Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001330

Physical Location & Seq

Genomic Coordinates Reverse (-)

8151366 .. 8156154

Gene Structure 4789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027073

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGCCAAATGCCAAATATTGGAGAAGAGAAACACAGAGTCGGAGAAAGATGGTGGCACCCGCGAGGCCTCAGTTTGTTCTGTTCGGATCGTCCATAGTCCAGCTCAGCTTCAGCCACGGCGGCTGGGGCTCCGTTCTCTCCGACCTCTACGCTCGCAAAGACTGCACTGGAATTCTCACACCCATTTTGGGTTTTGATGCAGCTGTTCAACCTTCTTTGGTGATAGTCTATTTTGGCGGGAATGATTCTATGGGGCCTCATCCATCTGGGCTAGGACCTCATGTACCACTTCCTGAGTATATTGAGAACATGAGGAAGATTGCAAATCATCTCCAGAGCCTTTCAGATTCAACACGCATCATTTTTCTTAGTTGTCCTCCCGTGAATGAGGCCACAATTCGTGCAAATAAAAGTCCTTATCTCAGCGAGTTAGTAAGAACGAATGAGCTATGCCAACAATATTCCGAAGCTTGTATAAAGCTATGCCAGGAACTGGATATCCAGGTGGTTGATCTTTTTACGGCAATACAGAAAGGAGAAAACTGTTTTACGGATGGGATTCATTTATCAGCTGAAGGGAGCAAAATAGTGGCGGAGGAGATACTGAAGGTACTGAGAGAAGCTGATTGGAAGCCAAGTTTACACTGGAAATCCATGCCAACAGAATTTGCAGAGGATTCACCATATGATCTTGTTGCTGCTGATGGAGAGACGACGTTAAATCCCTCCGAATGGACATTTCGCCGCCACCCACAAACCCGAACCTCTAAAACAACTACTCCGGAATTTGTCTTGGAGATGCGGGGAAGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0048046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL Lipase_GDSL_2

Protein Analysis

272

Amino Acids

30.38

Weight (kDa)

6.18

Isoelectric Point (pI)

52.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	26 - 201	3.7e-16	GDSL-like Lipase/Acylhydrolase
Lipase_GDSL_2	PF13472	28 - 195	1.2e-15	GDSL-like Lipase/Acylhydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11210
fragaria_vesca	FvH4_4g09350 FvH4_6g11460 FvH4_6g11470 FvH4_6g17731 FvH4_7g24410 FvH4_7g24410 FvH4_7g24410
malus_domestica	MD01G1152500.v1.1 MD04G1152200.v1.1 MD04G1152600.v1.1 MD07G1221600.v1.1
prunus_persica	Prupe.2G249500_v2.0.a1 Prupe.2G249500_v2.0.a1 Prupe.6G277200_v2.0.a1 Prupe.6G277200_v2.0.a1
pyrus_communis	pycom01g17020 pycom04g13820 pycom04g13830 pycom07g20000
rosa_chinensis	RchiOBHm_Chr1g0370111 RchiOBHm_Chr3g0463151 RchiOBHm_Chr3g0463161 RchiOBHm_Chr4g0412941
rosa_laevigata	RLG00000024807 RLG00000024809 RLG00000027073
rosa_multiflora	Rmu_sc0008124.1_g000006 Rmu_sc0011509.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286810 Rroxscaffold_6G00416920 Rroxscaffold_6G00416930
rosa_rugosa	Rorug01G0354100 Rorug01G0354200 Rorug03G0061800 Rorug03G0061800 Rorug03G0061800 Rorug03G0061800
rosa_samantha	Rh1AG362700 Rh1BG325900 Rh1CG339200 Rh3AG120000 Rh3AG120100 Rh3BG124400 Rh3BG124500 Rh3CG126400 Rh3CG126500 Rh3DG125400 Rh3DG125500 Rh4AG176700 Rh4CG187700
rosa_wichuraiana	Rw1G031920 Rw3G010150 Rw3G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	55
AccB7I	CCANNNNNTGG	2 cut(s)	18, 493
AccII	CGCG	1 cut(s)	62
AccIII	TCCGGA	1 cut(s)	781
AciI	CCGC	6 cut(s)	60, 120, 237, 593, 745, 802
AclWI	GGATC	1 cut(s)	94
AcsI	RAATTY	3 cut(s)	171, 665, 785
AcuI	CTGAAG	3 cut(s)	94, 594, 626
AfaI	GTAC	2 cut(s)	285, 612
AfiI	CCNNNNNNNGG	4 cut(s)	18, 188, 493, 732
AgsI	TTSAA	2 cut(s)	209, 351
AjnI	CCWGG	2 cut(s)	486, 501
AloI	GAACNNNNNNTCC	2 cut(s)	483, 515
AluBI	AGCT	8 cut(s)	103, 108, 203, 448, 470, 481, 572, 623
AluI	AGCT	8 cut(s)	103, 108, 203, 448, 470, 481, 572, 623
Alw26I	GTCTC	1 cut(s)	704
AlwI	GGATC	1 cut(s)	94
AlwNI	CAGNNNCTG	1 cut(s)	493
Aor13HI	TCCGGA	1 cut(s)	781
AoxI	GGCC	3 cut(s)	65, 254, 390
ApeKI	GCWGC	2 cut(s)	200, 698
ApoI	RAATTY	3 cut(s)	171, 665, 785
AspS9I	GGNCC	2 cut(s)	254, 275
AsuHPI	GGTGA	2 cut(s)	232, 672
AvaII	GGWCC	1 cut(s)	275
BanI	GGYRCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	131
BbvI	GCAGC	2 cut(s)	212, 685
BccI	CCATC	4 cut(s)	43, 271, 548, 698
BceAI	ACGGC	2 cut(s)	133, 537
BciT130I	CCWGG	2 cut(s)	488, 503
BcoDI	GTCTC	1 cut(s)	704
BfaI	CTAG	1 cut(s)	272
BglI	GCCNNNNNGGC	1 cut(s)	120
BisI	GCNGC	4 cut(s)	121, 201, 699, 745
BlpI	GCTNAGC	1 cut(s)	104
BlsI	GCNGC	4 cut(s)	122, 202, 700, 746
Bme1390I	CCNGG	2 cut(s)	488, 503
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	2 cut(s)	254, 275
BmiI	GGNNCC	3 cut(s)	57, 130, 255
BmrFI	CCNGG	2 cut(s)	488, 503
BmsI	GCATC	3 cut(s)	187, 366, 789
BpmI	CTGGAG	1 cut(s)	317
Bpu1102I	GCTNAGC	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	115
BsaWI	WCCGGW	1 cut(s)	781
BsaXI	ACNNNNNCTCC	2 cut(s)	763, 793
Bsc4I	CCNNNNNNNGG	4 cut(s)	18, 188, 493, 732
Bse1I	ACTGG	3 cut(s)	172, 498, 650
BseAI	TCCGGA	1 cut(s)	781
BseBI	CCWGG	2 cut(s)	488, 503
BseDI	CCNNGG	1 cut(s)	115
BseGI	GGATG	2 cut(s)	259, 559
BseLI	CCNNNNNNNGG	4 cut(s)	18, 188, 493, 732
BseMII	CTCAG	5 cut(s)	83, 118, 285, 436, 605
BseNI	ACTGG	3 cut(s)	172, 498, 650
BseRI	GAGGAG	1 cut(s)	611
BseXI	GCAGC	2 cut(s)	212, 685
BseYI	CCCAGC	1 cut(s)	123
BsgI	GTGCAG	1 cut(s)	148
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	3 cut(s)	67, 256, 392
BshNI	GGYRCC	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	782
BslI	CCNNNNNNNGG	4 cut(s)	18, 188, 493, 732
BsmAI	GTCTC	1 cut(s)	704
BsmBI	CGTCTC	1 cut(s)	704
BsnI	GGCC	3 cut(s)	67, 256, 392
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp13I	TCCGGA	1 cut(s)	781
Bsp143I	GATC	3 cut(s)	86, 511, 688
Bsp1720I	GCTNAGC	1 cut(s)	104
BspACI	CCGC	6 cut(s)	60, 120, 237, 593, 745, 802
BspANI	GGCC	3 cut(s)	67, 256, 392
BspCNI	CTCAG	5 cut(s)	82, 117, 286, 435, 606
BspEI	TCCGGA	1 cut(s)	781
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	3 cut(s)	57, 130, 255
BspPI	GGATC	1 cut(s)	94
BspT107I	GGYRCC	1 cut(s)	55
BsrI	ACTGG	3 cut(s)	172, 498, 650
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	3 cut(s)	86, 511, 688
Bst2UI	CCWGG	2 cut(s)	488, 503
Bst4CI	ACNGT	1 cut(s)	545
Bst6I	CTCTTC	1 cut(s)	19
BstAPI	GCANNNNNTGC	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	154
BstDEI	CTNAG	6 cut(s)	69, 104, 294, 368, 422, 614
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	2 cut(s)	259, 559
BstFNI	CGCG	1 cut(s)	62
BstKTI	GATC	3 cut(s)	89, 514, 691
BstMAI	GTCTC	1 cut(s)	704
BstMBI	GATC	3 cut(s)	86, 511, 688
BstMWI	GCNNNNNNNGC	3 cut(s)	120, 126, 162
BstNI	CCWGG	2 cut(s)	488, 503
BstSCI	CCNGG	2 cut(s)	486, 501
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	2 cut(s)	212, 685
BsuRI	GGCC	3 cut(s)	67, 256, 392
BtgI	CCRYGG	1 cut(s)	115
BtsCI	GGATG	2 cut(s)	259, 559
BtsIMutI	CAGTG	2 cut(s)	165, 643
Cac8I	GCNNGC	1 cut(s)	154
CaiI	CAGNNNCTG	1 cut(s)	493
Cfr13I	GGNCC	2 cut(s)	254, 275
Csp6I	GTAC	2 cut(s)	284, 611
CviAII	CATG	3 cut(s)	281, 310, 655
CviQI	GTAC	2 cut(s)	284, 611
DdeI	CTNAG	6 cut(s)	69, 104, 294, 368, 422, 614
DpnI	GATC	3 cut(s)	88, 513, 690
DpnII	GATC	3 cut(s)	86, 511, 688
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
EciI	GGCGGA	1 cut(s)	608
Eco147I	AGGCCT	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	131
Eco32I	GATATC	1 cut(s)	499
Eco47I	GGWCC	1 cut(s)	275
Eco57I	CTGAAG	3 cut(s)	94, 594, 626
EcoO109I	RGGNCCY	2 cut(s)	254, 275
EcoRI	GAATTC	1 cut(s)	171
EcoRII	CCWGG	2 cut(s)	486, 501
EcoRV	GATATC	1 cut(s)	499
EcoT38I	GRGCYC	1 cut(s)	131
Esp3I	CGTCTC	1 cut(s)	704
FaeI	CATG	3 cut(s)	284, 313, 658
FatI	CATG	3 cut(s)	280, 309, 654
FauI	CCCGC	3 cut(s)	67, 230, 795
FauNDI	CATATG	1 cut(s)	685
Fnu4HI	GCNGC	4 cut(s)	121, 201, 699, 745
FokI	GGATG	2 cut(s)	246, 566
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	4 cut(s)	121, 201, 699, 745
FspBI	CTAG	1 cut(s)	272
GluI	GCNGC	4 cut(s)	121, 201, 699, 745
GsaI	CCCAGC	1 cut(s)	127
GsuI	CTGGAG	1 cut(s)	317
HaeIII	GGCC	3 cut(s)	67, 256, 392
HapII	CCGG	1 cut(s)	782
Hin1II	CATG	3 cut(s)	284, 313, 658
HindIII	AAGCTT	1 cut(s)	468
HinfI	GANTC	5 cut(s)	37, 245, 347, 559, 677
HpaII	CCGG	1 cut(s)	782
HphI	GGTGA	2 cut(s)	232, 672
Hpy166II	GTNNAC	1 cut(s)	641
Hpy188I	TCNGA	6 cut(s)	42, 86, 142, 346, 466, 730
Hpy188III	TCNNGA	3 cut(s)	293, 334, 782
Hpy8I	GTNNAC	1 cut(s)	641
Hpy99I	CGWCG	1 cut(s)	718
HpyAV	CCTTC	3 cut(s)	222, 569, 601
HpyCH4III	ACNGT	1 cut(s)	545
HpyCH4IV	ACGT	1 cut(s)	716
HpyCH4V	TGCA	5 cut(s)	165, 200, 323, 404, 671
HpyF10VI	GCNNNNNNNGC	3 cut(s)	120, 126, 162
HpyF3I	CTNAG	6 cut(s)	69, 104, 294, 368, 422, 614
HpySE526I	ACGT	1 cut(s)	716
Hsp92II	CATG	3 cut(s)	284, 313, 658
Kpn2I	TCCGGA	1 cut(s)	781
Kzo9I	GATC	3 cut(s)	86, 511, 688
LmnI	GCTCC	2 cut(s)	134, 579
Lsp1109I	GCAGC	2 cut(s)	212, 685
LweI	GCATC	3 cut(s)	187, 366, 789
MaeI	CTAG	1 cut(s)	272
MaeII	ACGT	1 cut(s)	716
MalI	GATC	3 cut(s)	88, 513, 690
MboI	GATC	3 cut(s)	86, 511, 688
MboII	GAAGA	2 cut(s)	36, 328
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	4 cut(s)	171, 396, 665, 785
MlyI	GAGTC	1 cut(s)	46
MmeI	TCCRAC	2 cut(s)	20, 165
MroI	TCCGGA	1 cut(s)	781
MseI	TTAA	1 cut(s)	719
MspA1I	CMGCKG	2 cut(s)	203, 572
MspI	CCGG	1 cut(s)	782
MspR9I	CCNGG	2 cut(s)	488, 503
MvaI	CCWGG	2 cut(s)	488, 503
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	3 cut(s)	120, 126, 162
NdeI	CATATG	1 cut(s)	685
NdeII	GATC	3 cut(s)	86, 511, 688
NlaIII	CATG	3 cut(s)	284, 313, 658
NlaIV	GGNNCC	3 cut(s)	57, 130, 255
PceI	AGGCCT	1 cut(s)	67
PfeI	GAWTC	4 cut(s)	245, 347, 559, 677
PflMI	CCANNNNNTGG	2 cut(s)	18, 493
PkrI	GCNGC	4 cut(s)	122, 202, 700, 746
PleI	GAGTC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	45
PpuMI	RGGWCCY	1 cut(s)	275
Psp5II	RGGWCCY	1 cut(s)	275
Psp6I	CCWGG	2 cut(s)	486, 501
PspFI	CCCAGC	1 cut(s)	123
PspGI	CCWGG	2 cut(s)	486, 501
PspN4I	GGNNCC	3 cut(s)	57, 130, 255
PspPI	GGNCC	2 cut(s)	254, 275
PspPPI	RGGWCCY	1 cut(s)	275
PstNI	CAGNNNCTG	1 cut(s)	493
PvuII	CAGCTG	2 cut(s)	203, 572
RsaI	GTAC	2 cut(s)	285, 612
RsaNI	GTAC	2 cut(s)	284, 611
SaqAI	TTAA	1 cut(s)	719
SatI	GCNGC	4 cut(s)	121, 201, 699, 745
Sau3AI	GATC	3 cut(s)	86, 511, 688
Sau96I	GGNCC	2 cut(s)	254, 275
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	2 cut(s)	488, 503
SduI	GDGCHC	1 cut(s)	131
SfaNI	GCATC	3 cut(s)	187, 366, 789
SinI	GGWCC	1 cut(s)	275
Sse9I	AATT	4 cut(s)	171, 396, 665, 785
SseBI	AGGCCT	1 cut(s)	67
SsiI	CCGC	6 cut(s)	60, 120, 237, 593, 745, 802
SspI	AATATT	2 cut(s)	17, 461
SspMI	CTAG	1 cut(s)	272
StuI	AGGCCT	1 cut(s)	67
StyD4I	CCNGG	2 cut(s)	486, 501
TaaI	ACNGT	1 cut(s)	545
TaiI	ACGT	1 cut(s)	719
TasI	AATT	4 cut(s)	171, 396, 665, 785
TauI	GCSGC	2 cut(s)	123, 747
TfiI	GAWTC	4 cut(s)	245, 347, 559, 677
Tru1I	TTAA	1 cut(s)	719
Tru9I	TTAA	1 cut(s)	719
TscAI	CASTG	2 cut(s)	172, 650
TseI	GCWGC	2 cut(s)	200, 698
TspDTI	ATGAA	1 cut(s)	551
TspGWI	ACGGA	2 cut(s)	121, 566
TspRI	CASTG	2 cut(s)	172, 650
Van91I	CCANNNNNTGG	2 cut(s)	18, 493
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	3 cut(s)	171, 665, 785
XcmI	CCANNNNNNNNNTGG	1 cut(s)	642
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.