Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001330

Physical Location & Seq

Genomic Coordinates Forward (+)

26108660 .. 26111953

Gene Structure 3294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1152500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGTCGGACCGGCAAGGCCCTTGTTTGTTCTGTTCGGATCCTCCATTGTTCAGATGAGCTACGACGTCGGCGGTTGGGGCGCAATTCTTGCCGATATCTACTCTCGTAGAGCAGACATATTGGTGCGTGGTTACTTTGGTTGGAATTCACGGCGTGCTGTAAATGTCCTTGATCAAGTCTTTCCCAAGGATGCCGCTGTAAAACCTTCTTTGGTGATAGTTTATTTTGGTGGTAATGATTCTATGGGGCCTCATCCATCCGGCCTTGGCCCTCATGTCCCGCTTCCTGAATACGTCGAGAACATGAGAAAGATTGCAATTCATCTGAAGAGCCTTTCAGATTCAACGCGGATCATCTTTCTTAGTTGTCCTCCAGTGAATGAGACCTTAATTAATGGAAGCTCAAGCGGGATTTTCAGTGAGATTATAAGAACCAACGAGTTATGCCAACAGTATTCAGAAGCTTGTATAAAGCTGTGCCAGGAAATCAATGTCCCATTTGTTGATCTTTTCACTGCATGTCAGAGAAAAGATGACTGGAGAAATGCTTGTTTTACAGACGGGATTCATTTTTCAGCAGAAGGGAGCAAAGTAGTGGTGGAAGAGATACTCAAGGTACTGAGAGAAGCTGACTGGAAGCCAAGTTTGCACTGGAAATCAATGCCGATAGAATTTTCAGAGGATTCACCGGATGATCTCGTTGCTGCTGACGGAAAGACAACGTTAAATCCTTCCAGCTGGACTTATTACAGGGAGATTCAGTGGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0048046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL Lipase_GDSL_2

Protein Analysis

257

Amino Acids

28.67

Weight (kDa)

5.29

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	10 - 203	7.5e-22	GDSL-like Lipase/Acylhydrolase
Lipase_GDSL_2	PF13472	11 - 197	1.3e-23	GDSL-like Lipase/Acylhydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11210
fragaria_vesca	FvH4_4g09350 FvH4_6g11460 FvH4_6g11470 FvH4_6g17731 FvH4_7g24410 FvH4_7g24410 FvH4_7g24410
malus_domestica	MD01G1152500.v1.1 MD04G1152200.v1.1 MD04G1152600.v1.1 MD07G1221600.v1.1
prunus_persica	Prupe.2G249500_v2.0.a1 Prupe.2G249500_v2.0.a1 Prupe.6G277200_v2.0.a1 Prupe.6G277200_v2.0.a1
pyrus_communis	pycom01g17020 pycom04g13820 pycom04g13830 pycom07g20000
rosa_chinensis	RchiOBHm_Chr1g0370111 RchiOBHm_Chr3g0463151 RchiOBHm_Chr3g0463161 RchiOBHm_Chr4g0412941
rosa_laevigata	RLG00000024807 RLG00000024809 RLG00000027073
rosa_multiflora	Rmu_sc0008124.1_g000006 Rmu_sc0011509.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286810 Rroxscaffold_6G00416920 Rroxscaffold_6G00416930
rosa_rugosa	Rorug01G0354100 Rorug01G0354200 Rorug03G0061800 Rorug03G0061800 Rorug03G0061800 Rorug03G0061800
rosa_samantha	Rh1AG362700 Rh1BG325900 Rh1CG339200 Rh3AG120000 Rh3AG120100 Rh3BG124400 Rh3BG124500 Rh3CG126400 Rh3CG126500 Rh3DG125400 Rh3DG125500 Rh4AG176700 Rh4CG187700
rosa_wichuraiana	Rw1G031920 Rw3G010150 Rw3G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	428
AatII	GACGTC	1 cut(s)	69
AccII	CGCG	1 cut(s)	349
AciI	CCGC	5 cut(s)	72, 195, 281, 349, 408
AclI	AACGTT	1 cut(s)	722
AclWI	GGATC	3 cut(s)	33, 46, 359
AcsI	RAATTY	2 cut(s)	145, 671
AcuI	CTGAAG	1 cut(s)	347
AcyI	GRCGYC	1 cut(s)	66
AdeI	CACNNNGTG	1 cut(s)	155
AfaI	GTAC	1 cut(s)	618
AgsI	TTSAA	1 cut(s)	345
AjnI	CCWGG	1 cut(s)	480
AluBI	AGCT	6 cut(s)	60, 402, 464, 475, 629, 738
AluI	AGCT	6 cut(s)	60, 402, 464, 475, 629, 738
Alw26I	GTCTC	1 cut(s)	377
AlwI	GGATC	3 cut(s)	33, 46, 359
AoxI	GGCC	4 cut(s)	17, 248, 262, 268
ApeKI	GCWGC	1 cut(s)	704
ApoI	RAATTY	2 cut(s)	145, 671
AseI	ATTAAT	1 cut(s)	393
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	4 cut(s)	8, 18, 248, 269
AsuHPI	GGTGA	2 cut(s)	226, 678
AvaII	GGWCC	1 cut(s)	8
BamHI	GGATCC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	691
BccI	CCATC	1 cut(s)	265
BceAI	ACGGC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	482
BclI	TGATCA	1 cut(s)	172
BcoDI	GTCTC	1 cut(s)	377
BfaI	CTAG	1 cut(s)	769
BisI	GCNGC	2 cut(s)	195, 705
BlsI	GCNGC	2 cut(s)	196, 706
Bme1390I	CCNGG	1 cut(s)	482
Bme18I	GGWCC	1 cut(s)	8
BmgT120I	GGNCC	4 cut(s)	8, 18, 248, 269
BmiI	GGNNCC	2 cut(s)	40, 249
BmrFI	CCNGG	1 cut(s)	482
BmsI	GCATC	1 cut(s)	181
BpmI	CTGGAG	2 cut(s)	357, 559
BpuEI	CTTGAG	2 cut(s)	388, 596
BsaHI	GRCGYC	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	377
BsaJI	CCNNGG	2 cut(s)	186, 265
BsaWI	WCCGGW	1 cut(s)	688
BsaXI	ACNNNNNCTCC	1 cut(s)	746
Bse118I	RCCGGY	1 cut(s)	10
Bse1I	ACTGG	4 cut(s)	374, 542, 638, 656
BseBI	CCWGG	1 cut(s)	482
BseDI	CCNNGG	2 cut(s)	186, 265
BseGI	GGATG	4 cut(s)	196, 253, 257, 697
BseMII	CTCAG	1 cut(s)	611
BseNI	ACTGG	4 cut(s)	374, 542, 638, 656
BseXI	GCAGC	1 cut(s)	691
Bsh1236I	CGCG	1 cut(s)	349
BshFI	GGCC	4 cut(s)	19, 250, 264, 270
BsiSI	CCGG	3 cut(s)	11, 261, 689
BslFI	GGGAC	2 cut(s)	263, 479
BsmAI	GTCTC	1 cut(s)	377
BsmFI	GGGAC	2 cut(s)	263, 479
BsnI	GGCC	4 cut(s)	19, 250, 264, 270
Bso31I	GGTCTC	1 cut(s)	377
Bsp143I	GATC	5 cut(s)	38, 172, 351, 505, 694
BspACI	CCGC	5 cut(s)	72, 195, 281, 349, 408
BspANI	GGCC	4 cut(s)	19, 250, 264, 270
BspCNI	CTCAG	1 cut(s)	612
BspFNI	CGCG	1 cut(s)	349
BspLI	GGNNCC	2 cut(s)	40, 249
BspPI	GGATC	3 cut(s)	33, 46, 359
BspQI	GCTCTTC	1 cut(s)	323
BspTNI	GGTCTC	1 cut(s)	377
BsrFI	RCCGGY	1 cut(s)	10
BsrI	ACTGG	4 cut(s)	374, 542, 638, 656
BssAI	RCCGGY	1 cut(s)	10
BssECI	CCNNGG	2 cut(s)	186, 265
BssMI	GATC	5 cut(s)	38, 172, 351, 505, 694
BssNI	GRCGYC	1 cut(s)	66
BssT1I	CCWWGG	2 cut(s)	186, 265
Bst2UI	CCWGG	1 cut(s)	482
Bst4CI	ACNGT	1 cut(s)	453
Bst6I	CTCTTC	2 cut(s)	323, 597
BstACI	GRCGYC	1 cut(s)	66
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	2 cut(s)	362, 620
BstF5I	GGATG	4 cut(s)	196, 253, 257, 697
BstFNI	CGCG	1 cut(s)	349
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	5 cut(s)	41, 175, 354, 508, 697
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	5 cut(s)	38, 172, 351, 505, 694
BstMWI	GCNNNNNNNGC	3 cut(s)	78, 89, 646
BstNI	CCWGG	1 cut(s)	482
BstNSI	RCATGY	1 cut(s)	522
BstSCI	CCNGG	1 cut(s)	480
BstUI	CGCG	1 cut(s)	349
BstV1I	GCAGC	1 cut(s)	691
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BsuRI	GGCC	4 cut(s)	19, 250, 264, 270
BtsCI	GGATG	4 cut(s)	196, 253, 257, 697
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	5 cut(s)	381, 424, 513, 649, 767
Cac8I	GCNNGC	1 cut(s)	156
CfoI	GCGC	1 cut(s)	83
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	4 cut(s)	8, 18, 248, 269
CpoI	CGGWCCG	1 cut(s)	8
Csp6I	GTAC	1 cut(s)	617
CspI	CGGWCCG	1 cut(s)	8
CviAII	CATG	3 cut(s)	275, 304, 519
CviQI	GTAC	1 cut(s)	617
DdeI	CTNAG	2 cut(s)	362, 620
DpnI	GATC	5 cut(s)	40, 174, 353, 507, 696
DpnII	GATC	5 cut(s)	38, 172, 351, 505, 694
DraIII	CACNNNGTG	1 cut(s)	155
Eam1104I	CTCTTC	2 cut(s)	323, 597
EarI	CTCTTC	2 cut(s)	323, 597
Eco130I	CCWWGG	2 cut(s)	186, 265
Eco31I	GGTCTC	1 cut(s)	377
Eco32I	GATATC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	347
EcoO109I	RGGNCCY	2 cut(s)	18, 248
EcoRI	GAATTC	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	480
EcoRV	GATATC	1 cut(s)	97
EcoT14I	CCWWGG	2 cut(s)	186, 265
ErhI	CCWWGG	2 cut(s)	186, 265
FaeI	CATG	3 cut(s)	278, 307, 522
FaiI	YATR	8 cut(s)	119, 245, 276, 305, 428, 445, 470, 520
FaqI	GGGAC	2 cut(s)	263, 479
FatI	CATG	3 cut(s)	274, 303, 518
FauI	CCCGC	2 cut(s)	288, 401
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	2 cut(s)	195, 705
FokI	GGATG	4 cut(s)	203, 240, 244, 704
Fsp4HI	GCNGC	2 cut(s)	195, 705
FspBI	CTAG	1 cut(s)	769
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	2 cut(s)	195, 705
GsuI	CTGGAG	2 cut(s)	357, 559
HaeIII	GGCC	4 cut(s)	19, 250, 264, 270
HapII	CCGG	3 cut(s)	11, 261, 689
HhaI	GCGC	1 cut(s)	83
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	3 cut(s)	278, 307, 522
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HindIII	AAGCTT	1 cut(s)	462
HinfI	GANTC	5 cut(s)	239, 341, 565, 683, 757
HpaII	CCGG	3 cut(s)	11, 261, 689
HphI	GGTGA	2 cut(s)	226, 678
Hpy188I	TCNGA	8 cut(s)	8, 38, 54, 327, 340, 460, 525, 679
Hpy188III	TCNNGA	2 cut(s)	287, 298
Hpy99I	CGWCG	3 cut(s)	68, 71, 299
HpyAV	CCTTC	3 cut(s)	216, 575, 741
HpyCH4III	ACNGT	1 cut(s)	453
HpyCH4IV	ACGT	3 cut(s)	66, 294, 722
HpyCH4V	TGCA	3 cut(s)	317, 518, 649
HpyF10VI	GCNNNNNNNGC	3 cut(s)	78, 89, 646
HpyF3I	CTNAG	2 cut(s)	362, 620
HpySE526I	ACGT	3 cut(s)	66, 294, 722
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	3 cut(s)	278, 307, 522
HspAI	GCGC	1 cut(s)	81
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	5 cut(s)	38, 172, 351, 505, 694
LguI	GCTCTTC	1 cut(s)	323
LmnI	GCTCC	1 cut(s)	585
Lsp1109I	GCAGC	1 cut(s)	691
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	1 cut(s)	769
MaeII	ACGT	3 cut(s)	66, 294, 722
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	5 cut(s)	40, 174, 353, 507, 696
MboI	GATC	5 cut(s)	38, 172, 351, 505, 694
MboII	GAAGA	2 cut(s)	340, 614
MflI	RGATCY	1 cut(s)	38
MluCI	AATT	5 cut(s)	84, 145, 318, 390, 671
MmeI	TCCRAC	1 cut(s)	122
MnlI	CCTC	5 cut(s)	52, 261, 282, 381, 673
MseI	TTAA	3 cut(s)	389, 393, 725
MslI	CAYNNNNRTG	1 cut(s)	122
MspA1I	CMGCKG	2 cut(s)	197, 738
MspI	CCGG	3 cut(s)	11, 261, 689
MspR9I	CCNGG	1 cut(s)	482
MvaI	CCWGG	1 cut(s)	482
MvnI	CGCG	1 cut(s)	349
MwoI	GCNNNNNNNGC	3 cut(s)	78, 89, 646
NdeII	GATC	5 cut(s)	38, 172, 351, 505, 694
NlaIII	CATG	3 cut(s)	278, 307, 522
NlaIV	GGNNCC	2 cut(s)	40, 249
NspI	RCATGY	1 cut(s)	522
PacI	TTAATTAA	1 cut(s)	393
PciSI	GCTCTTC	1 cut(s)	323
PfeI	GAWTC	5 cut(s)	239, 341, 565, 683, 757
PkrI	GCNGC	2 cut(s)	196, 706
PshBI	ATTAAT	1 cut(s)	393
PsiI	TTATAA	1 cut(s)	428
Psp1406I	AACGTT	1 cut(s)	722
Psp6I	CCWGG	1 cut(s)	480
PspGI	CCWGG	1 cut(s)	480
PspN4I	GGNNCC	2 cut(s)	40, 249
PspPI	GGNCC	4 cut(s)	8, 18, 248, 269
PsuI	RGATCY	1 cut(s)	38
PvuII	CAGCTG	1 cut(s)	738
RsaI	GTAC	1 cut(s)	618
RsaNI	GTAC	1 cut(s)	617
RseI	CAYNNNNRTG	1 cut(s)	122
Rsr2I	CGGWCCG	1 cut(s)	8
RsrII	CGGWCCG	1 cut(s)	8
SapI	GCTCTTC	1 cut(s)	323
SaqAI	TTAA	3 cut(s)	389, 393, 725
SatI	GCNGC	2 cut(s)	195, 705
Sau3AI	GATC	5 cut(s)	38, 172, 351, 505, 694
Sau96I	GGNCC	4 cut(s)	8, 18, 248, 269
ScrFI	CCNGG	1 cut(s)	482
SfaNI	GCATC	1 cut(s)	181
SinI	GGWCC	1 cut(s)	8
SmiMI	CAYNNNNRTG	1 cut(s)	122
SmlI	CTYRAG	2 cut(s)	403, 611
SmoI	CTYRAG	2 cut(s)	403, 611
Sse9I	AATT	5 cut(s)	84, 145, 318, 390, 671
SsiI	CCGC	5 cut(s)	72, 195, 281, 349, 408
SspMI	CTAG	1 cut(s)	769
StyD4I	CCNGG	1 cut(s)	480
StyI	CCWWGG	2 cut(s)	186, 265
TaaI	ACNGT	1 cut(s)	453
TaiI	ACGT	3 cut(s)	69, 297, 725
TaqI	TCGA	1 cut(s)	297
TasI	AATT	5 cut(s)	84, 145, 318, 390, 671
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	5 cut(s)	239, 341, 565, 683, 757
Tru1I	TTAA	3 cut(s)	389, 393, 725
Tru9I	TTAA	3 cut(s)	389, 393, 725
TscAI	CASTG	5 cut(s)	381, 424, 520, 656, 767
TseI	GCWGC	1 cut(s)	704
TspDTI	ATGAA	2 cut(s)	311, 557
TspGWI	ACGGA	1 cut(s)	726
TspRI	CASTG	5 cut(s)	381, 424, 520, 656, 767
VpaK11BI	GGWCC	1 cut(s)	8
VspI	ATTAAT	1 cut(s)	393
XapI	RAATTY	2 cut(s)	145, 671
XceI	RCATGY	1 cut(s)	522
XcmI	CCANNNNNNNNNTGG	1 cut(s)	648
XspI	CTAG	1 cut(s)	769
ZraI	GACGTC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.