AT3G11330

Plant intracellular ras-group-related LRR protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
3551759 .. 3554843
3085 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G11330.1

Sequence Viewer

Length: 1500 bp
ATGGCGGCAGAACCTAACCCTAAGAATTTCCCTGTCCTCTCTTATGTCTTGGCTCGTCTCCCTTCTTTCACCGCCAAATCCCCTTCCTCCTCCGTTCCTCCCTTCGACATCGAACAACCACCACCATCATCATCATCATCATCGATTGAGATCGTCACTCAGATGCCTCACTTAACACAACCAGATGTTCTCGCTTCAATGACAAGTGCGATCTCTGACGTCGCCGAGACTCGATCTATCCTTCGAACCCTAGGACCTAGACCAGATCACGAATCAGTCGATAAGGCTCGTGCTAAACTCTCGGAAATCGAATCGTTCTTATCTGAATCGTTCGAGGATATCGCGTTAACCGATGCGGCGGCGAAAGATGAGAAGAGGAGACAAGAGATGGATCAGGAGAAGACTTGGTGTGAGTCGATTTTGAAGCTTGATGAGGTTCATGCTTCGTATGAGAAGCTTTTGAAAGAAGCAGAGGAGAGGCTTGTTAGGATTTATGAATCTGCTGAGAAGAATGCGGCGGAGGATGAGGAGAATGTTGCGGCTGTGGAGGTTAATGAGGAGGTTGTTGGGATATTGCAGCATGCTTCTGCTAATCCGGTGGATCGTGTTGATTTGTCTGGGAGGAAACTGAGGTTGCTACCTGAAGCTTTTGGGAGGATTCAAGGGTTGCTTGTTCTTAATCTCTCCAACAATAAGCTTGAGTCGATTCCTGATTCAATTGCTGGATTGCATAGTCTTGTTGAACTGGATGTCTCCACGAATTCTCTGGAGACATTACCTGATTCCATCGGTTTACTGTCCAAACTAAAAATCCTGAATGTTTCGACTAACAAGCTCACATCCTTGCCTGACTCCATCTGCCGCTGTGGGTCGTTGGTTATCTTGGACGTGAGCTTCAACCGTCTCACCTACTTACCGACCAACATCGGTCCTGAGCTAGTGAATCTAGAAAAGCTCCTGGTTCAGTATAACAAGATCCGATCCTTCCCGACCAGTATAGGCGAAATGAGATCCCTAAAACACCTCGACGCCCACTTCAACGAACTTAACGGCCTTCCTGATTCTTTCGTGTTGCTCACAAATCTCGAGTACTTAAACCTAAGCAGCAACTTCAGTGATCTCAAGGATCTCCCATTCTCATTCGGCGAACTCATAAGCCTCCAAGAACTCGACTTGAGTAACAACCAAATCCATGCCCTCCCTGACACTTTTGGCACACTTGATAGCCTGACCAAACTGAATGTGGATCAGAACCCGCTCGTCGTCCCACCCGAGGAAGTGGTGAAGGAAGGTGTTGAAGCTGTGAAGACGTACATGGGTCAGAGAAGGATCAGTATGTTGGAAGAAGAAGAGAAGAAGAAAATGGAGGAAGAGATGGAGCAGGCAAACGCCGGGTGGCTCACACGAACCACATCGAAGCTGAAAACATATGTCGCAGATGTTTCAGAGTATCTCGGATCAAATTCTCCTCGAGACCCTTACCTTGAACGACAGCTATGA

Protein Analysis

499

Amino Acids

55.5

Weight (kDa)

4.76

Isoelectric Point (pI)

48.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 211 - 256 4.7e-09 Leucine rich repeat
LRR_8 PF13855 245 - 302 3.5e-08 Leucine rich repeat
LRR_8 PF13855 315 - 370 1.9e-07 Leucine rich repeat
LRR_14 PF23598 359 - 418 1.7e-07 Leucine-rich repeat region
LRR_8 PF13855 380 - 420 1.3e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 222
AccBSI CCGCTC 1 cut(s) 1258
AccII CGCG 1 cut(s) 344
AciI CCGC 9 cut(s) 5, 72, 356, 359, 515, 518, 539, 862, 1256
AclWI GGATC 9 cut(s) 399, 609, 970, 975, 1005, 1134, 1254, 1337, 1465
AcsI RAATTY 3 cut(s) 25, 760, 1462
AcuI CTGAAG 2 cut(s) 663, 1096
AcyI GRCGYC 2 cut(s) 219, 1029
AfaI GTAC 2 cut(s) 1091, 1313
AfiI CCNNNNNNNGG 1 cut(s) 1273
AjiI CACGTC 1 cut(s) 889
AjnI CCWGG 1 cut(s) 957
Alw26I GTCTC 7 cut(s) 62, 221, 373, 757, 764, 908, 1467
AlwI GGATC 9 cut(s) 399, 609, 970, 975, 1005, 1134, 1254, 1337, 1465
Ama87I CYCGRG 3 cut(s) 1085, 1271, 1470
AoxI GGCC 1 cut(s) 1051
ApeKI GCWGC 2 cut(s) 577, 1104
ApoI RAATTY 3 cut(s) 25, 760, 1462
AspA2I CCTAGG 1 cut(s) 250
AspS9I GGNCC 2 cut(s) 254, 929
AsuC2I CCSGG 1 cut(s) 1393
AsuHPI GGTGA 3 cut(s) 61, 898, 1294
AsuII TTCGAA 1 cut(s) 244
AvaI CYCGRG 3 cut(s) 1085, 1271, 1470
AvaII GGWCC 2 cut(s) 254, 929
AvrII CCTAGG 1 cut(s) 250
BauI CACGAG 1 cut(s) 288
BbsI GAAGAC 2 cut(s) 407, 1313
BbvI GCAGC 2 cut(s) 589, 1116
BccI CCATC 5 cut(s) 133, 382, 794, 863, 1369
BceAI ACGGC 1 cut(s) 1066
BciT130I CCWGG 1 cut(s) 959
BcnI CCSGG 1 cut(s) 1393
BcoDI GTCTC 7 cut(s) 62, 221, 373, 757, 764, 908, 1467
BfaI CTAG 4 cut(s) 251, 258, 938, 947
BisI GCNGC 8 cut(s) 6, 357, 360, 516, 540, 578, 862, 1105
BlnI CCTAGG 1 cut(s) 250
BlsI GCNGC 8 cut(s) 7, 358, 361, 517, 541, 579, 863, 1106
BmcAI AGTACT 1 cut(s) 1091
Bme1390I CCNGG 2 cut(s) 959, 1393
Bme18I GGWCC 2 cut(s) 254, 929
BmeT110I CYCGRG 3 cut(s) 1085, 1271, 1470
BmgBI CACGTC 1 cut(s) 889
BmgT120I GGNCC 2 cut(s) 254, 929
BmrFI CCNGG 2 cut(s) 959, 1393
BmsI GCATC 2 cut(s) 153, 343
BpiI GAAGAC 2 cut(s) 407, 1313
BpmI CTGGAG 1 cut(s) 788
Bpu10I CCTNAGC 2 cut(s) 933, 1100
Bpu14I TTCGAA 1 cut(s) 244
BpuEI CTTGAG 3 cut(s) 719, 1106, 1195
BpuMI CCSGG 1 cut(s) 1393
Bsa29I ATCGAT 1 cut(s) 143
BsaBI GATNNNNATC 1 cut(s) 149
BsaHI GRCGYC 2 cut(s) 219, 1029
BsaI GGTCTC 1 cut(s) 1467
BsaJI CCNNGG 2 cut(s) 250, 1272
BsaWI WCCGGW 1 cut(s) 595
Bsc4I CCNNNNNNNGG 1 cut(s) 1273
Bse1I ACTGG 2 cut(s) 750, 993
Bse8I GATNNNNATC 1 cut(s) 149
BseBI CCWGG 1 cut(s) 959
BseCI ATCGAT 1 cut(s) 143
BseDI CCNNGG 2 cut(s) 250, 1272
BseGI GGATG 3 cut(s) 529, 754, 839
BseJI GATNNNNATC 1 cut(s) 149
BseLI CCNNNNNNNGG 1 cut(s) 1273
BseMII CTCAG 4 cut(s) 173, 495, 620, 924
BseNI ACTGG 2 cut(s) 750, 993
BseRI GAGGAG 6 cut(s) 79, 391, 488, 542, 572, 1458
BseXI GCAGC 2 cut(s) 589, 1116
Bsh1236I CGCG 1 cut(s) 344
BshFI GGCC 1 cut(s) 1053
BshVI ATCGAT 1 cut(s) 143
BsiHKCI CYCGRG 3 cut(s) 1085, 1271, 1470
BsiSI CCGG 2 cut(s) 596, 1392
BslFI GGGAC 1 cut(s) 1250
BslI CCNNNNNNNGG 1 cut(s) 1273
BsmAI GTCTC 7 cut(s) 62, 221, 373, 757, 764, 908, 1467
BsmBI CGTCTC 2 cut(s) 62, 908
BsmFI GGGAC 1 cut(s) 1250
BsmI GAATGC 1 cut(s) 517
BsnI GGCC 1 cut(s) 1053
Bso31I GGTCTC 1 cut(s) 1467
BsoBI CYCGRG 3 cut(s) 1085, 1271, 1470
Bsp119I TTCGAA 1 cut(s) 244
BspACI CCGC 9 cut(s) 5, 72, 356, 359, 515, 518, 539, 862, 1256
BspANI GGCC 1 cut(s) 1053
BspCNI CTCAG 4 cut(s) 172, 496, 621, 925
BspDI ATCGAT 1 cut(s) 143
BspFNI CGCG 1 cut(s) 344
BspPI GGATC 9 cut(s) 399, 609, 970, 975, 1005, 1134, 1254, 1337, 1465
BspT104I TTCGAA 1 cut(s) 244
BspTNI GGTCTC 1 cut(s) 1467
BsrBI CCGCTC 1 cut(s) 1258
BsrI ACTGG 2 cut(s) 750, 993
BssECI CCNNGG 2 cut(s) 250, 1272
BssNI GRCGYC 2 cut(s) 219, 1029
BssSI CACGAG 1 cut(s) 288
BssT1I CCWWGG 1 cut(s) 250
Bst2BI CACGAG 1 cut(s) 288
Bst2UI CCWGG 1 cut(s) 959
Bst4CI ACNGT 2 cut(s) 798, 902
Bst6I CTCTTC 3 cut(s) 368, 1344, 1365
BstACI GRCGYC 2 cut(s) 219, 1029
BstBI TTCGAA 1 cut(s) 244
BstC8I GCNNGC 2 cut(s) 582, 1383
BstDEI CTNAG 6 cut(s) 21, 159, 504, 629, 933, 1100
BstF5I GGATG 3 cut(s) 529, 754, 839
BstFNI CGCG 1 cut(s) 344
BstMAI GTCTC 7 cut(s) 62, 221, 373, 757, 764, 908, 1467
BstNI CCWGG 1 cut(s) 959
BstNSI RCATGY 1 cut(s) 584
BstSCI CCNGG 2 cut(s) 957, 1391
BstUI CGCG 1 cut(s) 344
BstV1I GCAGC 2 cut(s) 589, 1116
BstV2I GAAGAC 2 cut(s) 407, 1313
BstX2I RGATCY 3 cut(s) 975, 1010, 1126
BstYI RGATCY 3 cut(s) 975, 1010, 1126
Bsu15I ATCGAT 1 cut(s) 143
BsuRI GGCC 1 cut(s) 1053
BsuTUI ATCGAT 1 cut(s) 143
BtrI CACGTC 1 cut(s) 889
BtsCI GGATG 3 cut(s) 529, 754, 839
BtsIMutI CAGTG 1 cut(s) 1120
Cac8I GCNNGC 2 cut(s) 582, 1383
Cfr13I GGNCC 2 cut(s) 254, 929
ClaI ATCGAT 1 cut(s) 143
CseI GACGC 1 cut(s) 1037
Csp6I GTAC 2 cut(s) 1090, 1312
CviAII CATG 4 cut(s) 440, 581, 1193, 1315
CviQI GTAC 2 cut(s) 1090, 1312
DdeI CTNAG 6 cut(s) 21, 159, 504, 629, 933, 1100
Eam1104I CTCTTC 3 cut(s) 368, 1344, 1365
EarI CTCTTC 3 cut(s) 368, 1344, 1365
EciI GGCGGA 1 cut(s) 533
Eco130I CCWWGG 1 cut(s) 250
Eco31I GGTCTC 1 cut(s) 1467
Eco32I GATATC 1 cut(s) 340
Eco47I GGWCC 2 cut(s) 254, 929
Eco57I CTGAAG 2 cut(s) 663, 1096
Eco88I CYCGRG 3 cut(s) 1085, 1271, 1470
EcoO109I RGGNCCY 1 cut(s) 254
EcoRI GAATTC 1 cut(s) 760
EcoRII CCWGG 1 cut(s) 957
EcoRV GATATC 1 cut(s) 340
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
Esp3I CGTCTC 2 cut(s) 62, 908
FaeI CATG 4 cut(s) 443, 584, 1196, 1318
FalI AAGNNNNNCTT 2 cut(s) 654, 686
FaqI GGGAC 1 cut(s) 1250
FatI CATG 4 cut(s) 439, 580, 1192, 1314
FauI CCCGC 1 cut(s) 1263
FauNDI CATATG 1 cut(s) 1429
Fnu4HI GCNGC 8 cut(s) 6, 357, 360, 516, 540, 578, 862, 1105
FokI GGATG 3 cut(s) 536, 761, 826
Fsp4HI GCNGC 8 cut(s) 6, 357, 360, 516, 540, 578, 862, 1105
FspBI CTAG 4 cut(s) 251, 258, 938, 947
GluI GCNGC 8 cut(s) 6, 357, 360, 516, 540, 578, 862, 1105
GsuI CTGGAG 1 cut(s) 788
HaeIII GGCC 1 cut(s) 1053
HapII CCGG 2 cut(s) 596, 1392
HgaI GACGC 1 cut(s) 1037
Hin1I GRCGYC 2 cut(s) 219, 1029
Hin1II CATG 4 cut(s) 443, 584, 1196, 1318
HincII GTYRAC 1 cut(s) 348
HindII GTYRAC 1 cut(s) 348
HindIII AAGCTT 4 cut(s) 425, 455, 645, 695
HpaI GTTAAC 1 cut(s) 348
HpaII CCGG 2 cut(s) 596, 1392
HphI GGTGA 3 cut(s) 61, 898, 1294
Hpy166II GTNNAC 2 cut(s) 348, 794
Hpy188I TCNGA 9 cut(s) 162, 217, 304, 325, 980, 1251, 1323, 1447, 1457
Hpy8I GTNNAC 2 cut(s) 348, 794
Hpy99I CGWCG 3 cut(s) 224, 1031, 1265
HpyAV CCTTC 9 cut(s) 72, 93, 112, 251, 994, 1064, 1279, 1283, 1320
HpyCH4III ACNGT 2 cut(s) 798, 902
HpyCH4IV ACGT 3 cut(s) 219, 888, 1310
HpyCH4V TGCA 2 cut(s) 577, 730
HpyF3I CTNAG 6 cut(s) 21, 159, 504, 629, 933, 1100
HpySE526I ACGT 3 cut(s) 219, 888, 1310
Hsp92I GRCGYC 2 cut(s) 219, 1029
Hsp92II CATG 4 cut(s) 443, 584, 1196, 1318
KspAI GTTAAC 1 cut(s) 348
LmnI GCTCC 2 cut(s) 960, 1378
Lsp1109I GCAGC 2 cut(s) 589, 1116
LweI GCATC 2 cut(s) 153, 343
MaeI CTAG 4 cut(s) 251, 258, 938, 947
MaeII ACGT 3 cut(s) 219, 888, 1310
MaeIII GTNAC 2 cut(s) 154, 1178
MbiI CCGCTC 1 cut(s) 1258
MfeI CAATTG 1 cut(s) 717
MflI RGATCY 3 cut(s) 975, 1010, 1126
MluCI AATT 4 cut(s) 25, 717, 760, 1462
MlyI GAGTC 4 cut(s) 223, 422, 710, 845
MmeI TCCRAC 2 cut(s) 711, 1320
MseI TTAA 6 cut(s) 173, 347, 552, 678, 1047, 1094
MslI CAYNNNNRTG 1 cut(s) 161
MspA1I CMGCKG 1 cut(s) 864
MspI CCGG 2 cut(s) 596, 1392
MspR9I CCNGG 2 cut(s) 959, 1393
MunI CAATTG 1 cut(s) 717
Mva1269I GAATGC 1 cut(s) 517
MvaI CCWGG 1 cut(s) 959
MvnI CGCG 1 cut(s) 344
NciI CCSGG 1 cut(s) 1393
NdeI CATATG 1 cut(s) 1429
NlaIII CATG 4 cut(s) 443, 584, 1196, 1318
NmeAIII GCCGAG 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 154
NspI RCATGY 1 cut(s) 584
NspV TTCGAA 1 cut(s) 244
PaeI GCATGC 1 cut(s) 584
PaeR7I CTCGAG 2 cut(s) 1085, 1470
PcsI WCGNNNNNNNCGW 3 cut(s) 276, 348, 1269
PctI GAATGC 1 cut(s) 517
PkrI GCNGC 8 cut(s) 7, 358, 361, 517, 541, 579, 863, 1106
PleI GAGTC 4 cut(s) 223, 421, 709, 845
PpsI GAGTC 4 cut(s) 223, 421, 709, 845
PpuMI RGGWCCY 1 cut(s) 254
Psp5II RGGWCCY 1 cut(s) 254
Psp6I CCWGG 1 cut(s) 957
PspGI CCWGG 1 cut(s) 957
PspPI GGNCC 2 cut(s) 254, 929
PspPPI RGGWCCY 1 cut(s) 254
PsuI RGATCY 3 cut(s) 975, 1010, 1126
RsaI GTAC 2 cut(s) 1091, 1313
RsaNI GTAC 2 cut(s) 1090, 1312
RseI CAYNNNNRTG 1 cut(s) 161
SaqAI TTAA 6 cut(s) 173, 347, 552, 678, 1047, 1094
SatI GCNGC 8 cut(s) 6, 357, 360, 516, 540, 578, 862, 1105
Sau96I GGNCC 2 cut(s) 254, 929
ScaI AGTACT 1 cut(s) 1091
SchI GAGTC 4 cut(s) 223, 422, 710, 845
ScrFI CCNGG 2 cut(s) 959, 1393
SfaNI GCATC 2 cut(s) 153, 343
Sfr274I CTCGAG 2 cut(s) 1085, 1470
SfuI TTCGAA 1 cut(s) 244
SinI GGWCC 2 cut(s) 254, 929
SlaI CTCGAG 2 cut(s) 1085, 1470
SmiMI CAYNNNNRTG 1 cut(s) 161
SmlI CTYRAG 5 cut(s) 698, 1085, 1121, 1174, 1470
SmoI CTYRAG 5 cut(s) 698, 1085, 1121, 1174, 1470
SphI GCATGC 1 cut(s) 584
Sse9I AATT 4 cut(s) 25, 717, 760, 1462
SsiI CCGC 9 cut(s) 5, 72, 356, 359, 515, 518, 539, 862, 1256
SspMI CTAG 4 cut(s) 251, 258, 938, 947
StyD4I CCNGG 2 cut(s) 957, 1391
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 2 cut(s) 798, 902
TaiI ACGT 3 cut(s) 222, 891, 1313
TaqII GACCGA 1 cut(s) 917
TasI AATT 4 cut(s) 25, 717, 760, 1462
TatI WGTACW 1 cut(s) 1089
TauI GCSGC 6 cut(s) 8, 359, 362, 518, 542, 864
Tru1I TTAA 6 cut(s) 173, 347, 552, 678, 1047, 1094
Tru9I TTAA 6 cut(s) 173, 347, 552, 678, 1047, 1094
TscAI CASTG 1 cut(s) 1120
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 2 cut(s) 577, 1104
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 2 cut(s) 428, 510
TspGWI ACGGA 1 cut(s) 82
TspRI CASTG 1 cut(s) 1120
VpaK11BI GGWCC 2 cut(s) 254, 929
XapI RAATTY 3 cut(s) 25, 760, 1462
XbaI TCTAGA 1 cut(s) 946
XceI RCATGY 1 cut(s) 584
XcmI CCANNNNNNNNNTGG 2 cut(s) 763, 1240
XhoI CTCGAG 2 cut(s) 1085, 1470
XmaJI CCTAGG 1 cut(s) 250
XspI CTAG 4 cut(s) 251, 258, 938, 947
ZraI GACGTC 1 cut(s) 220
ZrmI AGTACT 1 cut(s) 1091
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.