Rorug03G0061800

GDSL esterase lipase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
4591095 .. 4595389
4295 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0061800.1

Sequence Viewer

Length: 990 bp
ATGGCCGATTTCCAGACCTCGACTCACCGAAGCAAGTGGATCTTCACGCCCGAACAGCTGGCCGAAAAATACAAGGCTGCGAATCAACAAGCAATAAAAACATTGGAAAAGTATGGAGTAGCACTAGCGAAAGTAAATGATGACGGGTCATTATCGTACCCCGAAATTGCAAAAGAGAATGCTGACAAGCATTCTCGTCCAAAAGCGGTTACCATTGAAGAGGAGCAATTGATGAGAGTATTTTATGAAACTAAACTTCAAGAAGTGTGTAACAACTTTCATTTCCCTCATAAAGTTCAGGCAACAGCTCTCATATATTTTAAAAGGTTTTATCTAAGATGGTCAGTTATGCAACATGAACCAAAAAATATAATATTAACCTGTATATATGCGGCTTGTAAGATAGAAGAAAGCCATGTATCAGCAGAGGAGCTTGGTAAGGGGATCTCACAGGATCATCAAATGATACTCAATAATGAGTTGATAGTTTATCAGAGTTTGGAATTTGATCTTATTGTCTATGCACCGTATCGCTCAGTTCAAGGTTTTATCCATGATATGGAGGAATCCTGCGGATTAGAGGATGACCAGCTTCCAATGCTTCAGACTTTGCGGGACACTGCAAAGATGGATGTTGATAAAATCATGCTCACAGATGCACCACTTCTATTCCCTCCTGGGCAGTTGGCCTTGGCTGCGCTGCGTAGTGCAAATCAGGTGCACAGAGTTGTTGACTTTGACAGATACCTGGAGAGCATGCTCTCTCGTAAGAGTTCTGCACATACCATTTCAGAGCTAGTTGAATCCCTTAATGCAATTGATTCTTGGGTAAGGAGATACAAATTTCCTTCTGACAAGGAAATCCTGCACATCAATCGGAAACTGAAATCTTGTTGGGGTCAAAGTTCGCGTGACGAAAGCAAGAAACGGGATAAGAAATCGAAGCACAAGTCCAAGAGGGGTTCAAATGAAGCACAAAATGTAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

329

Amino Acids

37.97

Weight (kDa)

7.68

Isoelectric Point (pI)

56.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 75 - 171 1.3e-11 Cyclin, N-terminal domain
TFIIB PF00382 84 - 145 3.7e-07 Transcription factor TFIIB repeat
Cyclin_C_2 PF16899 176 - 274 1.1e-12 Cyclin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 559
AccII CGCG 1 cut(s) 910
AciI CCGC 4 cut(s) 206, 392, 573, 613
AclWI GGATC 3 cut(s) 47, 452, 462
AcoI YGGCCR 2 cut(s) 3, 60
AcsI RAATTY 2 cut(s) 503, 842
AcuI CTGAAG 1 cut(s) 587
AfaI GTAC 1 cut(s) 158
AfiI CCNNNNNNNGG 1 cut(s) 559
AgsI TTSAA 5 cut(s) 218, 260, 542, 803, 966
AjnI CCWGG 2 cut(s) 676, 747
AluBI AGCT 5 cut(s) 58, 308, 433, 592, 796
AluI AGCT 5 cut(s) 58, 308, 433, 592, 796
Alw21I GWGCWC 1 cut(s) 723
Alw44I GTGCAC 1 cut(s) 719
AlwI GGATC 3 cut(s) 47, 452, 462
AoxI GGCC 3 cut(s) 3, 60, 687
ApaLI GTGCAC 1 cut(s) 719
ApeKI GCWGC 3 cut(s) 77, 695, 700
ApoI RAATTY 2 cut(s) 503, 842
ArsI GACNNNNNNTTYG 2 cut(s) 935, 967
AspLEI GCGC 1 cut(s) 700
AsuHPI GGTGA 1 cut(s) 17
BaeGI GKGCMC 1 cut(s) 723
Bbv12I GWGCWC 1 cut(s) 723
BbvI GCAGC 3 cut(s) 64, 682, 687
BccI CCATC 2 cut(s) 333, 622
BcgI CGANNNNNNTGC 2 cut(s) 857, 891
BciT130I CCWGG 2 cut(s) 678, 749
BfaI CTAG 2 cut(s) 125, 797
BisI GCNGC 4 cut(s) 78, 393, 696, 701
BlsI GCNGC 4 cut(s) 79, 394, 697, 702
Bme1390I CCNGG 2 cut(s) 678, 749
BmrFI CCNGG 2 cut(s) 678, 749
BmsI GCATC 1 cut(s) 646
BpmI CTGGAG 1 cut(s) 770
BsaJI CCNNGG 2 cut(s) 677, 690
Bsc4I CCNNNNNNNGG 1 cut(s) 559
BseBI CCWGG 2 cut(s) 678, 749
BseDI CCNNGG 2 cut(s) 677, 690
BseGI GGATG 2 cut(s) 589, 637
BseLI CCNNNNNNNGG 1 cut(s) 559
BseMII CTCAG 1 cut(s) 549
BseRI GAGGAG 2 cut(s) 236, 443
BseSI GKGCMC 1 cut(s) 723
BseXI GCAGC 3 cut(s) 64, 682, 687
BsgI GTGCAG 2 cut(s) 762, 851
Bsh1236I CGCG 1 cut(s) 910
BshFI GGCC 3 cut(s) 5, 62, 689
BsiHKAI GWGCWC 1 cut(s) 723
BslFI GGGAC 1 cut(s) 629
BslI CCNNNNNNNGG 1 cut(s) 559
BsmFI GGGAC 1 cut(s) 629
BsmI GAATGC 2 cut(s) 184, 190
BsnI GGCC 3 cut(s) 5, 62, 689
Bsp1286I GDGCHC 1 cut(s) 723
Bsp143I GATC 4 cut(s) 39, 444, 454, 508
BspACI CCGC 4 cut(s) 206, 392, 573, 613
BspANI GGCC 3 cut(s) 5, 62, 689
BspCNI CTCAG 1 cut(s) 548
BspFNI CGCG 1 cut(s) 910
BspPI GGATC 3 cut(s) 47, 452, 462
BssECI CCNNGG 2 cut(s) 677, 690
BssMI GATC 4 cut(s) 39, 444, 454, 508
BssT1I CCWWGG 1 cut(s) 690
Bst2UI CCWGG 2 cut(s) 678, 749
Bst4CI ACNGT 1 cut(s) 528
Bst6I CTCTTC 1 cut(s) 213
BstC8I GCNNGC 2 cut(s) 60, 758
BstDEI CTNAG 2 cut(s) 335, 535
BstEII GGTNACC 1 cut(s) 208
BstF5I GGATG 2 cut(s) 589, 637
BstFNI CGCG 1 cut(s) 910
BstHHI GCGC 1 cut(s) 700
BstKTI GATC 4 cut(s) 42, 447, 457, 511
BstMBI GATC 4 cut(s) 39, 444, 454, 508
BstMWI GCNNNNNNNGC 3 cut(s) 55, 598, 695
BstNI CCWGG 2 cut(s) 678, 749
BstNSI RCATGY 1 cut(s) 760
BstPI GGTNACC 1 cut(s) 208
BstSCI CCNGG 2 cut(s) 676, 747
BstSLI GKGCMC 1 cut(s) 723
BstUI CGCG 1 cut(s) 910
BstV1I GCAGC 3 cut(s) 64, 682, 687
BstX2I RGATCY 2 cut(s) 39, 444
BstYI RGATCY 2 cut(s) 39, 444
BsuRI GGCC 3 cut(s) 5, 62, 689
BtsCI GGATG 2 cut(s) 589, 637
BtsI GCAGTG 1 cut(s) 618
BtsIMutI CAGTG 1 cut(s) 618
Cac8I GCNNGC 2 cut(s) 60, 758
CfoI GCGC 1 cut(s) 700
Csp6I GTAC 1 cut(s) 157
CviAII CATG 5 cut(s) 356, 416, 554, 646, 757
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 2 cut(s) 335, 535
DpnI GATC 4 cut(s) 41, 446, 456, 510
DpnII GATC 4 cut(s) 39, 444, 454, 508
DraI TTTAAA 1 cut(s) 322
EaeI YGGCCR 2 cut(s) 3, 60
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 690
Eco57I CTGAAG 1 cut(s) 587
Eco91I GGTNACC 1 cut(s) 208
EcoO65I GGTNACC 1 cut(s) 208
EcoRII CCWGG 2 cut(s) 676, 747
EcoT14I CCWWGG 1 cut(s) 690
ErhI CCWWGG 1 cut(s) 690
FaeI CATG 5 cut(s) 359, 419, 557, 649, 760
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FaqI GGGAC 1 cut(s) 629
FatI CATG 5 cut(s) 355, 415, 553, 645, 756
FauI CCCGC 1 cut(s) 606
Fnu4HI GCNGC 4 cut(s) 78, 393, 696, 701
FokI GGATG 2 cut(s) 596, 644
Fsp4HI GCNGC 4 cut(s) 78, 393, 696, 701
FspBI CTAG 2 cut(s) 125, 797
GlaI GCGC 1 cut(s) 699
GluI GCNGC 4 cut(s) 78, 393, 696, 701
GsuI CTGGAG 1 cut(s) 770
HaeIII GGCC 3 cut(s) 5, 62, 689
HhaI GCGC 1 cut(s) 700
Hin1II CATG 5 cut(s) 359, 419, 557, 649, 760
Hin6I GCGC 1 cut(s) 698
HinP1I GCGC 1 cut(s) 698
HincII GTYRAC 1 cut(s) 733
HindII GTYRAC 1 cut(s) 733
HinfI GANTC 5 cut(s) 22, 82, 566, 803, 821
HphI GGTGA 1 cut(s) 17
Hpy166II GTNNAC 2 cut(s) 721, 733
Hpy188I TCNGA 5 cut(s) 495, 606, 793, 853, 879
Hpy188III TCNNGA 2 cut(s) 13, 260
Hpy8I GTNNAC 2 cut(s) 721, 733
HpyAV CCTTC 1 cut(s) 858
HpyCH4III ACNGT 1 cut(s) 528
HpyF10VI GCNNNNNNNGC 3 cut(s) 55, 598, 695
HpyF3I CTNAG 2 cut(s) 335, 535
Hsp92II CATG 5 cut(s) 359, 419, 557, 649, 760
HspAI GCGC 1 cut(s) 698
Kzo9I GATC 4 cut(s) 39, 444, 454, 508
LmnI GCTCC 2 cut(s) 223, 430
Lsp1109I GCAGC 3 cut(s) 64, 682, 687
LweI GCATC 1 cut(s) 646
MaeI CTAG 2 cut(s) 125, 797
MaeIII GTNAC 4 cut(s) 208, 269, 911, 982
MalI GATC 4 cut(s) 41, 446, 456, 510
MboI GATC 4 cut(s) 39, 444, 454, 508
MboII GAAGA 3 cut(s) 34, 230, 419
MfeI CAATTG 2 cut(s) 227, 816
MflI RGATCY 2 cut(s) 39, 444
MhlI GDGCHC 1 cut(s) 723
MluCI AATT 5 cut(s) 165, 227, 503, 816, 842
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 8 cut(s) 28, 214, 297, 421, 556, 574, 684, 951
MseI TTAA 3 cut(s) 321, 377, 810
MspA1I CMGCKG 1 cut(s) 58
MspR9I CCNGG 2 cut(s) 678, 749
MunI CAATTG 2 cut(s) 227, 816
Mva1269I GAATGC 2 cut(s) 184, 190
MvaI CCWGG 2 cut(s) 678, 749
MvnI CGCG 1 cut(s) 910
MwoI GCNNNNNNNGC 3 cut(s) 55, 598, 695
NdeII GATC 4 cut(s) 39, 444, 454, 508
NlaIII CATG 5 cut(s) 359, 419, 557, 649, 760
NmuCI GTSAC 1 cut(s) 911
NspI RCATGY 1 cut(s) 760
PaeI GCATGC 1 cut(s) 760
PctI GAATGC 2 cut(s) 184, 190
PfeI GAWTC 4 cut(s) 82, 566, 803, 821
PflMI CCANNNNNTGG 1 cut(s) 559
PkrI GCNGC 4 cut(s) 79, 394, 697, 702
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
Psp6I CCWGG 2 cut(s) 676, 747
PspEI GGTNACC 1 cut(s) 208
PspGI CCWGG 2 cut(s) 676, 747
PsuI RGATCY 2 cut(s) 39, 444
PvuII CAGCTG 1 cut(s) 58
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SaqAI TTAA 3 cut(s) 321, 377, 810
SatI GCNGC 4 cut(s) 78, 393, 696, 701
Sau3AI GATC 4 cut(s) 39, 444, 454, 508
SchI GAGTC 1 cut(s) 16
ScrFI CCNGG 2 cut(s) 678, 749
SduI GDGCHC 1 cut(s) 723
SfaNI GCATC 1 cut(s) 646
SphI GCATGC 1 cut(s) 760
Sse9I AATT 5 cut(s) 165, 227, 503, 816, 842
SsiI CCGC 4 cut(s) 206, 392, 573, 613
SspI AATATT 1 cut(s) 375
SspMI CTAG 2 cut(s) 125, 797
StyD4I CCNGG 2 cut(s) 676, 747
StyI CCWWGG 1 cut(s) 690
TaaI ACNGT 1 cut(s) 528
TaqI TCGA 2 cut(s) 20, 941
TasI AATT 5 cut(s) 165, 227, 503, 816, 842
TauI GCSGC 1 cut(s) 395
TfiI GAWTC 4 cut(s) 82, 566, 803, 821
Tru1I TTAA 3 cut(s) 321, 377, 810
Tru9I TTAA 3 cut(s) 321, 377, 810
TscAI CASTG 1 cut(s) 625
TseFI GTSAC 1 cut(s) 911
TseI GCWGC 3 cut(s) 77, 695, 700
Tsp45I GTSAC 1 cut(s) 911
TspDTI ATGAA 4 cut(s) 261, 269, 372, 984
TspRI CASTG 1 cut(s) 625
Van91I CCANNNNNTGG 1 cut(s) 559
VneI GTGCAC 1 cut(s) 719
XapI RAATTY 2 cut(s) 503, 842
XceI RCATGY 1 cut(s) 760
XspI CTAG 2 cut(s) 125, 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.