Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001330

Physical Location & Seq

Genomic Coordinates Reverse (-)

11627260 .. 11628235

Gene Structure 976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g17731.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTTAAATGTTGAGCTGCTCGTTGGTGCCTGTGTGAGTGGTAGTCTTGGCGGAGAGCCTATTCAGCGCATTCGGGTGTGCCGCGCACCTGTCATCTCCACCGTCGATTTTGACTCGGACTTAACAGAGCCTTTTGACTTTTTCAAAATGGACGGTGGAGATGACGGATCCGCGGCGCACCCGGCTCAAGGCTTGAGCCTGAGCTTGAAACATACCATCCTATCTGCTCCCCTCCCTCAGTTCCAAAAATCCCAAGAGCTTCTGAAGATTTTGAACCGTCGTACTAGTAACATACATGCCCAGCTTCTTTTCGCTGCACCTTTCGTTAGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

11.99

Weight (kDa)

5.51

Isoelectric Point (pI)

51.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11210
fragaria_vesca	FvH4_4g09350 FvH4_6g11460 FvH4_6g11470 FvH4_6g17731 FvH4_7g24410 FvH4_7g24410 FvH4_7g24410
malus_domestica	MD01G1152500.v1.1 MD04G1152200.v1.1 MD04G1152600.v1.1 MD07G1221600.v1.1
prunus_persica	Prupe.2G249500_v2.0.a1 Prupe.2G249500_v2.0.a1 Prupe.6G277200_v2.0.a1 Prupe.6G277200_v2.0.a1
pyrus_communis	pycom01g17020 pycom04g13820 pycom04g13830 pycom07g20000
rosa_chinensis	RchiOBHm_Chr1g0370111 RchiOBHm_Chr3g0463151 RchiOBHm_Chr3g0463161 RchiOBHm_Chr4g0412941
rosa_laevigata	RLG00000024807 RLG00000024809 RLG00000027073
rosa_multiflora	Rmu_sc0008124.1_g000006 Rmu_sc0011509.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286810 Rroxscaffold_6G00416920 Rroxscaffold_6G00416930
rosa_rugosa	Rorug01G0354100 Rorug01G0354200 Rorug03G0061800 Rorug03G0061800 Rorug03G0061800 Rorug03G0061800
rosa_samantha	Rh1AG362700 Rh1BG325900 Rh1CG339200 Rh3AG120000 Rh3AG120100 Rh3BG124400 Rh3BG124500 Rh3CG126400 Rh3CG126500 Rh3DG125400 Rh3DG125500 Rh4AG176700 Rh4CG187700
rosa_wichuraiana	Rw1G031920 Rw3G010150 Rw3G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	26
AccII	CGCG	2 cut(s)	84, 173
AciI	CCGC	4 cut(s)	51, 82, 171, 173
AclWI	GGATC	2 cut(s)	162, 175
AcuI	CTGAAG	1 cut(s)	284
AfaI	GTAC	1 cut(s)	283
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	3 cut(s)	145, 208, 274
AhlI	ACTAGT	1 cut(s)	284
AluBI	AGCT	4 cut(s)	16, 204, 259, 304
AluI	AGCT	4 cut(s)	16, 204, 259, 304
AlwI	GGATC	2 cut(s)	162, 175
ApeKI	GCWGC	2 cut(s)	16, 314
AspLEI	GCGC	3 cut(s)	69, 86, 178
AsuC2I	CCSGG	1 cut(s)	182
BamHI	GGATCC	1 cut(s)	167
BanI	GGYRCC	1 cut(s)	26
BbvI	GCAGC	2 cut(s)	3, 301
BccI	CCATC	1 cut(s)	224
BcnI	CCSGG	1 cut(s)	182
BcuI	ACTAGT	1 cut(s)	284
BfaI	CTAG	1 cut(s)	285
BisI	GCNGC	4 cut(s)	17, 82, 174, 315
BlsI	GCNGC	4 cut(s)	18, 83, 175, 316
Bme1390I	CCNGG	1 cut(s)	182
BmiI	GGNNCC	2 cut(s)	28, 169
BmrFI	CCNGG	1 cut(s)	182
Bpu10I	CCTNAGC	1 cut(s)	200
BpuEI	CTTGAG	2 cut(s)	171, 214
BpuMI	CCSGG	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	1 cut(s)	216
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMII	CTCAG	2 cut(s)	191, 251
BseXI	GCAGC	2 cut(s)	3, 301
BseYI	CCCAGC	1 cut(s)	300
BsgI	GTGCAG	1 cut(s)	300
Bsh1236I	CGCG	2 cut(s)	84, 173
BshNI	GGYRCC	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmI	GAATGC	1 cut(s)	69
Bsp143I	GATC	1 cut(s)	167
BspACI	CCGC	4 cut(s)	51, 82, 171, 173
BspCNI	CTCAG	2 cut(s)	192, 250
BspFNI	CGCG	2 cut(s)	84, 173
BspLI	GGNNCC	2 cut(s)	28, 169
BspPI	GGATC	2 cut(s)	162, 175
BspT107I	GGYRCC	1 cut(s)	26
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	1 cut(s)	167
Bst4CI	ACNGT	3 cut(s)	103, 155, 278
BstDEI	CTNAG	2 cut(s)	200, 237
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	216
BstFNI	CGCG	2 cut(s)	84, 173
BstHHI	GCGC	3 cut(s)	69, 86, 178
BstKTI	GATC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	167
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 182
BstNSI	RCATGY	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	180
BstUI	CGCG	2 cut(s)	84, 173
BstV1I	GCAGC	2 cut(s)	3, 301
BstX2I	RGATCY	1 cut(s)	167
BstYI	RGATCY	1 cut(s)	167
BtgI	CCRYGG	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	216
CfoI	GCGC	3 cut(s)	69, 86, 178
Cfr42I	CCGCGG	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	282
CviAII	CATG	1 cut(s)	296
CviJI	RGCY	9 cut(s)	16, 58, 130, 185, 192, 198, 204, 259, 304
CviKI_1	RGCY	9 cut(s)	16, 58, 130, 185, 192, 198, 204, 259, 304
CviQI	GTAC	1 cut(s)	282
DdeI	CTNAG	2 cut(s)	200, 237
DpnI	GATC	1 cut(s)	169
DpnII	GATC	1 cut(s)	167
EciI	GGCGGA	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	284
FaeI	CATG	1 cut(s)	299
FaiI	YATR	3 cut(s)	213, 293, 297
FatI	CATG	1 cut(s)	295
Fnu4HI	GCNGC	4 cut(s)	17, 82, 174, 315
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	4 cut(s)	17, 82, 174, 315
FspBI	CTAG	1 cut(s)	285
GlaI	GCGC	3 cut(s)	68, 85, 177
GluI	GCNGC	4 cut(s)	17, 82, 174, 315
GsaI	CCCAGC	1 cut(s)	304
HapII	CCGG	1 cut(s)	182
HhaI	GCGC	3 cut(s)	69, 86, 178
Hin1II	CATG	1 cut(s)	299
Hin6I	GCGC	3 cut(s)	67, 84, 176
HinP1I	GCGC	3 cut(s)	67, 84, 176
HinfI	GANTC	1 cut(s)	113
HpaII	CCGG	1 cut(s)	182
Hpy188I	TCNGA	2 cut(s)	118, 264
Hpy99I	CGWCG	2 cut(s)	107, 282
HpyCH4III	ACNGT	3 cut(s)	103, 155, 278
HpyCH4V	TGCA	1 cut(s)	317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 182
HpyF3I	CTNAG	2 cut(s)	200, 237
Hsp92II	CATG	1 cut(s)	299
HspAI	GCGC	3 cut(s)	67, 84, 176
KspI	CCGCGG	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	167
LmnI	GCTCC	1 cut(s)	232
LpnPI	CCDG	5 cut(s)	43, 102, 195, 212, 314
Lsp1109I	GCAGC	2 cut(s)	3, 301
MaeI	CTAG	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	1 cut(s)	169
MboI	GATC	1 cut(s)	167
MboII	GAAGA	1 cut(s)	277
MflI	RGATCY	1 cut(s)	167
MlyI	GAGTC	1 cut(s)	107
MnlI	CCTC	2 cut(s)	242, 246
MseI	TTAA	2 cut(s)	5, 122
MslI	CAYNNNNRTG	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	182
Mva1269I	GAATGC	1 cut(s)	69
MvnI	CGCG	2 cut(s)	84, 173
MwoI	GCNNNNNNNGC	2 cut(s)	64, 182
NciI	CCSGG	1 cut(s)	182
NdeII	GATC	1 cut(s)	167
NlaIII	CATG	1 cut(s)	299
NlaIV	GGNNCC	2 cut(s)	28, 169
NspI	RCATGY	1 cut(s)	299
PctI	GAATGC	1 cut(s)	69
PkrI	GCNGC	4 cut(s)	18, 83, 175, 316
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
PspFI	CCCAGC	1 cut(s)	300
PspN4I	GGNNCC	2 cut(s)	28, 169
PsuI	RGATCY	1 cut(s)	167
RsaI	GTAC	1 cut(s)	283
RsaNI	GTAC	1 cut(s)	282
RseI	CAYNNNNRTG	1 cut(s)	74
SacII	CCGCGG	1 cut(s)	174
SaqAI	TTAA	2 cut(s)	5, 122
SatI	GCNGC	4 cut(s)	17, 82, 174, 315
Sau3AI	GATC	1 cut(s)	167
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	1 cut(s)	182
SetI	ASST	6 cut(s)	18, 91, 206, 261, 306, 322
Sfr303I	CCGCGG	1 cut(s)	174
SgrBI	CCGCGG	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	74
SmlI	CTYRAG	2 cut(s)	186, 193
SmoI	CTYRAG	2 cut(s)	186, 193
SpeI	ACTAGT	1 cut(s)	284
SsiI	CCGC	4 cut(s)	51, 82, 171, 173
SspMI	CTAG	1 cut(s)	285
StyD4I	CCNGG	1 cut(s)	180
TaaI	ACNGT	3 cut(s)	103, 155, 278
TaqI	TCGA	1 cut(s)	105
TauI	GCSGC	2 cut(s)	84, 176
Tru1I	TTAA	2 cut(s)	5, 122
Tru9I	TTAA	2 cut(s)	5, 122
TseI	GCWGC	2 cut(s)	16, 314
TspGWI	ACGGA	1 cut(s)	180
XceI	RCATGY	1 cut(s)	299
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.