)	288, 545
BseXI	GCAGC	1 cut(s)	39
BshFI	GGCC	1 cut(s)	192
BsiHKAI	GWGCWC	2 cut(s)	88, 202
BsiHKCI	CYCGRG	2 cut(s)	76, 276
BsiSI	CCGG	2 cut(s)	409, 630
BsnI	GGCC	1 cut(s)	192
BsoBI	CYCGRG	2 cut(s)	76, 276
Bsp1286I	GDGCHC	3 cut(s)	88, 202, 570
Bsp1720I	GCTNAGC	2 cut(s)	663, 701
BspACI	CCGC	6 cut(s)	41, 235, 350, 527, 626, 677
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	2 cut(s)	142, 655
BspLI	GGNNCC	2 cut(s)	567, 643
BsrDI	GCAATG	2 cut(s)	657, 712
BsrI	ACTGG	3 cut(s)	470, 566, 584
BssECI	CCNNGG	1 cut(s)	193
BssT1I	CCWWGG	1 cut(s)	193
Bst4CI	ACNGT	1 cut(s)	652
BstBAI	YACGTR	1 cut(s)	323
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	5 cut(s)	114, 129, 548, 663, 701
BstF5I	GGATG	6 cut(s)	124, 175, 181, 394, 493, 503
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 355
BstSCI	CCNGG	2 cut(s)	408, 628
BstV1I	GCAGC	1 cut(s)	39
Bsu36I	CCTNAGG	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	192
BtsCI	GGATG	6 cut(s)	124, 175, 181, 394, 493, 503
BtsIMutI	CAGTG	1 cut(s)	577
Cac8I	GCNNGC	1 cut(s)	84
Cfr13I	GGNCC	2 cut(s)	100, 190
Csp6I	GTAC	2 cut(s)	47, 206
CviAII	CATG	2 cut(s)	38, 203
CviJI	RGCY	5 cut(s)	133, 192, 261, 568, 700
CviKI_1	RGCY	5 cut(s)	133, 192, 261, 568, 700
CviQI	GTAC	2 cut(s)	47, 206
DdeI	CTNAG	5 cut(s)	114, 129, 548, 663, 701
DraI	TTTAAA	1 cut(s)	255
EciI	GGCGGA	1 cut(s)	542
Eco130I	CCWWGG	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	570
Eco47I	GGWCC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	560
Eco81I	CCTNAGG	1 cut(s)	114
Eco88I	CYCGRG	2 cut(s)	76, 276
EcoT14I	CCWWGG	1 cut(s)	193
EcoT22I	ATGCAT	1 cut(s)	177
EcoT38I	GRGCYC	1 cut(s)	570
ErhI	CCWWGG	1 cut(s)	193
FaeI	CATG	2 cut(s)	41, 206
FaiI	YATR	8 cut(s)	29, 39, 63, 204, 222, 233, 382, 621
FatI	CATG	2 cut(s)	37, 202
FauI	CCCGC	1 cut(s)	633
FblI	GTMKAC	1 cut(s)	470
Fnu4HI	GCNGC	3 cut(s)	53, 350, 678
FokI	GGATG	6 cut(s)	131, 162, 168, 401, 490, 500
FriOI	GRGCYC	1 cut(s)	570
Fsp4HI	GCNGC	3 cut(s)	53, 350, 678
FspBI	CTAG	1 cut(s)	194
GluI	GCNGC	3 cut(s)	53, 350, 678
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	2 cut(s)	409, 630
Hin1II	CATG	2 cut(s)	41, 206
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	5 cut(s)	167, 368, 492, 611, 682
HpaII	CCGG	2 cut(s)	409, 630
HphI	GGTGA	2 cut(s)	154, 606
Hpy166II	GTNNAC	4 cut(s)	307, 441, 471, 655
Hpy188I	TCNGA	6 cut(s)	268, 388, 453, 508, 607, 687
Hpy8I	GTNNAC	4 cut(s)	307, 441, 471, 655
Hpy99I	CGWCG	1 cut(s)	190
HpyAV	CCTTC	2 cut(s)	503, 535
HpyCH4III	ACNGT	1 cut(s)	652
HpyCH4IV	ACGT	2 cut(s)	45, 322
HpyCH4V	TGCA	3 cut(s)	91, 175, 375
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 355
HpyF3I	CTNAG	5 cut(s)	114, 129, 548, 663, 701
HpySE526I	ACGT	2 cut(s)	45, 322
Hsp92II	CATG	2 cut(s)	41, 206
LmnI	GCTCC	3 cut(s)	301, 513, 565
LpnPI	CCDG	9 cut(s)	51, 315, 385, 422, 451, 547, 565, 583, 643
Lsp1109I	GCAGC	1 cut(s)	39
LweI	GCATC	3 cut(s)	109, 184, 379
MaeI	CTAG	1 cut(s)	194
MaeII	ACGT	2 cut(s)	45, 322
MaeIII	GTNAC	2 cut(s)	161, 335
MboII	GAAGA	2 cut(s)	250, 620
MhlI	GDGCHC	3 cut(s)	88, 202, 570
MluCI	AATT	3 cut(s)	328, 447, 599
MlyI	GAGTC	2 cut(s)	377, 691
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	7 cut(s)	50, 72, 189, 304, 309, 394, 523
Mph1103I	ATGCAT	1 cut(s)	177
MseI	TTAA	3 cut(s)	213, 254, 715
MslI	CAYNNNNRTG	1 cut(s)	650
MspI	CCGG	2 cut(s)	409, 630
MspR9I	CCNGG	2 cut(s)	410, 630
MwoI	GCNNNNNNNGC	2 cut(s)	88, 355
NciI	CCSGG	2 cut(s)	410, 630
NlaIII	CATG	2 cut(s)	41, 206
NlaIV	GGNNCC	2 cut(s)	567, 643
NmuCI	GTSAC	1 cut(s)	335
NsiI	ATGCAT	1 cut(s)	177
OliI	CACNNNNGTG	1 cut(s)	650
PaeR7I	CTCGAG	1 cut(s)	76
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PfeI	GAWTC	3 cut(s)	167, 492, 611
PkrI	GCNGC	3 cut(s)	54, 351, 679
PleI	GAGTC	2 cut(s)	376, 690
PpsI	GAGTC	2 cut(s)	376, 690
Ppu21I	YACGTR	1 cut(s)	323
PsiI	TTATAA	1 cut(s)	29
PspN4I	GGNNCC	2 cut(s)	567, 643
PspPI	GGNCC	2 cut(s)	100, 190
PspXI	VCTCGAGB	1 cut(s)	76
RsaI	GTAC	2 cut(s)	48, 207
RsaNI	GTAC	2 cut(s)	47, 206
RseI	CAYNNNNRTG	1 cut(s)	650
SaqAI	TTAA	3 cut(s)	213, 254, 715
SatI	GCNGC	3 cut(s)	53, 350, 678
Sau96I	GGNCC	2 cut(s)	100, 190
SchI	GAGTC	2 cut(s)	377, 691
ScrFI	CCNGG	2 cut(s)	410, 630
SduI	GDGCHC	3 cut(s)	88, 202, 570
SetI	ASST	6 cut(s)	48, 199, 325, 405, 546, 619
SfaNI	GCATC	3 cut(s)	109, 184, 379
Sfr274I	CTCGAG	1 cut(s)	76
SinI	GGWCC	1 cut(s)	100
SlaI	CTCGAG	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	650
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
Sse9I	AATT	3 cut(s)	328, 447, 599
SsiI	CCGC	6 cut(s)	41, 235, 350, 527, 626, 677
SspMI	CTAG	1 cut(s)	194
StyD4I	CCNGG	2 cut(s)	408, 628
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	1 cut(s)	652
TaiI	ACGT	2 cut(s)	48, 325
TaqI	TCGA	1 cut(s)	77
TasI	AATT	3 cut(s)	328, 447, 599
TauI	GCSGC	2 cut(s)	352, 680
TfiI	GAWTC	3 cut(s)	167, 492, 611
Tru1I	TTAA	3 cut(s)	213, 254, 715
Tru9I	TTAA	3 cut(s)	213, 254, 715
TscAI	CASTG	1 cut(s)	584
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	1 cut(s)	52
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	4 cut(s)	26, 33, 492, 704
TspGWI	ACGGA	1 cut(s)	174
TspRI	CASTG	1 cut(s)	584
VpaK11BI	GGWCC	1 cut(s)	100
XapI	RAATTY	2 cut(s)	328, 599
XhoI	CTCGAG	1 cut(s)	76
XmaJI	CCTAGG	1 cut(s)	193
XmiI	GTMKAC	1 cut(s)	470
XspI	CTAG	1 cut(s)	194
Zsp2I	ATGCAT	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.