Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011509.1

Orthogroup ID

OG0001330

Physical Location & Seq

Genomic Coordinates Forward (+)

614 .. 2109

Gene Structure 1496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011509.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atggggcctcatccatctgggctaggacctcatgtaccacttcctgagtatattgagaacatgaggaaaattgcaaatcatctccagagcctttcagattcaacacgcatcgtttttcttagttgtcctcctgtgaatgaggccacagttcgtgaaaataaaagtccttatctcagcgagttaataagaacgaatgagctatgccaacaatattccgaagcttgtataaagctatgccaggaactggatatcaaggtggttgatctttttacggcaatacagaaaggagaaaactgttttacagatgggattcatttatcagctgaagggagcaaaatagttgcggaggagatactgaaagtactgagagaagctgattggaagccaagtttacactggaaatccatgccaacagaatttgcagaggattcaccatatgatcttgttgctgctgatggaaagacgacgttaaatccctccgaatggacgttttatagagattttcactggaactctctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0048046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL Lipase_GDSL_2

Protein Analysis

173

Amino Acids

19.62

Weight (kDa)

5.1

Isoelectric Point (pI)

45.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11210
fragaria_vesca	FvH4_4g09350 FvH4_6g11460 FvH4_6g11470 FvH4_6g17731 FvH4_7g24410 FvH4_7g24410 FvH4_7g24410
malus_domestica	MD01G1152500.v1.1 MD04G1152200.v1.1 MD04G1152600.v1.1 MD07G1221600.v1.1
prunus_persica	Prupe.2G249500_v2.0.a1 Prupe.2G249500_v2.0.a1 Prupe.6G277200_v2.0.a1 Prupe.6G277200_v2.0.a1
pyrus_communis	pycom01g17020 pycom04g13820 pycom04g13830 pycom07g20000
rosa_chinensis	RchiOBHm_Chr1g0370111 RchiOBHm_Chr3g0463151 RchiOBHm_Chr3g0463161 RchiOBHm_Chr4g0412941
rosa_laevigata	RLG00000024807 RLG00000024809 RLG00000027073
rosa_multiflora	Rmu_sc0008124.1_g000006 Rmu_sc0011509.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286810 Rroxscaffold_6G00416920 Rroxscaffold_6G00416930
rosa_rugosa	Rorug01G0354100 Rorug01G0354200 Rorug03G0061800 Rorug03G0061800 Rorug03G0061800 Rorug03G0061800
rosa_samantha	Rh1AG362700 Rh1BG325900 Rh1CG339200 Rh3AG120000 Rh3AG120100 Rh3BG124400 Rh3BG124500 Rh3CG126400 Rh3CG126500 Rh3DG125400 Rh3DG125500 Rh4AG176700 Rh4CG187700
rosa_wichuraiana	Rw1G031920 Rw3G010150 Rw3G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	244
AciI	CCGC	1 cut(s)	344
AcsI	RAATTY	1 cut(s)	416
AcuI	CTGAAG	1 cut(s)	345
AfaI	GTAC	2 cut(s)	36, 363
AfiI	CCNNNNNNNGG	2 cut(s)	244, 483
AgsI	TTSAA	1 cut(s)	102
AjnI	CCWGG	1 cut(s)	237
AluBI	AGCT	5 cut(s)	199, 221, 232, 323, 374
AluI	AGCT	5 cut(s)	199, 221, 232, 323, 374
AlwNI	CAGNNNCTG	1 cut(s)	244
AoxI	GGCC	2 cut(s)	5, 141
ApeKI	GCWGC	1 cut(s)	449
ApoI	RAATTY	1 cut(s)	416
AspS9I	GGNCC	2 cut(s)	5, 26
AsuHPI	GGTGA	1 cut(s)	423
AvaII	GGWCC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	436
BccI	CCATC	3 cut(s)	22, 299, 449
BceAI	ACGGC	1 cut(s)	288
BciT130I	CCWGG	1 cut(s)	239
BfaI	CTAG	1 cut(s)	23
BisI	GCNGC	1 cut(s)	450
BlsI	GCNGC	1 cut(s)	451
BmcAI	AGTACT	1 cut(s)	363
Bme1390I	CCNGG	1 cut(s)	239
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	2 cut(s)	5, 26
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	239
BmsI	GCATC	1 cut(s)	117
BpmI	CTGGAG	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	2 cut(s)	244, 483
Bse1I	ACTGG	3 cut(s)	249, 401, 512
BseBI	CCWGG	1 cut(s)	239
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	244, 483
BseMII	CTCAG	3 cut(s)	36, 187, 356
BseNI	ACTGG	3 cut(s)	249, 401, 512
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	1 cut(s)	436
BshFI	GGCC	2 cut(s)	7, 143
BslI	CCNNNNNNNGG	2 cut(s)	244, 483
BsnI	GGCC	2 cut(s)	7, 143
Bsp143I	GATC	2 cut(s)	262, 439
BspACI	CCGC	1 cut(s)	344
BspANI	GGCC	2 cut(s)	7, 143
BspCNI	CTCAG	3 cut(s)	37, 186, 357
BspLI	GGNNCC	1 cut(s)	6
BsrI	ACTGG	3 cut(s)	249, 401, 512
BssMI	GATC	2 cut(s)	262, 439
Bst2UI	CCWGG	1 cut(s)	239
Bst4CI	ACNGT	2 cut(s)	148, 296
BstDEI	CTNAG	4 cut(s)	45, 119, 173, 365
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	2 cut(s)	265, 442
BstMBI	GATC	2 cut(s)	262, 439
BstNI	CCWGG	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	436
BsuRI	GGCC	2 cut(s)	7, 143
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	2 cut(s)	394, 505
CaiI	CAGNNNCTG	1 cut(s)	244
Cfr13I	GGNCC	2 cut(s)	5, 26
Csp6I	GTAC	2 cut(s)	35, 362
CviAII	CATG	3 cut(s)	32, 61, 406
CviQI	GTAC	2 cut(s)	35, 362
DdeI	CTNAG	4 cut(s)	45, 119, 173, 365
DpnI	GATC	2 cut(s)	264, 441
DpnII	GATC	2 cut(s)	262, 439
Eco32I	GATATC	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	26
Eco57I	CTGAAG	1 cut(s)	345
EcoO109I	RGGNCCY	2 cut(s)	5, 26
EcoRII	CCWGG	1 cut(s)	237
EcoRV	GATATC	1 cut(s)	250
FaeI	CATG	3 cut(s)	35, 64, 409
FatI	CATG	3 cut(s)	31, 60, 405
FauNDI	CATATG	1 cut(s)	436
Fnu4HI	GCNGC	1 cut(s)	450
Fsp4HI	GCNGC	1 cut(s)	450
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	1 cut(s)	450
GsuI	CTGGAG	1 cut(s)	68
HaeIII	GGCC	2 cut(s)	7, 143
Hin1II	CATG	3 cut(s)	35, 64, 409
HindIII	AAGCTT	1 cut(s)	219
HinfI	GANTC	3 cut(s)	98, 310, 428
HphI	GGTGA	1 cut(s)	423
Hpy166II	GTNNAC	1 cut(s)	392
Hpy188I	TCNGA	3 cut(s)	97, 217, 481
Hpy188III	TCNNGA	3 cut(s)	44, 85, 152
Hpy8I	GTNNAC	1 cut(s)	392
Hpy99I	CGWCG	1 cut(s)	469
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	2 cut(s)	148, 296
HpyCH4IV	ACGT	2 cut(s)	467, 488
HpyCH4V	TGCA	2 cut(s)	74, 422
HpyF3I	CTNAG	4 cut(s)	45, 119, 173, 365
HpySE526I	ACGT	2 cut(s)	467, 488
Hsp92II	CATG	3 cut(s)	35, 64, 409
Kzo9I	GATC	2 cut(s)	262, 439
LmnI	GCTCC	1 cut(s)	330
LpnPI	CCDG	9 cut(s)	3, 57, 98, 144, 224, 230, 251, 382, 493
Lsp1109I	GCAGC	1 cut(s)	436
LweI	GCATC	1 cut(s)	117
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	2 cut(s)	467, 488
MalI	GATC	2 cut(s)	264, 441
MboI	GATC	2 cut(s)	262, 439
MluCI	AATT	2 cut(s)	69, 416
MnlI	CCTC	8 cut(s)	18, 39, 57, 133, 138, 340, 418, 487
MseI	TTAA	2 cut(s)	182, 470
MspA1I	CMGCKG	1 cut(s)	323
MspR9I	CCNGG	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	239
NdeI	CATATG	1 cut(s)	436
NdeII	GATC	2 cut(s)	262, 439
NlaIII	CATG	3 cut(s)	35, 64, 409
NlaIV	GGNNCC	1 cut(s)	6
PfeI	GAWTC	3 cut(s)	98, 310, 428
PflMI	CCANNNNNTGG	1 cut(s)	244
PkrI	GCNGC	1 cut(s)	451
PpuMI	RGGWCCY	1 cut(s)	26
Psp5II	RGGWCCY	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	5, 26
PspPPI	RGGWCCY	1 cut(s)	26
PstNI	CAGNNNCTG	1 cut(s)	244
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	2 cut(s)	36, 363
RsaNI	GTAC	2 cut(s)	35, 362
SaqAI	TTAA	2 cut(s)	182, 470
SatI	GCNGC	1 cut(s)	450
Sau3AI	GATC	2 cut(s)	262, 439
Sau96I	GGNCC	2 cut(s)	5, 26
ScaI	AGTACT	1 cut(s)	363
ScrFI	CCNGG	1 cut(s)	239
SetI	ASST	9 cut(s)	31, 201, 223, 234, 258, 325, 376, 470, 491
SfaNI	GCATC	1 cut(s)	117
SinI	GGWCC	1 cut(s)	26
Sse9I	AATT	2 cut(s)	69, 416
SsiI	CCGC	1 cut(s)	344
SspI	AATATT	1 cut(s)	212
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	237
TaaI	ACNGT	2 cut(s)	148, 296
TaiI	ACGT	2 cut(s)	470, 491
TasI	AATT	2 cut(s)	69, 416
TatI	WGTACW	1 cut(s)	361
TfiI	GAWTC	3 cut(s)	98, 310, 428
Tru1I	TTAA	2 cut(s)	182, 470
Tru9I	TTAA	2 cut(s)	182, 470
TscAI	CASTG	2 cut(s)	401, 512
TseI	GCWGC	1 cut(s)	449
TspDTI	ATGAA	1 cut(s)	302
TspRI	CASTG	2 cut(s)	401, 512
Van91I	CCANNNNNTGG	1 cut(s)	244
VpaK11BI	GGWCC	1 cut(s)	26
XapI	RAATTY	1 cut(s)	416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	393
XspI	CTAG	1 cut(s)	23
ZrmI	AGTACT	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.